Wall clock time and date at job start Sat Apr 11 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99951 * 2 1 4 4 H 1.48497 * 109.47346 * 269.99838 * 3 2 1 5 5 H 1.48500 * 109.47277 * 30.00445 * 3 2 1 6 6 H 1.48504 * 109.47051 * 149.99865 * 3 2 1 7 7 C 1.38950 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00142 * 359.97438 * 7 2 1 9 9 N 1.37099 * 120.00256 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00345 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99769 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99945 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46848 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00115 * 180.02562 * 13 12 10 15 15 O 1.21288 * 119.99593 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.35059 * 125.75390 * 85.02524 * 18 17 16 20 20 C 1.40439 * 107.68866 * 179.97438 * 19 18 17 21 21 C 1.36245 * 107.33422 * 0.02562 * 20 19 18 22 22 C 1.47854 * 126.06038 * 180.02562 * 21 20 19 23 23 C 1.39568 * 120.14507 * 179.70034 * 22 21 20 24 24 C 1.37967 * 119.85338 * 179.69972 * 23 22 21 25 25 C 1.38350 * 120.14322 * 0.59290 * 24 23 22 26 26 C 1.38364 * 120.29299 * 359.68348 * 25 24 23 27 27 C 1.37966 * 120.14149 * 0.02562 * 26 25 24 28 28 N 1.36308 * 125.75743 * 264.71756 * 18 17 16 29 29 H 0.97000 * 125.69652 * 359.97438 * 28 18 17 30 30 H 0.97000 * 119.99789 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99564 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47002 * 60.00796 * 12 10 9 33 33 H 1.08992 * 109.47459 * 299.99834 * 12 10 9 34 34 H 0.97003 * 120.00244 * 0.02562 * 13 12 10 35 35 H 1.09002 * 109.47120 * 59.99760 * 16 14 13 36 36 H 1.08998 * 109.46862 * 300.00562 * 16 14 13 37 37 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 38 38 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 39 39 H 1.08003 * 126.16091 * 0.03327 * 19 18 17 40 40 H 1.08000 * 126.33725 * 179.97438 * 20 19 18 41 41 H 1.07994 * 120.06884 * 359.97158 * 23 22 21 42 42 H 1.07996 * 119.92487 * 180.29373 * 24 23 22 43 43 H 1.07994 * 119.85816 * 179.70027 * 25 24 23 44 44 H 1.07993 * 119.92961 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.07384 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4210 -0.0011 12 6 5.5608 -2.3705 -0.0011 13 7 6.0491 -3.7517 -0.0017 14 6 7.3742 -3.9981 -0.0013 15 8 8.1623 -3.0761 0.0001 16 6 7.8766 -5.4188 -0.0025 17 6 9.4065 -5.4188 -0.0011 18 6 9.9089 -6.8397 -0.0017 19 6 10.0833 -7.6146 -1.0940 20 6 10.5641 -8.8609 -0.6607 21 6 10.6682 -8.8062 0.6967 22 6 11.1354 -9.8973 1.5784 23 6 11.1992 -9.7040 2.9592 24 6 11.6302 -10.7282 3.7769 25 6 12.0103 -11.9408 3.2298 26 6 11.9549 -12.1371 1.8613 27 6 11.5201 -11.1230 1.0330 28 7 10.2694 -7.5575 1.0996 29 1 10.2458 -7.2390 2.0155 30 1 -0.4850 0.8401 -0.0004 31 1 3.8648 -0.3633 -0.0007 32 1 5.9241 -1.8567 0.8890 33 1 5.9241 -1.8567 -0.8910 34 1 5.4188 -4.4891 -0.0024 35 1 7.5136 -5.9318 -0.8932 36 1 7.5127 -5.9336 0.8867 37 1 9.7691 -4.9060 0.8898 38 1 9.7706 -4.9040 -0.8901 39 1 9.8890 -7.3272 -2.1168 40 1 10.8058 -9.7067 -1.2873 41 1 10.9077 -8.7562 3.3869 42 1 11.6755 -10.5815 4.8458 43 1 12.3515 -12.7378 3.8738 44 1 12.2526 -13.0861 1.4406 45 1 11.4769 -11.2776 -0.0350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344160296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:49 Heat of formation + Delta-G solvation = -36.322719 kcal Electronic energy + Delta-G solvation = -26701.694838 eV Core-core repulsion = 22683.207422 eV Total energy + Delta-G solvation = -4018.487416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.22404 -41.03295 -40.01654 -39.62944 -36.30858 -35.32621 -34.78075 -33.84170 -32.48861 -32.37568 -31.43398 -29.96208 -28.28844 -26.39337 -24.92086 -23.66174 -22.96798 -21.47865 -21.38967 -21.27579 -20.71386 -20.47077 -18.87695 -18.34343 -17.38838 -17.11075 -16.98905 -16.75019 -16.52167 -16.11952 -15.77007 -15.68199 -15.45846 -15.13955 -14.77735 -14.66880 -14.61085 -14.31625 -14.18581 -14.02646 -13.91441 -13.67774 -13.49759 -13.38967 -13.02427 -12.96459 -12.74045 -12.45565 -12.15566 -12.01082 -11.98517 -11.88782 -11.58866 -11.02395 -10.66525 -10.34262 -10.33333 -10.15962 -9.88543 -9.81575 -8.46373 -8.45064 -6.08581 0.02843 0.48014 1.30361 1.33541 1.43098 1.44450 1.60919 1.79483 1.99542 2.12546 2.19895 2.30125 2.88917 3.00883 3.09968 3.65040 3.76853 3.95571 3.98457 4.03562 4.08370 4.09433 4.27458 4.29920 4.41341 4.45049 4.49875 4.54910 4.58989 4.63691 4.71707 4.90976 4.97833 5.10968 5.13523 5.22672 5.28699 5.33939 5.47963 5.53461 5.61130 5.61844 5.87426 6.05133 6.07295 6.16821 6.47023 6.51966 6.65069 6.77609 7.16492 7.29423 7.77571 8.70085 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.001482 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.219195 B =18891.348423 C =19241.897688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.007 4.007 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.233 1.233 7 C -0.333 4.333 8 H 0.063 0.937 9 N -0.578 5.578 10 C 0.444 3.556 11 O -0.615 6.615 12 C 0.117 3.883 13 N -0.713 5.713 14 C 0.516 3.484 15 O -0.579 6.579 16 C -0.125 4.125 17 C -0.027 4.027 18 C 0.031 3.969 19 C -0.206 4.206 20 C -0.185 4.185 21 C 0.036 3.964 22 C -0.029 4.029 23 C -0.138 4.138 24 C -0.121 4.121 25 C -0.131 4.131 26 C -0.118 4.118 27 C -0.118 4.118 28 N -0.546 5.546 29 H 0.420 0.580 30 H 0.281 0.719 31 H 0.392 0.608 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.414 0.586 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.124 0.876 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.397 -18.830 4.034 34.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.462 4.462 8 H 0.081 0.919 9 N -0.218 5.218 10 C 0.231 3.769 11 O -0.501 6.501 12 C -0.011 4.011 13 N -0.367 5.367 14 C 0.304 3.696 15 O -0.459 6.459 16 C -0.165 4.165 17 C -0.065 4.065 18 C -0.083 4.083 19 C -0.230 4.230 20 C -0.209 4.209 21 C -0.075 4.075 22 C -0.029 4.029 23 C -0.157 4.157 24 C -0.139 4.139 25 C -0.149 4.149 26 C -0.136 4.136 27 C -0.137 4.137 28 N -0.142 5.142 29 H 0.259 0.741 30 H 0.091 0.909 31 H 0.228 0.772 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.252 0.748 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.142 0.858 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.164 0.836 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 28.317 -18.688 4.187 34.185 hybrid contribution -0.744 0.938 0.357 1.249 sum 27.573 -17.749 4.544 33.105 Atomic orbital electron populations 1.69782 1.08060 1.29468 1.49227 1.26064 0.96411 1.02583 0.95651 0.85439 0.79552 0.77006 0.80074 1.18077 1.19848 1.15597 1.19038 0.81032 0.95267 1.50882 0.91910 1.41937 1.06114 1.07483 1.66263 1.20574 0.90200 0.83830 0.82285 1.90533 1.70836 1.32323 1.56419 1.20877 0.89342 0.85808 1.05056 1.45833 1.07836 1.08403 1.74626 1.21155 0.81036 0.92676 0.74726 1.90684 1.55812 1.47712 1.51677 1.21636 0.96609 0.91613 1.06598 1.19762 0.92829 0.89154 1.04783 1.20411 1.06338 0.95061 0.86461 1.20903 1.08973 0.94535 0.98611 1.21157 1.07537 0.99401 0.92847 1.18887 1.08913 0.86126 0.93622 1.18262 0.99837 0.92524 0.92319 1.21314 1.01647 1.00127 0.92602 1.21344 0.98489 0.93285 1.00736 1.21570 0.99744 0.97912 0.95687 1.21412 0.98816 0.99526 0.93814 1.21338 0.99243 0.92091 1.01002 1.42001 1.52012 1.10933 1.09224 0.74135 0.90916 0.77223 0.87927 0.87798 0.74830 0.86689 0.87458 0.90541 0.89007 0.83507 0.83391 0.85780 0.84131 0.83859 0.83589 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.10 13.96 21.66 0.30 -53.80 16 2 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 3 Si 0.96 37.70 27.74 68.60 1.90 39.60 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 6 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 7 C -0.33 -18.79 10.16 84.04 0.85 -17.94 16 8 H 0.06 4.19 7.39 -2.91 -0.02 4.17 16 9 N -0.58 -26.22 5.09 -306.98 -1.56 -27.78 16 10 C 0.44 18.94 7.85 87.66 0.69 19.63 16 11 O -0.62 -31.22 15.24 -3.09 -0.05 -31.27 16 12 C 0.12 3.66 6.15 85.63 0.53 4.19 16 13 N -0.71 -20.17 5.53 -466.79 -2.58 -22.75 16 14 C 0.52 13.07 7.83 87.66 0.69 13.75 16 15 O -0.58 -17.96 15.98 -3.05 -0.05 -18.01 16 16 C -0.12 -2.18 5.68 29.85 0.17 -2.01 16 17 C -0.03 -0.46 5.04 29.85 0.15 -0.31 16 18 C 0.03 0.55 6.41 41.13 0.26 0.81 16 19 C -0.21 -3.79 10.73 22.07 0.24 -3.55 16 20 C -0.18 -3.38 10.23 22.34 0.23 -3.15 16 21 C 0.04 0.66 6.92 40.40 0.28 0.93 16 22 C -0.03 -0.47 5.87 -20.09 -0.12 -0.59 16 23 C -0.14 -1.99 9.71 22.53 0.22 -1.77 16 24 C -0.12 -1.44 10.03 22.23 0.22 -1.22 16 25 C -0.13 -1.41 10.04 22.33 0.22 -1.19 16 26 C -0.12 -1.34 10.03 22.24 0.22 -1.11 16 27 C -0.12 -1.68 9.56 22.53 0.22 -1.46 16 28 N -0.55 -8.85 5.99 -172.15 -1.03 -9.88 16 29 H 0.42 5.03 8.08 -92.71 -0.75 4.28 16 30 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.39 14.86 5.76 -92.71 -0.53 14.33 16 32 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.41 11.85 7.44 -92.71 -0.69 11.16 16 35 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 38 H 0.09 1.67 8.10 -2.39 -0.02 1.65 16 39 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.15 2.19 7.26 -2.91 -0.02 2.17 16 41 H 0.12 1.40 7.18 -2.91 -0.02 1.38 16 42 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 43 H 0.14 0.86 8.06 -2.91 -0.02 0.83 16 44 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 45 H 0.14 1.56 7.00 -2.91 -0.02 1.54 16 Total: -1.00 -75.78 387.41 1.50 -74.28 By element: Atomic # 1 Polarization: 45.47 SS G_CDS: -0.97 Total: 44.49 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 5.54 Total: 5.10 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -4.87 Total: -114.21 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.10 Total: -49.27 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 1.90 Total: 39.60 kcal Total: -75.78 1.50 -74.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344160296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.958 kcal (2) G-P(sol) polarization free energy of solvation -75.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds