Wall clock time and date at job start Sat Apr 11 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34971 * 125.97907 * 124.99763 * 10 9 7 12 12 C 1.35235 * 107.86261 * 179.97438 * 11 10 9 13 13 C 1.40404 * 107.87251 * 0.02562 * 12 11 10 14 14 N 1.40155 * 125.97676 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99935 * 0.02562 * 14 13 12 16 16 O 1.21289 * 120.00115 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00054 * 179.97438 * 15 14 13 18 18 O 1.42905 * 109.67745 * 325.52150 * 17 15 14 19 19 C 1.53321 * 109.68379 * 205.00372 * 17 15 14 20 20 C 1.52734 * 108.38760 * 170.41110 * 19 17 15 21 21 C 1.50629 * 110.59151 * 51.09590 * 20 19 17 22 22 C 1.38912 * 117.75161 * 162.27509 * 21 20 19 23 23 C 1.37934 * 120.54187 * 179.76168 * 22 21 20 24 24 C 1.38270 * 119.77211 * 359.96225 * 23 22 21 25 25 C 1.37922 * 119.77141 * 0.11782 * 24 23 22 26 26 C 1.37657 * 122.56492 * 342.22688 * 21 20 19 27 27 C 1.50641 * 122.56331 * 0.72715 * 26 21 20 28 28 N 1.31230 * 108.05044 * 359.75474 * 13 12 11 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.07996 * 126.06622 * 359.96533 * 11 10 9 33 33 H 1.08006 * 126.06369 * 179.97438 * 12 11 10 34 34 H 0.97004 * 120.00086 * 180.02562 * 14 13 12 35 35 H 0.96697 * 114.00615 * 59.99913 * 18 17 15 36 36 H 1.09006 * 109.67369 * 290.13153 * 19 17 15 37 37 H 1.08994 * 109.68524 * 50.68159 * 19 17 15 38 38 H 1.09005 * 109.25243 * 171.38340 * 20 19 17 39 39 H 1.09001 * 109.24856 * 290.84715 * 20 19 17 40 40 H 1.07995 * 119.72945 * 359.78496 * 22 21 20 41 41 H 1.08001 * 120.11031 * 179.97438 * 23 22 21 42 42 H 1.07996 * 120.11160 * 180.13736 * 24 23 22 43 43 H 1.08000 * 119.72668 * 180.02562 * 25 24 23 44 44 H 1.09004 * 109.25314 * 221.92762 * 27 26 21 45 45 H 1.08994 * 109.24450 * 102.49793 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2419 -4.6264 0.8800 12 6 3.2601 -5.4454 0.5316 13 6 3.8685 -4.9124 -0.6160 14 7 4.9644 -5.4601 -1.2967 15 6 5.5285 -6.6024 -0.8569 16 8 5.0880 -7.1562 0.1282 17 6 6.7065 -7.1917 -1.5892 18 8 6.5727 -6.9478 -2.9909 19 6 6.7719 -8.7017 -1.3316 20 6 7.8175 -9.3051 -2.2672 21 6 9.1162 -8.5485 -2.1686 22 6 10.2636 -9.1679 -2.6476 23 6 11.4829 -8.5254 -2.5904 24 6 11.5646 -7.2542 -2.0527 25 6 10.4267 -6.6382 -1.5751 26 6 9.1984 -7.2848 -1.6290 27 6 7.9990 -6.5591 -1.0774 28 7 3.2287 -3.8141 -0.9425 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 1.5779 -4.7597 1.7212 33 1 3.5537 -6.3489 1.0456 34 1 5.3169 -5.0170 -2.0843 35 1 6.5334 -6.0105 -3.2252 36 1 7.0567 -8.8853 -0.2956 37 1 5.7987 -9.1505 -1.5304 38 1 7.9866 -10.3466 -1.9933 39 1 7.4517 -9.2581 -3.2929 40 1 10.2005 -10.1604 -3.0686 41 1 12.3706 -9.0137 -2.9645 42 1 12.5160 -6.7452 -2.0072 43 1 10.4912 -5.6451 -1.1556 44 1 8.0361 -5.5151 -1.3885 45 1 8.0176 -6.6101 0.0112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375066030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:04 Heat of formation + Delta-G solvation = 18.906684 kcal Electronic energy + Delta-G solvation = -28698.707201 eV Core-core repulsion = 24682.614712 eV Total energy + Delta-G solvation = -4016.092489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27943 -40.41587 -39.29813 -37.31736 -35.16947 -34.24007 -33.35031 -32.77376 -31.04974 -30.24276 -29.40187 -29.08215 -26.80513 -24.86538 -23.73855 -22.87571 -22.44670 -21.59592 -20.47268 -19.91695 -19.63307 -18.07993 -16.78527 -16.66805 -16.61296 -16.47261 -15.69349 -15.25268 -15.08958 -14.95131 -14.74184 -14.57198 -14.42154 -14.16545 -13.85525 -13.37482 -13.27971 -13.02623 -12.86409 -12.47338 -12.38123 -12.30477 -12.26860 -11.92748 -11.73057 -11.65562 -11.31293 -11.11603 -11.08143 -10.89226 -10.62296 -10.50049 -10.30075 -10.00999 -9.54035 -9.47297 -9.01484 -8.79588 -8.67483 -8.20910 -7.55142 -6.28156 -4.33298 1.09972 1.13224 2.11844 2.57728 2.84244 3.19523 3.27203 3.33142 3.48257 3.59197 3.71558 3.82734 4.13964 4.24250 4.29272 4.48917 4.64095 4.67210 4.68713 4.79323 4.97479 5.07152 5.14086 5.18937 5.27535 5.38404 5.43540 5.48379 5.56576 5.70788 5.74251 5.75125 5.84148 5.99740 6.16597 6.22149 6.25998 6.38497 6.41445 6.49195 6.75448 6.80106 7.00294 7.06972 7.31842 7.47597 7.66619 7.83772 7.98461 8.06262 8.55918 8.75875 9.32497 10.80667 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.002259 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.851134 B =12390.945604 C =13466.449455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.317 5.317 11 C 0.052 3.948 12 C -0.287 4.287 13 C 0.254 3.746 14 N -0.626 5.626 15 C 0.500 3.500 16 O -0.506 6.506 17 C 0.132 3.868 18 O -0.538 6.538 19 C -0.090 4.090 20 C -0.076 4.076 21 C -0.063 4.063 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.117 4.117 26 C -0.070 4.070 27 C -0.104 4.104 28 N -0.302 5.302 29 H 0.267 0.733 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.407 0.593 35 H 0.378 0.622 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.402 -17.672 -4.349 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.099 5.099 11 C -0.098 4.098 12 C -0.318 4.318 13 C 0.001 3.999 14 N -0.274 5.274 15 C 0.285 3.715 16 O -0.379 6.379 17 C 0.088 3.912 18 O -0.344 6.344 19 C -0.128 4.128 20 C -0.113 4.113 21 C -0.063 4.063 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.135 4.135 26 C -0.070 4.070 27 C -0.141 4.141 28 N -0.133 5.133 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.186 0.814 33 H 0.177 0.823 34 H 0.242 0.758 35 H 0.226 0.774 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.104 0.896 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 18.773 -17.541 -4.479 26.080 hybrid contribution 0.567 1.370 0.186 1.495 sum 19.340 -16.171 -4.294 25.573 Atomic orbital electron populations 1.69928 1.06045 1.27567 1.49722 1.24955 0.95000 0.99591 0.94586 0.86268 0.80018 0.82432 0.77755 1.19582 1.20664 1.20740 1.21280 0.93989 0.89332 1.52072 0.91278 1.19775 0.85616 0.81282 0.99347 1.49101 1.23245 1.19511 1.18009 1.22576 1.00263 0.90070 0.96874 1.21503 1.02124 1.06343 1.01860 1.19096 0.91510 0.94515 0.94750 1.42448 1.29886 1.24708 1.30344 1.21288 0.84858 0.79976 0.85419 1.90662 1.61867 1.59780 1.25567 1.21354 0.90736 0.97848 0.81298 1.86661 1.96068 1.30598 1.21049 1.21416 1.00623 0.89877 1.00861 1.20398 0.91326 0.98331 1.01217 1.19603 0.95272 0.93796 0.97660 1.21140 0.92254 1.00094 1.00502 1.21068 0.97604 0.95331 0.99927 1.21034 0.98291 0.95533 0.99433 1.21136 0.92139 1.00028 1.00227 1.19287 0.94069 0.94092 0.99512 1.21124 0.91199 0.99542 1.02252 1.77336 1.03667 1.16379 1.15955 0.92340 0.92460 0.93651 0.81394 0.82317 0.75779 0.77400 0.89167 0.89881 0.90354 0.89358 0.86148 0.86207 0.86149 0.86110 0.89573 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.06 13.29 55.43 0.74 -24.33 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.50 9.24 -34.44 -0.32 -14.82 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.26 6.45 6.26 -5.20 -0.03 6.41 16 10 N -0.32 -7.24 3.67 -62.57 -0.23 -7.47 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.56 9.60 -39.84 -0.38 -5.95 16 13 C 0.25 4.94 8.11 -154.38 -1.25 3.69 16 14 N -0.63 -9.12 5.36 -11.13 -0.06 -9.18 16 15 C 0.50 6.81 6.69 -10.99 -0.07 6.74 16 16 O -0.51 -8.36 13.41 5.55 0.07 -8.29 16 17 C 0.13 1.34 0.95 -91.74 -0.09 1.25 16 18 O -0.54 -5.01 11.75 -35.23 -0.41 -5.43 16 19 C -0.09 -0.87 4.51 -26.70 -0.12 -0.99 16 20 C -0.08 -0.63 5.28 -28.05 -0.15 -0.78 16 21 C -0.06 -0.58 5.68 -104.62 -0.59 -1.17 16 22 C -0.12 -1.00 9.61 -39.44 -0.38 -1.38 16 23 C -0.12 -0.94 10.05 -39.68 -0.40 -1.34 16 24 C -0.12 -0.99 10.05 -39.69 -0.40 -1.39 16 25 C -0.12 -1.01 9.61 -39.45 -0.38 -1.39 16 26 C -0.07 -0.65 5.62 -104.61 -0.59 -1.23 16 27 C -0.10 -0.94 4.64 -28.05 -0.13 -1.07 16 28 N -0.30 -6.79 12.43 31.44 0.39 -6.40 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.17 2.68 8.06 -52.49 -0.42 2.25 16 33 H 0.16 2.97 5.92 -52.48 -0.31 2.66 16 34 H 0.41 4.65 7.32 -40.82 -0.30 4.35 16 35 H 0.38 2.38 7.60 45.56 0.35 2.73 16 36 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 38 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 39 H 0.09 0.77 7.73 -51.93 -0.40 0.37 16 40 H 0.12 0.76 8.05 -52.49 -0.42 0.34 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.88 8.05 -52.49 -0.42 0.45 16 44 H 0.09 0.67 8.13 -51.93 -0.42 0.25 16 45 H 0.10 0.91 8.11 -51.93 -0.42 0.48 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -33.15 375.30 -9.71 -42.86 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.27 Total: 7.51 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -5.58 Total: -11.01 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.84 Total: -47.38 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.34 Total: -13.72 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.15 -9.71 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375066030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.768 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds