Wall clock time and date at job start Sat Apr 11 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99951 * 2 1 4 4 H 1.48497 * 109.47346 * 269.99838 * 3 2 1 5 5 H 1.48500 * 109.47277 * 30.00445 * 3 2 1 6 6 H 1.48504 * 109.47051 * 149.99865 * 3 2 1 7 7 C 1.38950 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00142 * 359.97438 * 7 2 1 9 9 N 1.37099 * 120.00256 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00345 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99769 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99945 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46848 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00115 * 180.02562 * 13 12 10 15 15 O 1.21288 * 119.99593 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.35059 * 125.75390 * 85.02524 * 18 17 16 20 20 C 1.40439 * 107.68866 * 179.97438 * 19 18 17 21 21 C 1.36245 * 107.33422 * 0.02562 * 20 19 18 22 22 C 1.47854 * 126.06038 * 180.02562 * 21 20 19 23 23 C 1.39568 * 120.14507 * 179.70034 * 22 21 20 24 24 C 1.37967 * 119.85338 * 179.69972 * 23 22 21 25 25 C 1.38350 * 120.14322 * 0.59290 * 24 23 22 26 26 C 1.38364 * 120.29299 * 359.68348 * 25 24 23 27 27 C 1.37966 * 120.14149 * 0.02562 * 26 25 24 28 28 N 1.36308 * 125.75743 * 264.71756 * 18 17 16 29 29 H 0.97000 * 125.69652 * 359.97438 * 28 18 17 30 30 H 0.97000 * 119.99789 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99564 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47002 * 60.00796 * 12 10 9 33 33 H 1.08992 * 109.47459 * 299.99834 * 12 10 9 34 34 H 0.97003 * 120.00244 * 0.02562 * 13 12 10 35 35 H 1.09002 * 109.47120 * 59.99760 * 16 14 13 36 36 H 1.08998 * 109.46862 * 300.00562 * 16 14 13 37 37 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 38 38 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 39 39 H 1.08003 * 126.16091 * 0.03327 * 19 18 17 40 40 H 1.08000 * 126.33725 * 179.97438 * 20 19 18 41 41 H 1.07994 * 120.06884 * 359.97158 * 23 22 21 42 42 H 1.07996 * 119.92487 * 180.29373 * 24 23 22 43 43 H 1.07994 * 119.85816 * 179.70027 * 25 24 23 44 44 H 1.07993 * 119.92961 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.07384 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4210 -0.0011 12 6 5.5608 -2.3705 -0.0011 13 7 6.0491 -3.7517 -0.0017 14 6 7.3742 -3.9981 -0.0013 15 8 8.1623 -3.0761 0.0001 16 6 7.8766 -5.4188 -0.0025 17 6 9.4065 -5.4188 -0.0011 18 6 9.9089 -6.8397 -0.0017 19 6 10.0833 -7.6146 -1.0940 20 6 10.5641 -8.8609 -0.6607 21 6 10.6682 -8.8062 0.6967 22 6 11.1354 -9.8973 1.5784 23 6 11.1992 -9.7040 2.9592 24 6 11.6302 -10.7282 3.7769 25 6 12.0103 -11.9408 3.2298 26 6 11.9549 -12.1371 1.8613 27 6 11.5201 -11.1230 1.0330 28 7 10.2694 -7.5575 1.0996 29 1 10.2458 -7.2390 2.0155 30 1 -0.4850 0.8401 -0.0004 31 1 3.8648 -0.3633 -0.0007 32 1 5.9241 -1.8567 0.8890 33 1 5.9241 -1.8567 -0.8910 34 1 5.4188 -4.4891 -0.0024 35 1 7.5136 -5.9318 -0.8932 36 1 7.5127 -5.9336 0.8867 37 1 9.7691 -4.9060 0.8898 38 1 9.7706 -4.9040 -0.8901 39 1 9.8890 -7.3272 -2.1168 40 1 10.8058 -9.7067 -1.2873 41 1 10.9077 -8.7562 3.3869 42 1 11.6755 -10.5815 4.8458 43 1 12.3515 -12.7378 3.8738 44 1 12.2526 -13.0861 1.4406 45 1 11.4769 -11.2776 -0.0350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344160296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:50 Heat of formation + Delta-G solvation = -13.934556 kcal Electronic energy + Delta-G solvation = -26700.724014 eV Core-core repulsion = 22683.207422 eV Total energy + Delta-G solvation = -4017.516592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.56250 -39.74800 -39.13515 -38.34351 -34.61345 -34.00887 -33.77554 -31.91083 -31.81000 -31.78899 -30.85856 -28.76579 -27.25639 -24.90572 -23.82609 -23.13327 -22.34571 -20.65445 -20.27445 -20.03211 -19.63682 -18.64996 -18.19598 -17.17579 -16.38378 -15.91398 -15.86696 -15.45921 -15.27869 -15.08370 -14.86145 -14.63056 -14.59758 -14.07792 -13.88554 -13.77538 -13.50599 -13.21689 -13.14531 -12.99386 -12.79423 -12.52307 -12.36090 -12.17980 -12.12487 -11.93119 -11.65824 -11.40731 -11.27037 -11.23018 -10.67246 -10.09558 -9.91595 -9.73169 -9.73053 -9.38298 -9.13654 -8.94251 -8.81219 -8.33740 -7.80024 -6.43739 -3.96523 0.58694 0.98262 2.10807 2.69571 2.72717 2.87736 2.96854 3.01635 3.09888 3.29953 3.52483 3.54972 4.00728 4.32754 4.42905 4.48257 4.53250 4.57776 4.71381 4.80707 4.83089 5.00501 5.07352 5.10928 5.14597 5.18391 5.28804 5.41390 5.47781 5.56039 5.65105 5.66325 5.74212 5.77427 5.83329 5.86543 5.94616 6.06860 6.10327 6.21891 6.51581 6.53828 6.73927 6.84585 7.25608 7.40679 7.67611 7.97012 8.30151 8.42605 8.78528 9.26529 9.59831 10.68367 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.001482 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.219195 B =18891.348423 C =19241.897688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.437 3.563 11 O -0.579 6.579 12 C 0.106 3.894 13 N -0.708 5.708 14 C 0.511 3.489 15 O -0.552 6.552 16 C -0.134 4.134 17 C -0.036 4.036 18 C 0.038 3.962 19 C -0.193 4.193 20 C -0.167 4.167 21 C 0.041 3.959 22 C -0.007 4.007 23 C -0.127 4.127 24 C -0.111 4.111 25 C -0.128 4.128 26 C -0.112 4.112 27 C -0.107 4.107 28 N -0.549 5.549 29 H 0.412 0.588 30 H 0.276 0.724 31 H 0.374 0.626 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.413 0.587 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.649 -19.113 3.481 32.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.440 4.440 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.223 3.777 11 O -0.464 6.464 12 C -0.022 4.022 13 N -0.362 5.362 14 C 0.298 3.702 15 O -0.431 6.431 16 C -0.174 4.174 17 C -0.074 4.074 18 C -0.076 4.076 19 C -0.218 4.218 20 C -0.192 4.192 21 C -0.070 4.070 22 C -0.007 4.007 23 C -0.145 4.145 24 C -0.129 4.129 25 C -0.146 4.146 26 C -0.130 4.130 27 C -0.126 4.126 28 N -0.144 5.144 29 H 0.249 0.751 30 H 0.086 0.914 31 H 0.208 0.792 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.251 0.749 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 25.541 -18.952 3.625 32.010 hybrid contribution 0.100 1.230 0.502 1.332 sum 25.641 -17.721 4.126 31.441 Atomic orbital electron populations 1.69618 1.05719 1.27846 1.48038 1.25065 0.95528 0.98166 0.97080 0.86669 0.79886 0.83759 0.79159 1.19359 1.19953 1.19268 1.19448 0.78960 0.96819 1.48759 0.86075 1.42127 1.07714 1.06142 1.65334 1.19649 0.88079 0.84894 0.85115 1.90544 1.69202 1.30894 1.55712 1.20976 0.93770 0.84181 1.03298 1.45746 1.07163 1.09173 1.74120 1.20590 0.82056 0.91472 0.76113 1.90692 1.55413 1.46473 1.50501 1.21636 0.96405 0.94183 1.05225 1.19877 0.93297 0.89215 1.05033 1.20445 1.05834 0.95105 0.86234 1.20676 1.08780 0.94280 0.98020 1.20908 1.06981 0.98889 0.92422 1.18643 1.09306 0.85765 0.93325 1.18109 0.98574 0.92207 0.91857 1.21093 1.01475 0.99276 0.92698 1.21044 0.98803 0.93304 0.99777 1.21216 1.00575 0.97469 0.95325 1.21100 0.99323 0.98927 0.93630 1.21107 0.99193 0.92042 1.00233 1.41984 1.52373 1.11160 1.08853 0.75089 0.91353 0.79244 0.89783 0.89697 0.74907 0.88073 0.88954 0.90442 0.88542 0.84262 0.84480 0.86687 0.85884 0.85991 0.85673 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.76 13.96 55.50 0.77 -23.99 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 3 Si 0.88 18.82 27.74 -169.99 -4.71 14.10 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 7 C -0.31 -8.51 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 9 N -0.58 -13.22 5.09 -10.96 -0.06 -13.28 16 10 C 0.44 9.43 7.85 -10.99 -0.09 9.35 16 11 O -0.58 -14.42 15.24 5.54 0.08 -14.33 16 12 C 0.11 1.77 6.15 -5.19 -0.03 1.74 16 13 N -0.71 -10.63 5.53 -61.47 -0.34 -10.97 16 14 C 0.51 6.99 7.83 -10.99 -0.09 6.91 16 15 O -0.55 -9.15 15.98 5.55 0.09 -9.06 16 16 C -0.13 -1.30 5.68 -27.89 -0.16 -1.46 16 17 C -0.04 -0.33 5.04 -27.88 -0.14 -0.47 16 18 C 0.04 0.35 6.41 -81.73 -0.52 -0.17 16 19 C -0.19 -1.86 10.73 -39.88 -0.43 -2.29 16 20 C -0.17 -1.58 10.23 -39.47 -0.40 -1.98 16 21 C 0.04 0.38 6.92 -82.27 -0.57 -0.19 16 22 C -0.01 -0.06 5.87 -104.97 -0.62 -0.67 16 23 C -0.13 -0.97 9.71 -39.19 -0.38 -1.35 16 24 C -0.11 -0.75 10.03 -39.64 -0.40 -1.15 16 25 C -0.13 -0.81 10.04 -39.49 -0.40 -1.21 16 26 C -0.11 -0.72 10.03 -39.63 -0.40 -1.12 16 27 C -0.11 -0.81 9.56 -39.19 -0.37 -1.18 16 28 N -0.55 -4.70 5.99 -5.76 -0.03 -4.74 16 29 H 0.41 2.67 8.08 -40.82 -0.33 2.34 16 30 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.41 6.14 7.44 -40.82 -0.30 5.84 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.10 0.94 8.10 -51.93 -0.42 0.52 16 39 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 40 H 0.14 1.05 7.26 -52.49 -0.38 0.66 16 41 H 0.12 0.70 7.18 -52.49 -0.38 0.33 16 42 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.13 0.78 7.00 -52.49 -0.37 0.41 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -33.67 387.41 -9.37 -43.04 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -5.77 Total: 16.17 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -5.24 Total: -2.79 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.34 Total: -52.97 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.17 Total: -23.39 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.71 Total: 14.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.67 -9.37 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344160296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.104 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds