Wall clock time and date at job start Sat Apr 11 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99821 * 2 1 4 4 H 1.48499 * 109.47307 * 239.99811 * 3 2 1 5 5 H 1.48500 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47225 * 119.99571 * 3 2 1 7 7 C 1.38811 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99724 * 164.29242 * 7 2 1 9 9 N 1.36933 * 120.00333 * 344.29123 * 7 2 1 10 10 C 1.47241 * 121.34671 * 155.43924 * 9 7 2 11 11 C 1.52787 * 107.89738 * 115.68763 * 10 9 7 12 12 C 1.50606 * 110.82401 * 47.41945 * 11 10 9 13 13 C 1.39046 * 117.56690 * 160.45961 * 12 11 10 14 14 C 1.50704 * 119.72206 * 359.43987 * 13 12 11 15 15 N 1.46493 * 109.46925 * 80.06274 * 14 13 12 16 16 C 1.34779 * 120.00123 * 179.97438 * 15 14 13 17 17 O 1.21280 * 119.99508 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00140 * 179.97438 * 16 15 14 19 19 C 1.50704 * 109.46943 * 180.02562 * 18 16 15 20 20 C 1.41376 * 126.79991 * 124.71639 * 19 18 16 21 21 C 1.35460 * 103.98560 * 179.88709 * 20 19 18 22 22 O 1.34046 * 106.44303 * 0.36712 * 21 20 19 23 23 N 1.20928 * 111.56514 * 359.74916 * 22 21 20 24 24 C 1.37906 * 120.57079 * 179.50610 * 13 12 11 25 25 C 1.38266 * 119.82431 * 359.91667 * 24 13 12 26 26 C 1.37960 * 119.72033 * 0.24042 * 25 24 13 27 27 C 1.37607 * 122.91610 * 340.23573 * 12 11 10 28 28 C 1.46683 * 121.34734 * 335.45993 * 9 7 2 29 29 H 0.97003 * 120.00315 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.77677 * 356.08350 * 10 9 7 31 31 H 1.08996 * 109.81523 * 235.30889 * 10 9 7 32 32 H 1.08994 * 109.20080 * 167.75313 * 11 10 9 33 33 H 1.09001 * 109.19996 * 287.09210 * 11 10 9 34 34 H 1.08994 * 109.46574 * 200.06264 * 14 13 12 35 35 H 1.08996 * 109.47058 * 320.06114 * 14 13 12 36 36 H 0.97005 * 120.00185 * 0.02562 * 15 14 13 37 37 H 1.08997 * 109.47773 * 300.00311 * 18 16 15 38 38 H 1.09003 * 109.46944 * 60.00743 * 18 16 15 39 39 H 1.07999 * 128.01086 * 0.02562 * 20 19 18 40 40 H 1.07988 * 126.77967 * 180.09498 * 21 20 19 41 41 H 1.07996 * 120.08626 * 179.97438 * 24 13 12 42 42 H 1.08004 * 120.14253 * 180.25641 * 25 24 13 43 43 H 1.07998 * 119.74898 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.44080 * 344.36911 * 28 9 7 45 45 H 1.08996 * 109.43976 * 104.25640 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0600 -1.2197 -0.2527 9 7 1.3639 -2.3658 0.3221 10 6 1.8518 -3.6702 -0.1557 11 6 2.2742 -4.4888 1.0633 12 6 1.2163 -4.4393 2.1341 13 6 1.2386 -5.4324 3.1070 14 6 2.2909 -6.5098 3.0511 15 7 3.5476 -5.9937 3.5991 16 6 4.6361 -6.7868 3.6514 17 8 4.5752 -7.9276 3.2442 18 6 5.9291 -6.2557 4.2146 19 6 6.9814 -7.3331 4.1588 20 6 8.2511 -7.2456 3.5432 21 6 8.8092 -8.4588 3.7702 22 8 7.9043 -9.1702 4.4572 23 7 6.8990 -8.5304 4.6629 24 6 0.3052 -5.4409 4.1222 25 6 -0.6612 -4.4535 4.1761 26 6 -0.6875 -3.4688 3.2101 27 6 0.2492 -3.4618 2.1852 28 6 0.1573 -2.3631 1.1562 29 1 -0.4851 0.8400 -0.0004 30 1 2.7064 -3.5248 -0.8164 31 1 1.0563 -4.1889 -0.6906 32 1 2.4317 -5.5245 0.7625 33 1 3.2055 -4.0854 1.4608 34 1 1.9638 -7.3679 3.6380 35 1 2.4440 -6.8147 2.0159 36 1 3.5962 -5.0813 3.9251 37 1 6.2563 -5.3979 3.6271 38 1 5.7761 -5.9501 5.2497 39 1 8.6782 -6.4053 3.0162 40 1 9.7879 -8.7894 3.4556 41 1 0.3295 -6.2162 4.8736 42 1 -1.3921 -4.4528 4.9712 43 1 -1.4424 -2.6976 3.2515 44 1 0.0667 -1.4008 1.6601 45 1 -0.7183 -2.5268 0.5280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754975064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:27 Heat of formation + Delta-G solvation = 52.856382 kcal Electronic energy + Delta-G solvation = -28874.027338 eV Core-core repulsion = 24859.407018 eV Total energy + Delta-G solvation = -4014.620320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.82864 -41.27224 -40.38913 -37.66752 -36.18856 -35.49510 -34.46538 -33.21337 -32.57432 -31.77730 -30.89637 -29.92244 -27.43178 -26.83698 -24.80580 -24.02631 -23.76328 -22.87384 -21.75740 -21.20220 -20.60208 -18.73464 -18.64328 -18.62327 -17.96645 -17.34554 -16.96706 -16.82566 -16.51548 -16.18856 -15.92366 -15.61856 -15.40548 -14.98338 -14.71780 -14.39489 -14.31199 -14.14927 -14.07725 -13.74640 -13.68793 -13.38464 -13.27020 -13.15031 -12.80971 -12.70525 -12.53357 -12.37207 -12.19680 -12.18612 -11.85099 -11.62619 -11.34324 -11.25340 -10.86879 -10.66523 -10.48344 -10.11077 -9.56165 -9.33159 -8.77930 -7.90351 -5.33236 0.33589 0.55793 0.72607 1.31647 1.47784 1.49850 1.56645 1.60618 2.26367 2.50124 2.56649 2.93424 3.21249 3.26832 3.61245 3.66144 3.70990 3.92464 3.94886 4.01766 4.15255 4.25804 4.33313 4.37677 4.43058 4.48325 4.55323 4.60436 4.68232 4.73762 4.77646 4.82238 4.90792 4.99575 5.12317 5.14095 5.17542 5.21881 5.35220 5.39478 5.44787 5.58967 5.63231 5.69534 5.94472 6.15566 6.31634 6.50741 7.10287 7.20058 7.44957 7.79167 8.34693 9.18450 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.002768 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.059003 B =10113.620488 C =11763.425747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.260 4.260 8 H 0.074 0.926 9 N -0.610 5.610 10 C 0.137 3.863 11 C -0.085 4.085 12 C -0.057 4.057 13 C -0.114 4.114 14 C 0.173 3.827 15 N -0.711 5.711 16 C 0.514 3.486 17 O -0.577 6.577 18 C -0.060 4.060 19 C 0.005 3.995 20 C -0.237 4.237 21 C -0.053 4.053 22 O 0.085 5.915 23 N -0.386 5.386 24 C -0.105 4.105 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.107 4.107 28 C 0.221 3.779 29 H 0.251 0.749 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.413 0.587 37 H 0.148 0.852 38 H 0.133 0.867 39 H 0.200 0.800 40 H 0.261 0.739 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.118 0.882 44 H 0.062 0.938 45 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.259 -12.833 11.244 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.200 1.200 5 H -0.222 1.222 6 H -0.202 1.202 7 C -0.390 4.390 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.011 3.989 11 C -0.123 4.123 12 C -0.057 4.057 13 C -0.115 4.115 14 C 0.050 3.950 15 N -0.363 5.363 16 C 0.301 3.699 17 O -0.457 6.457 18 C -0.100 4.100 19 C -0.154 4.154 20 C -0.259 4.259 21 C -0.134 4.134 22 O 0.018 5.982 23 N -0.090 5.090 24 C -0.124 4.124 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.108 4.108 28 C 0.095 3.905 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.249 0.751 37 H 0.166 0.834 38 H 0.151 0.849 39 H 0.217 0.783 40 H 0.276 0.724 41 H 0.164 0.836 42 H 0.167 0.833 43 H 0.136 0.864 44 H 0.080 0.920 45 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 12.176 -14.157 11.603 21.984 hybrid contribution 0.199 2.174 -0.797 2.324 sum 12.375 -11.984 10.806 20.335 Atomic orbital electron populations 1.70169 1.06667 1.26010 1.55793 1.25795 0.96135 1.01512 1.01288 0.85294 0.77499 0.78969 0.78422 1.20041 1.22199 1.20198 1.19488 0.92721 0.85360 1.41389 0.90841 1.44242 1.30254 1.02159 1.56652 1.21065 0.97257 0.86083 0.94474 1.20859 0.96643 1.00079 0.94737 1.19453 0.96058 0.93770 0.96445 1.19833 0.98523 0.96658 0.96444 1.20017 0.81586 0.93952 0.99466 1.45952 1.09865 1.16880 1.63575 1.20839 0.85734 0.85274 0.78092 1.90730 1.85359 1.20225 1.49359 1.20134 0.87828 0.96140 1.05931 1.23385 0.97585 0.93706 1.00684 1.23140 0.94198 1.01765 1.06751 1.26900 0.98410 0.91344 0.96698 1.84807 1.19025 1.38621 1.55777 1.73883 1.05803 1.07441 1.21894 1.21164 0.94477 0.99085 0.97634 1.21262 0.99482 0.94224 0.98894 1.21286 0.98458 0.99634 0.94739 1.20664 0.95786 0.97085 0.97314 1.19324 0.87693 0.94395 0.89054 0.94030 0.91771 0.96283 0.90034 0.90727 0.90694 0.91410 0.75058 0.83418 0.84897 0.78299 0.72366 0.83633 0.83311 0.86383 0.91952 0.97850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.92 11.09 21.65 0.24 -54.68 16 2 C -0.05 -2.87 4.99 84.86 0.42 -2.45 16 3 Si 0.97 43.83 29.58 68.60 2.03 45.86 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.26 -14.01 9.70 84.03 0.81 -13.19 16 8 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 9 N -0.61 -30.50 2.97 -704.20 -2.09 -32.59 16 10 C 0.14 5.61 6.51 86.17 0.56 6.18 16 11 C -0.08 -2.81 5.24 29.75 0.16 -2.66 16 12 C -0.06 -1.91 5.76 -19.85 -0.11 -2.02 16 13 C -0.11 -3.07 5.26 -19.75 -0.10 -3.18 16 14 C 0.17 4.23 5.11 85.64 0.44 4.67 16 15 N -0.71 -15.26 5.53 -466.81 -2.58 -17.84 16 16 C 0.51 12.42 7.82 87.66 0.69 13.10 16 17 O -0.58 -19.47 15.59 -3.03 -0.05 -19.52 16 18 C -0.06 -1.00 6.30 29.10 0.18 -0.82 16 19 C 0.01 0.11 6.10 43.58 0.27 0.38 16 20 C -0.24 -3.38 11.12 22.40 0.25 -3.13 16 21 C -0.05 -0.65 12.30 67.18 0.83 0.17 16 22 O 0.08 1.81 11.20 71.57 0.80 2.61 16 23 N -0.39 -10.24 11.46 -49.55 -0.57 -10.81 16 24 C -0.11 -2.52 9.65 22.20 0.21 -2.31 16 25 C -0.12 -3.09 10.05 22.21 0.22 -2.87 16 26 C -0.12 -4.05 9.62 22.35 0.22 -3.84 16 27 C -0.11 -4.19 5.82 -19.83 -0.12 -4.30 16 28 C 0.22 10.82 4.85 85.63 0.42 11.24 16 29 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.06 2.52 7.96 -2.39 -0.02 2.50 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 2.39 6.26 -2.39 -0.01 2.38 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.07 1.79 7.98 -2.39 -0.02 1.78 16 35 H 0.07 1.82 6.32 -2.39 -0.02 1.81 16 36 H 0.41 7.47 8.46 -92.70 -0.78 6.69 16 37 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.13 1.63 8.14 -2.39 -0.02 1.62 16 39 H 0.20 1.52 8.06 -2.91 -0.02 1.49 16 40 H 0.26 0.33 8.06 -2.92 -0.02 0.31 16 41 H 0.15 2.65 8.02 -2.91 -0.02 2.63 16 42 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 43 H 0.12 3.83 8.05 -2.91 -0.02 3.80 16 44 H 0.06 3.41 6.34 -2.39 -0.02 3.40 16 45 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 Total: -1.00 -77.47 375.45 3.36 -74.10 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.24 Total: 17.90 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.34 Total: -5.04 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -5.00 Total: -115.93 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.75 Total: -16.91 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -77.47 3.36 -74.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754975064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.961 kcal (2) G-P(sol) polarization free energy of solvation -77.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds