Wall clock time and date at job start Sat Apr 11 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99821 * 2 1 4 4 H 1.48499 * 109.47307 * 239.99811 * 3 2 1 5 5 H 1.48500 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47225 * 119.99571 * 3 2 1 7 7 C 1.38811 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99724 * 164.29242 * 7 2 1 9 9 N 1.36933 * 120.00333 * 344.29123 * 7 2 1 10 10 C 1.47241 * 121.34671 * 155.43924 * 9 7 2 11 11 C 1.52787 * 107.89738 * 115.68763 * 10 9 7 12 12 C 1.50606 * 110.82401 * 47.41945 * 11 10 9 13 13 C 1.39046 * 117.56690 * 160.45961 * 12 11 10 14 14 C 1.50704 * 119.72206 * 359.43987 * 13 12 11 15 15 N 1.46493 * 109.46925 * 80.06274 * 14 13 12 16 16 C 1.34779 * 120.00123 * 179.97438 * 15 14 13 17 17 O 1.21280 * 119.99508 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00140 * 179.97438 * 16 15 14 19 19 C 1.50704 * 109.46943 * 180.02562 * 18 16 15 20 20 C 1.41376 * 126.79991 * 124.71639 * 19 18 16 21 21 C 1.35460 * 103.98560 * 179.88709 * 20 19 18 22 22 O 1.34046 * 106.44303 * 0.36712 * 21 20 19 23 23 N 1.20928 * 111.56514 * 359.74916 * 22 21 20 24 24 C 1.37906 * 120.57079 * 179.50610 * 13 12 11 25 25 C 1.38266 * 119.82431 * 359.91667 * 24 13 12 26 26 C 1.37960 * 119.72033 * 0.24042 * 25 24 13 27 27 C 1.37607 * 122.91610 * 340.23573 * 12 11 10 28 28 C 1.46683 * 121.34734 * 335.45993 * 9 7 2 29 29 H 0.97003 * 120.00315 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.77677 * 356.08350 * 10 9 7 31 31 H 1.08996 * 109.81523 * 235.30889 * 10 9 7 32 32 H 1.08994 * 109.20080 * 167.75313 * 11 10 9 33 33 H 1.09001 * 109.19996 * 287.09210 * 11 10 9 34 34 H 1.08994 * 109.46574 * 200.06264 * 14 13 12 35 35 H 1.08996 * 109.47058 * 320.06114 * 14 13 12 36 36 H 0.97005 * 120.00185 * 0.02562 * 15 14 13 37 37 H 1.08997 * 109.47773 * 300.00311 * 18 16 15 38 38 H 1.09003 * 109.46944 * 60.00743 * 18 16 15 39 39 H 1.07999 * 128.01086 * 0.02562 * 20 19 18 40 40 H 1.07988 * 126.77967 * 180.09498 * 21 20 19 41 41 H 1.07996 * 120.08626 * 179.97438 * 24 13 12 42 42 H 1.08004 * 120.14253 * 180.25641 * 25 24 13 43 43 H 1.07998 * 119.74898 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.44080 * 344.36911 * 28 9 7 45 45 H 1.08996 * 109.43976 * 104.25640 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0600 -1.2197 -0.2527 9 7 1.3639 -2.3658 0.3221 10 6 1.8518 -3.6702 -0.1557 11 6 2.2742 -4.4888 1.0633 12 6 1.2163 -4.4393 2.1341 13 6 1.2386 -5.4324 3.1070 14 6 2.2909 -6.5098 3.0511 15 7 3.5476 -5.9937 3.5991 16 6 4.6361 -6.7868 3.6514 17 8 4.5752 -7.9276 3.2442 18 6 5.9291 -6.2557 4.2146 19 6 6.9814 -7.3331 4.1588 20 6 8.2511 -7.2456 3.5432 21 6 8.8092 -8.4588 3.7702 22 8 7.9043 -9.1702 4.4572 23 7 6.8990 -8.5304 4.6629 24 6 0.3052 -5.4409 4.1222 25 6 -0.6612 -4.4535 4.1761 26 6 -0.6875 -3.4688 3.2101 27 6 0.2492 -3.4618 2.1852 28 6 0.1573 -2.3631 1.1562 29 1 -0.4851 0.8400 -0.0004 30 1 2.7064 -3.5248 -0.8164 31 1 1.0563 -4.1889 -0.6906 32 1 2.4317 -5.5245 0.7625 33 1 3.2055 -4.0854 1.4608 34 1 1.9638 -7.3679 3.6380 35 1 2.4440 -6.8147 2.0159 36 1 3.5962 -5.0813 3.9251 37 1 6.2563 -5.3979 3.6271 38 1 5.7761 -5.9501 5.2497 39 1 8.6782 -6.4053 3.0162 40 1 9.7879 -8.7894 3.4556 41 1 0.3295 -6.2162 4.8736 42 1 -1.3921 -4.4528 4.9712 43 1 -1.4424 -2.6976 3.2515 44 1 0.0667 -1.4008 1.6601 45 1 -0.7183 -2.5268 0.5280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754975064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:28 Heat of formation + Delta-G solvation = 73.955064 kcal Electronic energy + Delta-G solvation = -28873.112431 eV Core-core repulsion = 24859.407018 eV Total energy + Delta-G solvation = -4013.705412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.09998 -40.08589 -39.21017 -36.04657 -35.13159 -34.65401 -32.79428 -31.99316 -31.75415 -30.17287 -29.82322 -28.64024 -25.75436 -25.58296 -23.33643 -23.19757 -22.17847 -22.02269 -20.55749 -20.28043 -19.04138 -18.00134 -17.84392 -17.02020 -16.82257 -16.20631 -15.77552 -15.68364 -15.09130 -14.90552 -14.72629 -14.33417 -13.85762 -13.67984 -13.62676 -13.27318 -13.20821 -13.03331 -12.80904 -12.58740 -12.52983 -12.19412 -11.98249 -11.56339 -11.44658 -11.28986 -10.97879 -10.90185 -10.75424 -10.43277 -10.42850 -10.19119 -9.97065 -9.91884 -9.80033 -9.77015 -9.06738 -8.72621 -8.29970 -7.91881 -6.83235 -5.88358 -3.28199 1.35043 1.57163 1.84333 2.01684 2.56968 3.07542 3.25332 3.33033 3.39182 3.39641 3.88445 4.16660 4.34414 4.41600 4.70797 4.86517 4.92998 4.98736 5.04495 5.12452 5.23225 5.25801 5.28351 5.38436 5.46976 5.49695 5.51544 5.71399 5.78471 5.80810 5.95996 6.07473 6.10644 6.18813 6.35590 6.44926 6.51687 6.61904 6.79714 6.82157 6.91661 7.07265 7.17170 7.41233 7.44196 7.57065 7.70000 8.12473 8.15159 8.29783 9.10518 9.72907 10.31133 11.22123 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.002768 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.059003 B =10113.620488 C =11763.425747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.001 3.999 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.593 5.593 10 C 0.141 3.859 11 C -0.099 4.099 12 C -0.046 4.046 13 C -0.125 4.125 14 C 0.167 3.833 15 N -0.720 5.720 16 C 0.514 3.486 17 O -0.531 6.531 18 C -0.064 4.064 19 C 0.025 3.975 20 C -0.228 4.228 21 C -0.065 4.065 22 O 0.103 5.897 23 N -0.338 5.338 24 C -0.118 4.118 25 C -0.132 4.132 26 C -0.113 4.113 27 C -0.077 4.077 28 C 0.205 3.795 29 H 0.256 0.744 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.404 0.596 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.172 0.828 40 H 0.216 0.784 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.174 -12.051 9.635 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.315 5.315 10 C 0.015 3.985 11 C -0.137 4.137 12 C -0.047 4.047 13 C -0.125 4.125 14 C 0.045 3.955 15 N -0.372 5.372 16 C 0.299 3.701 17 O -0.407 6.407 18 C -0.105 4.105 19 C -0.135 4.135 20 C -0.249 4.249 21 C -0.147 4.147 22 O 0.033 5.967 23 N -0.039 5.039 24 C -0.136 4.136 25 C -0.150 4.150 26 C -0.132 4.132 27 C -0.079 4.079 28 C 0.079 3.921 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.238 0.762 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.190 0.810 40 H 0.232 0.768 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.115 0.885 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.064 -13.365 9.984 19.483 hybrid contribution 0.833 2.026 -0.291 2.210 sum 10.897 -11.339 9.693 18.474 Atomic orbital electron populations 1.69989 1.05209 1.25802 1.54285 1.25013 0.95393 0.98382 1.00909 0.86317 0.78856 0.83167 0.78125 1.20848 1.21575 1.21024 1.19124 0.92307 0.84276 1.42200 0.91315 1.43990 1.30144 1.01326 1.56018 1.20912 0.97528 0.87261 0.92817 1.21037 0.96599 0.99815 0.96298 1.19440 0.96391 0.93350 0.95497 1.19814 0.98058 0.97522 0.97129 1.20146 0.81330 0.94371 0.99698 1.46044 1.10462 1.16536 1.64117 1.20267 0.84783 0.85979 0.79063 1.90747 1.84575 1.18166 1.47211 1.20008 0.90101 0.95912 1.04457 1.22875 0.96098 0.93840 1.00652 1.22723 0.95142 1.00431 1.06602 1.25995 0.97808 0.92003 0.98847 1.84876 1.18710 1.38084 1.54995 1.73891 1.04245 1.06082 1.19633 1.20764 0.95910 0.99076 0.97880 1.20942 0.99106 0.95591 0.99337 1.21201 0.98883 0.98557 0.94511 1.21022 0.93091 0.96986 0.96779 1.19772 0.89113 0.94273 0.88903 0.93418 0.92134 0.95570 0.91969 0.91220 0.91265 0.90475 0.76163 0.86352 0.86933 0.81008 0.76796 0.86862 0.86652 0.86238 0.88523 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.39 11.09 55.49 0.62 -24.77 16 2 C 0.00 0.03 4.99 -17.43 -0.09 -0.05 16 3 Si 0.91 20.99 29.58 -169.99 -5.03 15.96 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.59 9.70 -15.06 -0.15 -6.74 16 8 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 9 N -0.59 -14.33 2.97 -173.93 -0.52 -14.85 16 10 C 0.14 2.86 6.51 -3.75 -0.02 2.84 16 11 C -0.10 -1.68 5.24 -28.04 -0.15 -1.83 16 12 C -0.05 -0.80 5.76 -104.60 -0.60 -1.40 16 13 C -0.12 -1.84 5.26 -104.44 -0.55 -2.39 16 14 C 0.17 2.24 5.11 -5.20 -0.03 2.22 16 15 N -0.72 -8.62 5.53 -61.48 -0.34 -8.96 16 16 C 0.51 6.69 7.82 -10.99 -0.09 6.60 16 17 O -0.53 -9.16 15.59 5.56 0.09 -9.07 16 18 C -0.06 -0.61 6.30 -29.03 -0.18 -0.79 16 19 C 0.02 0.28 6.10 -82.10 -0.50 -0.22 16 20 C -0.23 -1.91 11.12 -39.38 -0.44 -2.35 16 21 C -0.07 -0.48 12.30 29.74 0.37 -0.11 16 22 O 0.10 1.14 11.20 17.16 0.19 1.33 16 23 N -0.34 -4.56 11.46 33.42 0.38 -4.18 16 24 C -0.12 -1.63 9.65 -39.69 -0.38 -2.01 16 25 C -0.13 -1.88 10.05 -39.67 -0.40 -2.28 16 26 C -0.11 -1.89 9.62 -39.46 -0.38 -2.27 16 27 C -0.08 -1.49 5.82 -104.57 -0.61 -2.09 16 28 C 0.20 4.75 4.85 -5.04 -0.02 4.72 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 30 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.96 6.26 -51.93 -0.33 0.63 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.93 7.98 -51.93 -0.41 0.51 16 35 H 0.08 1.11 6.32 -51.93 -0.33 0.78 16 36 H 0.40 4.25 8.46 -40.82 -0.35 3.90 16 37 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.22 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.11 1.33 8.02 -52.49 -0.42 0.91 16 42 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.12 1.89 8.05 -52.49 -0.42 1.47 16 44 H 0.10 2.48 6.34 -51.93 -0.33 2.15 16 45 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -33.56 375.45 -9.10 -42.66 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.93 Total: 4.37 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -4.22 Total: -8.16 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.14 Total: -52.76 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.28 Total: -7.74 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.56 -9.10 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754975064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.615 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds