Wall clock time and date at job start Sat Apr 11 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00130 * 2 1 4 4 H 1.48493 * 109.47393 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47198 * 120.00139 * 3 2 1 6 6 H 1.48507 * 109.47275 * 239.99994 * 3 2 1 7 7 C 1.40054 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99966 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99975 * 354.97653 * 9 7 2 11 11 N 1.34777 * 120.00043 * 174.98237 * 9 7 2 12 12 C 1.46966 * 120.59305 * 4.93605 * 11 9 7 13 13 C 1.53814 * 108.39849 * 124.75935 * 12 11 9 14 14 N 1.46966 * 108.57810 * 49.63797 * 13 12 11 15 15 C 1.34777 * 120.59464 * 124.67177 * 14 13 12 16 16 O 1.21282 * 119.99735 * 179.97438 * 15 14 13 17 17 C 1.50701 * 119.99884 * 359.97438 * 15 14 13 18 18 N 1.46497 * 109.47054 * 180.02562 * 17 15 14 19 19 C 1.36832 * 125.06362 * 265.02482 * 18 17 15 20 20 C 1.34238 * 109.93158 * 180.02562 * 19 18 17 21 21 C 1.46488 * 106.99553 * 0.02562 * 20 19 18 22 22 C 1.39632 * 134.03181 * 179.97438 * 21 20 19 23 23 C 1.36627 * 119.76276 * 179.97438 * 22 21 20 24 24 C 1.38834 * 120.52940 * 0.02562 * 23 22 21 25 25 C 1.37745 * 120.66509 * 0.02562 * 24 23 22 26 26 C 1.37689 * 125.06153 * 84.72194 * 18 17 15 27 27 C 1.46968 * 118.81084 * 304.64938 * 14 13 12 28 28 C 1.46966 * 120.59464 * 185.21833 * 11 9 7 29 29 H 0.97000 * 119.99587 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.61294 * 244.54438 * 12 11 9 31 31 H 1.09002 * 109.60786 * 5.05936 * 12 11 9 32 32 H 1.09007 * 109.74220 * 289.85406 * 13 12 11 33 33 H 1.08995 * 109.67785 * 169.38601 * 13 12 11 34 34 H 1.08997 * 109.46735 * 300.00619 * 17 15 14 35 35 H 1.08997 * 109.46800 * 60.00016 * 17 15 14 36 36 H 1.08002 * 125.03486 * 359.97438 * 19 18 17 37 37 H 1.07995 * 126.49917 * 179.97438 * 20 19 18 38 38 H 1.07996 * 120.12186 * 359.97438 * 22 21 20 39 39 H 1.07999 * 119.73769 * 180.02562 * 23 22 21 40 40 H 1.08006 * 119.66691 * 180.02562 * 24 23 22 41 41 H 1.08005 * 120.11109 * 179.97438 * 25 24 23 42 42 H 1.09002 * 109.60813 * 295.47678 * 27 14 13 43 43 H 1.08999 * 109.60718 * 174.97107 * 27 14 13 44 44 H 1.08998 * 109.61138 * 354.95013 * 28 11 9 45 45 H 1.09007 * 109.60611 * 115.45945 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2759 2.7464 -0.0006 5 1 3.0945 1.6963 1.2124 6 1 3.0945 1.6964 -1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0616 -2.4824 0.0924 11 7 1.9450 -3.6455 -0.1010 12 6 3.4145 -3.6655 -0.1038 13 6 3.8894 -4.6047 1.0180 14 7 3.1635 -5.8773 0.9018 15 6 3.8335 -7.0423 0.8002 16 8 3.2235 -8.0863 0.7053 17 6 5.3405 -7.0477 0.8046 18 7 5.8242 -8.4252 0.6829 19 6 6.1719 -9.2318 1.7320 20 6 6.5727 -10.4289 1.2757 21 6 6.4742 -10.3851 -0.1852 22 6 6.7434 -11.3012 -1.2040 23 6 6.5417 -10.9448 -2.5074 24 6 6.0714 -9.6783 -2.8275 25 6 5.8004 -8.7588 -1.8384 26 6 5.9911 -9.1030 -0.5040 27 6 1.6940 -5.8568 0.8988 28 6 1.2191 -4.9182 -0.2172 29 1 -0.4849 0.8401 -0.0004 30 1 3.7736 -4.0299 -1.0662 31 1 3.7943 -2.6594 0.0741 32 1 3.6829 -4.1531 1.9884 33 1 4.9599 -4.7837 0.9181 34 1 5.7083 -6.4582 -0.0352 35 1 5.7026 -6.6162 1.7376 36 1 6.1307 -8.9472 2.7731 37 1 6.9055 -11.2653 1.8724 38 1 7.1098 -12.2880 -0.9626 39 1 6.7496 -11.6538 -3.2951 40 1 5.9165 -9.4114 -3.8626 41 1 5.4353 -7.7759 -2.0976 42 1 1.3313 -5.4944 1.8607 43 1 1.3145 -6.8623 0.7173 44 1 0.1488 -4.7395 -0.1144 45 1 1.4256 -5.3697 -1.1876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332357252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:40 Heat of formation + Delta-G solvation = 16.052121 kcal Electronic energy + Delta-G solvation = -29183.426914 eV Core-core repulsion = 25167.210642 eV Total energy + Delta-G solvation = -4016.216272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.53535 -39.97352 -38.08496 -37.02770 -35.95131 -33.40982 -32.95289 -32.58014 -31.32602 -30.41412 -28.97630 -27.84243 -27.00421 -25.78280 -23.39431 -22.84606 -22.27124 -21.61363 -20.67139 -19.86537 -18.68863 -17.64581 -17.30652 -16.61594 -16.26639 -15.96299 -15.59015 -15.45818 -15.36334 -14.64324 -14.55230 -14.34289 -14.18400 -14.03376 -13.93497 -13.42630 -13.41696 -13.08210 -12.72165 -12.70433 -12.29317 -12.11139 -11.75657 -11.70242 -11.66039 -11.51140 -11.29425 -11.13601 -11.04597 -10.93237 -10.85830 -10.35995 -10.21596 -10.03088 -9.63283 -9.01112 -8.80462 -8.23699 -7.75670 -7.74659 -7.38217 -6.33184 -4.80061 1.06775 1.56298 2.37651 2.45312 2.68251 3.05291 3.05684 3.11784 3.13109 3.87153 3.95862 4.26899 4.32983 4.41380 4.44133 4.55143 4.67912 4.73846 4.94070 5.03993 5.06464 5.14905 5.34829 5.37765 5.39203 5.46582 5.48562 5.56203 5.70392 5.79459 5.81697 5.84565 5.91053 5.98750 6.14924 6.23092 6.39716 6.40381 6.53875 6.56013 6.68319 6.70157 7.10011 7.14675 7.30475 7.34854 7.38724 7.93944 8.04386 8.16071 8.87776 9.24293 10.42119 10.60655 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.002372 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.215383 B =11803.460482 C =11933.205846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.558 3.442 10 O -0.574 6.574 11 N -0.643 5.643 12 C 0.109 3.891 13 C 0.086 3.914 14 N -0.601 5.601 15 C 0.491 3.509 16 O -0.529 6.529 17 C 0.092 3.908 18 N -0.468 5.468 19 C 0.060 3.940 20 C -0.205 4.205 21 C -0.109 4.109 22 C -0.074 4.074 23 C -0.149 4.149 24 C -0.101 4.101 25 C -0.124 4.124 26 C 0.110 3.890 27 C 0.100 3.900 28 C 0.108 3.892 29 H 0.271 0.729 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.166 0.834 37 H 0.146 0.854 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.260 -14.811 0.958 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.456 6.456 11 N -0.382 5.382 12 C -0.017 4.017 13 C -0.038 4.038 14 N -0.335 5.335 15 C 0.277 3.723 16 O -0.405 6.405 17 C -0.034 4.034 18 N -0.151 5.151 19 C -0.064 4.064 20 C -0.230 4.230 21 C -0.113 4.113 22 C -0.092 4.092 23 C -0.169 4.169 24 C -0.121 4.121 25 C -0.144 4.144 26 C 0.005 3.995 27 C -0.023 4.023 28 C -0.017 4.017 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.183 0.817 37 H 0.164 0.836 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.936 -14.915 1.026 21.132 hybrid contribution 0.429 0.987 0.078 1.079 sum 15.365 -13.927 1.104 20.767 Atomic orbital electron populations 1.69991 1.07116 1.27657 1.34593 1.25734 0.94642 1.00375 0.92538 0.86430 0.79866 0.81010 0.79475 1.20488 1.19193 1.19207 1.20892 0.93437 0.89152 1.54703 0.90928 1.18295 0.86969 0.82078 0.76166 1.90606 1.14346 1.85837 1.54836 1.48208 1.04294 1.05927 1.79771 1.21880 0.83556 1.00488 0.95727 1.22472 0.95475 0.84265 1.01568 1.48121 1.07676 1.06009 1.71739 1.20856 0.89953 0.83950 0.77533 1.90750 1.69309 1.31163 1.49251 1.21649 0.92798 0.82720 1.06205 1.43426 1.55606 1.11236 1.04817 1.21760 1.01233 0.91003 0.92402 1.21615 1.11204 0.97923 0.92266 1.19193 1.04776 0.93638 0.93705 1.20230 0.99241 0.98163 0.91585 1.20597 1.03311 0.96858 0.96097 1.20781 0.99437 0.93407 0.98450 1.20036 1.04608 1.00467 0.89331 1.18185 1.01909 0.92282 0.87119 1.22119 0.78338 1.01422 1.00417 1.21509 0.99357 0.85043 0.95798 0.91848 0.93375 0.87412 0.90286 0.90047 0.86662 0.86238 0.81673 0.83641 0.86268 0.86243 0.85898 0.86643 0.91084 0.88978 0.88434 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.94 11.84 55.55 0.66 -21.28 16 2 C 0.09 2.30 5.50 -17.36 -0.10 2.20 16 3 Si 0.91 18.84 29.56 -169.99 -5.02 13.82 16 4 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 7 C -0.55 -14.15 8.87 -35.63 -0.32 -14.47 16 8 H 0.07 1.66 5.66 -52.49 -0.30 1.36 16 9 C 0.56 14.87 7.62 -12.99 -0.10 14.77 16 10 O -0.57 -17.73 14.45 5.20 0.08 -17.65 16 11 N -0.64 -13.40 2.94 -173.88 -0.51 -13.92 16 12 C 0.11 1.71 6.51 -3.36 -0.02 1.69 16 13 C 0.09 1.04 6.52 -3.36 -0.02 1.02 16 14 N -0.60 -8.38 2.95 -172.21 -0.51 -8.89 16 15 C 0.49 6.80 7.77 -10.98 -0.09 6.72 16 16 O -0.53 -9.49 15.82 5.56 0.09 -9.40 16 17 C 0.09 0.91 4.82 -5.19 -0.03 0.89 16 18 N -0.47 -5.58 2.27 -115.71 -0.26 -5.84 16 19 C 0.06 0.64 11.27 -16.73 -0.19 0.45 16 20 C -0.21 -2.28 11.08 -37.67 -0.42 -2.69 16 21 C -0.11 -1.39 6.37 -105.14 -0.67 -2.06 16 22 C -0.07 -0.82 10.05 -39.64 -0.40 -1.22 16 23 C -0.15 -1.56 9.97 -39.94 -0.40 -1.96 16 24 C -0.10 -1.12 10.01 -39.54 -0.40 -1.51 16 25 C -0.12 -1.55 10.00 -39.43 -0.39 -1.94 16 26 C 0.11 1.47 6.80 -83.99 -0.57 0.90 16 27 C 0.10 1.61 6.59 -3.60 -0.02 1.58 16 28 C 0.11 2.02 6.60 -3.60 -0.02 2.00 16 29 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.11 1.73 5.34 -51.93 -0.28 1.45 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.65 5.91 -51.93 -0.31 0.34 16 34 H 0.12 0.94 7.72 -51.93 -0.40 0.54 16 35 H 0.12 0.81 7.88 -51.93 -0.41 0.40 16 36 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 41 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.09 1.49 6.99 -51.93 -0.36 1.12 16 44 H 0.10 2.04 6.99 -51.93 -0.36 1.68 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -36.73 373.21 -9.79 -46.51 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.78 Total: 4.66 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -4.15 Total: 6.37 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.62 Total: -49.93 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: 0.16 Total: -27.06 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.73 -9.79 -46.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332357252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.565 kcal (2) G-P(sol) polarization free energy of solvation -36.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds