Wall clock time and date at job start Sat Apr 11 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47124 * 2 1 4 4 O 1.45197 * 109.46656 * 239.99874 * 2 1 3 5 5 C 1.34229 * 117.00040 * 90.00307 * 4 2 1 6 6 O 1.20822 * 120.00211 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99848 * 179.97438 * 5 4 2 8 8 N 1.46506 * 109.46975 * 179.97438 * 7 5 4 9 9 C 1.46406 * 119.53562 * 269.97970 * 8 7 5 10 10 C 1.53042 * 109.51603 * 144.16763 * 9 8 7 11 11 C 1.50810 * 109.18556 * 46.69687 * 10 9 8 12 12 O 1.21233 * 120.01796 * 145.79155 * 11 10 9 13 13 N 1.34558 * 119.96559 * 325.76412 * 11 10 9 14 14 C 1.34294 * 119.53454 * 90.00257 * 8 7 5 15 15 O 1.21539 * 119.20686 * 5.38938 * 14 8 7 16 16 C 1.50698 * 109.46906 * 120.00022 * 2 1 3 17 17 O 1.21290 * 119.99884 * 119.99875 * 16 2 1 18 18 N 1.34773 * 120.00381 * 299.99501 * 16 2 1 19 19 C 1.46501 * 119.99616 * 0.02562 * 18 16 2 20 20 C 1.46500 * 120.00458 * 180.02562 * 18 16 2 21 21 C 1.50696 * 109.47082 * 89.99987 * 20 18 16 22 22 H 1.08001 * 120.00237 * 0.02562 * 21 20 18 23 23 C 1.37878 * 120.00072 * 179.97438 * 21 20 18 24 24 N 1.31509 * 119.99803 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99941 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47280 * 60.00270 * 25 23 21 27 27 H 1.48501 * 109.47300 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47429 * 300.00416 * 25 23 21 29 29 H 1.09006 * 109.47462 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47173 * 299.99969 * 1 2 3 31 31 H 1.09004 * 109.47404 * 59.99787 * 1 2 3 32 32 H 1.08994 * 109.47391 * 60.00082 * 7 5 4 33 33 H 1.08997 * 109.47800 * 299.99845 * 7 5 4 34 34 H 1.09003 * 109.46185 * 264.17952 * 9 8 7 35 35 H 1.08999 * 109.46539 * 24.15432 * 9 8 7 36 36 H 1.09000 * 109.51849 * 166.60819 * 10 9 8 37 37 H 1.08999 * 109.51958 * 286.78261 * 10 9 8 38 38 H 0.97000 * 119.50737 * 184.43510 * 13 11 10 39 39 H 1.08996 * 109.47541 * 89.99737 * 19 18 16 40 40 H 1.08997 * 109.47140 * 209.99826 * 19 18 16 41 41 H 1.09000 * 109.47413 * 329.99562 * 19 18 16 42 42 H 1.08998 * 109.46914 * 210.00359 * 20 18 16 43 43 H 1.08998 * 109.46957 * 330.00064 * 20 18 16 44 44 H 0.97000 * 119.99759 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 -1.1855 5 6 2.2170 0.0639 -2.2811 6 8 1.9973 1.2516 -2.2507 7 6 2.7191 -0.5772 -3.5491 8 7 2.8569 0.4436 -4.5910 9 6 1.7241 0.7329 -5.4722 10 6 1.6971 2.2285 -5.7958 11 6 3.0850 2.6782 -6.1776 12 8 3.2337 3.5429 -7.0142 13 7 4.1582 2.1196 -5.5887 14 6 4.0207 1.1003 -4.7245 15 8 4.9709 0.7677 -4.0436 16 6 2.0323 -0.7104 1.2305 17 8 2.7295 -1.6966 1.1192 18 7 1.7068 -0.2500 2.4546 19 6 0.8642 0.9409 2.5890 20 6 2.1955 -0.9402 3.6508 21 6 3.5229 -0.3563 4.0606 22 1 3.9587 0.4488 3.4876 23 6 4.1805 -0.8491 5.1677 24 7 3.6497 -1.8291 5.8657 25 14 5.8256 -0.1247 5.6761 26 1 5.6598 1.3211 5.9715 27 1 6.3211 -0.8244 6.8886 28 1 6.8040 -0.2952 4.5721 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.0102 -1.3373 -3.8773 33 1 3.6882 -1.0402 -3.3633 34 1 1.8277 0.1634 -6.3958 35 1 0.7959 0.4521 -4.9747 36 1 1.0144 2.4092 -6.6261 37 1 1.3620 2.7846 -4.9202 38 1 5.0444 2.4580 -5.7912 39 1 -0.1837 0.6428 2.6225 40 1 1.1219 1.4665 3.5084 41 1 1.0273 1.5997 1.7360 42 1 1.4776 -0.8150 4.4613 43 1 2.3169 -2.0015 3.4337 44 1 4.1125 -2.1761 6.6443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771603387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:33 Heat of formation + Delta-G solvation = -188.776254 kcal Electronic energy + Delta-G solvation = -30241.365887 eV Core-core repulsion = 25773.125576 eV Total energy + Delta-G solvation = -4468.240311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.85600 -41.84591 -40.60033 -40.02896 -37.91152 -37.17595 -36.72782 -35.83414 -34.93991 -33.17089 -32.49412 -29.70644 -29.14757 -27.72181 -26.06484 -25.96221 -24.75751 -23.97244 -22.25448 -20.49962 -20.12497 -19.49869 -19.31051 -18.73726 -18.66222 -18.11360 -17.81050 -17.39755 -17.24868 -16.92479 -16.48155 -16.34142 -15.87513 -15.74217 -15.69951 -15.31985 -14.89294 -14.70298 -14.37778 -14.25667 -14.10987 -13.81302 -13.62859 -13.53433 -13.34850 -13.15145 -12.95732 -12.81271 -12.64041 -12.61180 -12.41558 -12.21093 -11.96803 -11.91842 -11.82074 -11.74242 -11.45041 -11.41752 -10.66582 -10.63146 -10.18133 -9.52537 -8.25685 -6.40037 0.53717 0.94749 1.06144 1.34565 1.38794 1.45111 1.48268 1.62352 1.89669 2.12619 2.33454 2.46234 3.04296 3.33789 3.39723 3.49832 3.60985 3.80286 3.86118 3.93379 4.10956 4.30919 4.36889 4.39469 4.52358 4.56675 4.66965 4.68474 4.82443 4.87681 4.90286 4.94685 4.99405 5.13252 5.18745 5.31242 5.35883 5.49571 5.76803 6.01947 6.17918 6.37034 6.50189 6.63205 6.68770 6.93606 7.19890 7.34775 8.81297 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.002493 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.028114 B =11230.256425 C =12041.907989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 H 0.107 0.893 4 O -0.340 6.340 5 C 0.442 3.558 6 O -0.523 6.523 7 C 0.141 3.859 8 N -0.597 5.597 9 C 0.105 3.895 10 C -0.152 4.152 11 C 0.526 3.474 12 O -0.537 6.537 13 N -0.673 5.673 14 C 0.712 3.288 15 O -0.595 6.595 16 C 0.497 3.503 17 O -0.579 6.579 18 N -0.600 5.600 19 C 0.068 3.932 20 C 0.261 3.739 21 C -0.549 4.549 22 H 0.049 0.951 23 C 0.012 3.988 24 N -0.924 5.924 25 Si 0.963 3.037 26 H -0.261 1.261 27 H -0.275 1.275 28 H -0.282 1.282 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.187 0.813 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.134 0.866 36 H 0.157 0.843 37 H 0.118 0.882 38 H 0.426 0.574 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.035 0.965 43 H 0.002 0.998 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.752 6.496 -25.327 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.023 3.977 3 H 0.125 0.875 4 O -0.255 6.255 5 C 0.284 3.716 6 O -0.412 6.412 7 C 0.016 3.984 8 N -0.333 5.333 9 C -0.015 4.015 10 C -0.192 4.192 11 C 0.316 3.684 12 O -0.412 6.412 13 N -0.340 5.340 14 C 0.414 3.586 15 O -0.472 6.472 16 C 0.284 3.716 17 O -0.459 6.459 18 N -0.333 5.333 19 C -0.073 4.073 20 C 0.140 3.860 21 C -0.587 4.587 22 H 0.067 0.933 23 C -0.188 4.188 24 N -0.563 5.563 25 Si 0.788 3.212 26 H -0.185 1.185 27 H -0.200 1.200 28 H -0.207 1.207 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.204 0.796 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.175 0.825 37 H 0.136 0.864 38 H 0.267 0.733 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.053 0.947 43 H 0.020 0.980 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.104 6.454 -25.214 28.703 hybrid contribution 1.808 0.570 0.875 2.087 sum -10.296 7.024 -24.339 27.344 Atomic orbital electron populations 1.22392 0.88613 1.04762 1.06258 1.22484 0.98145 0.96234 0.80847 0.87504 1.86605 1.76868 1.42196 1.19840 1.25112 0.73761 0.86334 0.86394 1.90625 1.48863 1.17147 1.84524 1.21186 1.07093 0.89533 0.80592 1.46862 1.12198 1.39872 1.34390 1.22155 0.89620 0.94270 0.95489 1.22376 0.91582 0.97905 1.07304 1.21712 0.88367 0.79895 0.78404 1.90789 1.87358 1.31429 1.31621 1.44285 1.13276 1.32880 1.43592 1.15793 0.83906 0.79448 0.79477 1.91039 1.40072 1.68670 1.47442 1.20764 0.80664 0.84909 0.85301 1.90673 1.39514 1.28837 1.86902 1.48049 1.50155 1.29573 1.05491 1.22236 0.94831 0.86278 1.03961 1.18828 0.93806 0.91825 0.81552 1.21662 1.06183 1.19303 1.11590 0.93273 1.25788 1.01582 0.95222 0.96176 1.70018 1.40623 1.26922 1.18766 0.85535 0.79008 0.79167 0.77517 1.18503 1.19964 1.20731 0.90954 0.87454 0.88761 0.79589 0.85658 0.86815 0.84830 0.82499 0.86396 0.73280 0.89308 0.90940 0.89474 0.94748 0.97991 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.18 71.98 0.66 -2.61 16 2 C 0.08 2.46 2.18 29.85 0.07 2.52 16 3 H 0.11 3.18 6.42 -2.39 -0.02 3.17 16 4 O -0.34 -10.03 9.41 -45.05 -0.42 -10.46 16 5 C 0.44 10.26 8.00 71.24 0.57 10.83 16 6 O -0.52 -13.68 15.65 21.98 0.34 -13.34 16 7 C 0.14 2.00 5.95 85.63 0.51 2.51 16 8 N -0.60 -7.95 2.28 -845.60 -1.93 -9.88 16 9 C 0.10 0.36 6.58 86.41 0.57 0.93 16 10 C -0.15 -0.94 6.28 29.90 0.19 -0.75 16 11 C 0.53 7.98 7.76 87.73 0.68 8.66 16 12 O -0.54 -11.77 17.93 -2.89 -0.05 -11.82 16 13 N -0.67 -11.64 5.18 -441.65 -2.29 -13.93 16 14 C 0.71 14.82 8.22 179.34 1.47 16.29 16 15 O -0.60 -18.06 16.57 -3.84 -0.06 -18.13 16 16 C 0.50 21.18 7.15 87.66 0.63 21.81 16 17 O -0.58 -31.12 16.08 15.74 0.25 -30.87 16 18 N -0.60 -25.19 2.86 -851.15 -2.43 -27.62 16 19 C 0.07 1.93 8.80 127.77 1.12 3.06 16 20 C 0.26 13.95 5.16 85.63 0.44 14.39 16 21 C -0.55 -31.95 9.39 25.60 0.24 -31.71 16 22 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 23 C 0.01 0.69 5.46 84.66 0.46 1.15 16 24 N -0.92 -55.68 13.29 21.45 0.28 -55.39 16 25 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 26 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 29 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.11 1.82 4.53 -2.38 -0.01 1.81 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.19 0.62 8.06 -2.39 -0.02 0.60 16 33 H 0.13 2.26 7.28 -2.39 -0.02 2.24 16 34 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.13 -0.21 8.01 -2.39 -0.02 -0.23 16 36 H 0.16 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.12 0.88 8.14 -2.39 -0.02 0.87 16 38 H 0.43 7.09 8.86 -92.71 -0.82 6.27 16 39 H 0.09 1.88 6.95 -2.39 -0.02 1.86 16 40 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 41 H 0.09 1.96 6.01 -2.39 -0.01 1.95 16 42 H 0.03 1.82 8.07 -2.39 -0.02 1.80 16 43 H 0.00 0.12 7.42 -2.39 -0.02 0.10 16 44 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -93.17 376.73 3.57 -89.60 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.24 Total: 7.18 kcal Atomic # 6 Polarization: 39.47 SS G_CDS: 7.61 Total: 47.08 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -6.36 Total: -106.82 kcal Atomic # 8 Polarization: -84.67 SS G_CDS: 0.06 Total: -84.61 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -93.17 3.57 -89.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771603387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.181 kcal (2) G-P(sol) polarization free energy of solvation -93.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds