Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99732 * 2 1 4 4 H 1.48500 * 109.47209 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47222 * 299.99411 * 3 2 1 6 6 H 1.48500 * 109.47488 * 59.99713 * 3 2 1 7 7 C 1.37871 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00545 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47251 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47462 * 180.02562 * 10 9 7 12 12 C 1.34771 * 120.00119 * 179.97438 * 11 10 9 13 13 O 1.21590 * 120.00161 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00178 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00245 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47214 * 179.97438 * 15 14 12 17 17 O 1.21292 * 120.00078 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00265 * 179.97438 * 16 15 14 19 19 C 1.39612 * 120.00292 * 185.52067 * 18 16 15 20 20 C 1.37817 * 120.29694 * 24.87275 * 19 18 16 21 21 C 1.39168 * 120.75143 * 179.97438 * 20 19 18 22 22 C 1.36163 * 121.08012 * 0.06606 * 21 20 19 23 23 C 1.40510 * 119.95487 * 359.95469 * 22 21 20 24 24 C 1.40582 * 121.20531 * 180.02562 * 23 22 21 25 25 C 1.36088 * 119.66096 * 179.97438 * 24 23 22 26 26 C 1.39357 * 120.97872 * 0.02562 * 25 24 23 27 27 C 1.36149 * 120.95820 * 359.97438 * 26 25 24 28 28 C 1.40369 * 119.67184 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00131 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47120 * 59.99849 * 9 7 2 31 31 H 1.08997 * 109.47512 * 299.99976 * 9 7 2 32 32 H 1.08997 * 109.47282 * 59.99582 * 10 9 7 33 33 H 1.09006 * 109.46673 * 300.00156 * 10 9 7 34 34 H 0.97006 * 119.99868 * 0.02562 * 11 10 9 35 35 H 0.97004 * 119.99290 * 359.97438 * 14 12 11 36 36 H 1.09003 * 109.47259 * 59.99677 * 15 14 12 37 37 H 1.09001 * 109.46688 * 299.99320 * 15 14 12 38 38 H 0.96998 * 119.99556 * 5.51818 * 18 16 15 39 39 H 1.08009 * 119.62764 * 0.04818 * 20 19 18 40 40 H 1.08003 * 119.45917 * 180.02562 * 21 20 19 41 41 H 1.08003 * 120.01823 * 180.23340 * 22 21 20 42 42 H 1.08005 * 120.16513 * 359.96112 * 24 23 22 43 43 H 1.08001 * 119.51806 * 179.97438 * 25 24 23 44 44 H 1.07995 * 119.52272 * 179.97438 * 26 25 24 45 45 H 1.08007 * 120.16386 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5129 -4.9308 -0.0001 12 6 2.1868 -6.0979 -0.0007 13 8 3.4027 -6.0980 -0.0012 14 7 1.5129 -7.2652 -0.0018 15 6 2.2454 -8.5339 -0.0019 16 6 1.2661 -9.6794 -0.0026 17 8 0.0736 -9.4578 -0.0034 18 7 1.7153 -10.9500 -0.0033 19 6 0.8134 -12.0093 -0.1203 20 6 -0.4086 -11.8181 -0.7282 21 6 -1.3145 -12.8674 -0.8503 22 6 -1.0212 -14.1085 -0.3731 23 6 0.2138 -14.3452 0.2538 24 6 0.5441 -15.6163 0.7555 25 6 1.7495 -15.8106 1.3566 26 6 2.6642 -14.7670 1.4838 27 6 2.3780 -13.5232 1.0097 28 6 1.1449 -13.2853 0.3827 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8902 32 1 2.8720 -3.6043 0.8904 33 1 2.8720 -3.6042 -0.8895 34 1 0.5428 -4.9308 -0.0008 35 1 0.5429 -7.2651 -0.0018 36 1 2.8715 -8.5921 0.8885 37 1 2.8726 -8.5912 -0.8916 38 1 2.6653 -11.1286 0.0773 39 1 -0.6656 -10.8430 -1.1153 40 1 -2.2662 -12.6943 -1.3309 41 1 -1.7355 -14.9114 -0.4805 42 1 -0.1553 -16.4342 0.6644 43 1 2.0007 -16.7880 1.7415 44 1 3.6138 -14.9474 1.9654 45 1 3.0966 -12.7238 1.1148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343991936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = -44.594003 kcal Electronic energy + Delta-G solvation = -27156.183848 eV Core-core repulsion = 23137.337763 eV Total energy + Delta-G solvation = -4018.846086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.15297 -41.11805 -40.37296 -37.47713 -36.69970 -36.21984 -35.48902 -34.79413 -32.76763 -31.62838 -31.24292 -30.05511 -28.42304 -26.44861 -24.51342 -24.16745 -23.26517 -22.76756 -21.95099 -21.49463 -19.99497 -19.13152 -18.63511 -18.40018 -17.54299 -17.43637 -17.15148 -16.95033 -16.53684 -16.46483 -16.35635 -15.62228 -15.29276 -15.17243 -14.97532 -14.80889 -14.68077 -14.45747 -14.35117 -14.25663 -13.81029 -13.59536 -13.19289 -13.08050 -12.93618 -12.57811 -12.49640 -12.23286 -12.09990 -11.92778 -11.71243 -11.67734 -11.50997 -11.24068 -11.04035 -10.60486 -10.44747 -10.30334 -9.79225 -9.58303 -8.51167 -8.22749 -6.33120 -0.45887 0.05113 0.87024 1.34839 1.42474 1.42531 1.44297 1.56863 2.02661 2.10649 2.12962 2.42705 3.12284 3.15626 3.29504 3.39136 3.71386 3.84331 3.93524 4.12817 4.26891 4.28529 4.33787 4.35356 4.47753 4.49652 4.51385 4.54602 4.68995 4.88243 4.89359 4.97204 5.16318 5.25167 5.31678 5.33043 5.35920 5.47283 5.51356 5.56666 5.60701 5.65038 5.79065 5.89836 5.95772 6.07859 6.17865 6.18854 6.80650 6.81369 7.03085 7.36316 7.51933 8.89420 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.031590 B = 0.001525 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.132604 B =18356.682091 C =19070.827412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.020 3.980 10 C 0.161 3.839 11 N -0.733 5.733 12 C 0.705 3.295 13 O -0.631 6.631 14 N -0.732 5.732 15 C 0.124 3.876 16 C 0.517 3.483 17 O -0.541 6.541 18 N -0.648 5.648 19 C 0.142 3.858 20 C -0.154 4.154 21 C -0.105 4.105 22 C -0.126 4.126 23 C -0.055 4.055 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.117 4.117 27 C -0.122 4.122 28 C -0.081 4.081 29 H 0.265 0.735 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.406 0.594 35 H 0.412 0.588 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.429 0.571 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 -37.073 0.938 37.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.017 4.017 10 C 0.037 3.963 11 N -0.388 5.388 12 C 0.405 3.595 13 O -0.512 6.512 14 N -0.391 5.391 15 C -0.003 4.003 16 C 0.305 3.695 17 O -0.417 6.417 18 N -0.293 5.293 19 C 0.047 3.953 20 C -0.175 4.175 21 C -0.123 4.123 22 C -0.144 4.144 23 C -0.056 4.056 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.135 4.135 27 C -0.140 4.140 28 C -0.083 4.083 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.241 0.759 35 H 0.250 0.750 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.269 0.731 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.167 0.833 43 H 0.166 0.834 44 H 0.165 0.835 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.918 -36.723 0.929 36.785 hybrid contribution -0.405 1.136 -0.025 1.206 sum 1.513 -35.587 0.905 35.631 Atomic orbital electron populations 1.70078 1.07605 1.27886 1.51181 1.25890 0.95783 1.03171 0.94460 0.85369 0.79036 0.78676 0.77794 1.18770 1.20321 1.20336 1.21501 0.93693 0.91781 1.51283 0.92036 1.19164 0.94354 0.91865 0.96341 1.21109 0.94537 0.80710 0.99957 1.45243 1.10482 1.04522 1.78520 1.15914 0.85034 0.80820 0.77736 1.90871 1.13018 1.87224 1.60122 1.44640 1.10802 1.03142 1.80530 1.20952 0.92865 0.79869 1.06632 1.20811 0.89483 0.84264 0.74935 1.90695 1.17827 1.84487 1.48734 1.43117 1.11415 1.03677 1.71108 1.17752 0.91882 0.87050 0.98641 1.21396 0.94307 1.01071 1.00699 1.20951 0.99727 0.92416 0.99240 1.21287 0.96244 0.97942 0.98967 1.18241 0.94282 0.93905 0.99123 1.21341 0.98115 0.95649 0.97962 1.21259 0.93649 1.00350 0.98318 1.21203 1.00683 0.92501 0.99082 1.21094 0.95336 0.98806 0.98775 1.17979 0.96704 0.92135 1.01462 0.92620 0.97384 0.97389 0.93412 0.93417 0.75911 0.75022 0.86627 0.86585 0.73129 0.85138 0.84171 0.83112 0.83274 0.83423 0.83514 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.04 5.09 29.85 0.15 1.19 16 10 C 0.16 6.99 5.61 86.38 0.48 7.47 16 11 N -0.73 -26.24 5.56 -478.53 -2.66 -28.90 16 12 C 0.71 24.03 8.57 179.05 1.53 25.57 16 13 O -0.63 -25.55 16.34 -4.00 -0.07 -25.62 16 14 N -0.73 -18.58 5.53 -482.29 -2.67 -21.25 16 15 C 0.12 2.31 6.16 85.63 0.53 2.83 16 16 C 0.52 9.77 7.70 87.66 0.67 10.45 16 17 O -0.54 -13.81 12.84 -3.07 -0.04 -13.85 16 18 N -0.65 -9.45 5.16 -302.81 -1.56 -11.02 16 19 C 0.14 2.64 6.44 38.51 0.25 2.89 16 20 C -0.15 -3.21 8.70 22.39 0.19 -3.01 16 21 C -0.10 -1.77 9.94 22.01 0.22 -1.55 16 22 C -0.13 -1.82 9.75 22.34 0.22 -1.60 16 23 C -0.05 -0.86 5.74 -21.31 -0.12 -0.98 16 24 C -0.11 -1.25 9.77 22.34 0.22 -1.03 16 25 C -0.12 -1.08 9.95 22.04 0.22 -0.86 16 26 C -0.12 -1.12 9.95 22.05 0.22 -0.90 16 27 C -0.12 -1.47 9.46 22.30 0.21 -1.26 16 28 C -0.08 -1.35 5.75 -21.21 -0.12 -1.47 16 29 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 30 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.41 12.83 8.49 -92.70 -0.79 12.04 16 35 H 0.41 9.91 7.45 -92.70 -0.69 9.22 16 36 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.43 3.31 7.25 -92.71 -0.67 2.64 16 39 H 0.13 3.12 5.75 -2.91 -0.02 3.10 16 40 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 42 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 43 H 0.15 0.57 8.06 -2.91 -0.02 0.55 16 44 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16 45 H 0.14 1.01 6.70 -2.91 -0.02 0.99 16 Total: -1.00 -75.74 383.56 -0.21 -75.95 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -1.09 Total: 25.26 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 5.57 Total: 8.21 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -6.61 Total: -115.79 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.10 Total: -39.47 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -75.74 -0.21 -75.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343991936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.353 kcal (2) G-P(sol) polarization free energy of solvation -75.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds