Wall clock time and date at job start Sat Apr 11 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34971 * 125.97907 * 124.99763 * 10 9 7 12 12 C 1.35235 * 107.86261 * 179.97438 * 11 10 9 13 13 C 1.40404 * 107.87251 * 0.02562 * 12 11 10 14 14 N 1.40155 * 125.97676 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99935 * 0.02562 * 14 13 12 16 16 O 1.21289 * 120.00115 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00054 * 179.97438 * 15 14 13 18 18 O 1.42905 * 109.67745 * 325.52150 * 17 15 14 19 19 C 1.53321 * 109.68379 * 205.00372 * 17 15 14 20 20 C 1.52734 * 108.38760 * 170.41110 * 19 17 15 21 21 C 1.50629 * 110.59151 * 51.09590 * 20 19 17 22 22 C 1.38912 * 117.75161 * 162.27509 * 21 20 19 23 23 C 1.37934 * 120.54187 * 179.76168 * 22 21 20 24 24 C 1.38270 * 119.77211 * 359.96225 * 23 22 21 25 25 C 1.37922 * 119.77141 * 0.11782 * 24 23 22 26 26 C 1.37657 * 122.56492 * 342.22688 * 21 20 19 27 27 C 1.50641 * 122.56331 * 0.72715 * 26 21 20 28 28 N 1.31230 * 108.05044 * 359.75474 * 13 12 11 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.07996 * 126.06622 * 359.96533 * 11 10 9 33 33 H 1.08006 * 126.06369 * 179.97438 * 12 11 10 34 34 H 0.97004 * 120.00086 * 180.02562 * 14 13 12 35 35 H 0.96697 * 114.00615 * 59.99913 * 18 17 15 36 36 H 1.09006 * 109.67369 * 290.13153 * 19 17 15 37 37 H 1.08994 * 109.68524 * 50.68159 * 19 17 15 38 38 H 1.09005 * 109.25243 * 171.38340 * 20 19 17 39 39 H 1.09001 * 109.24856 * 290.84715 * 20 19 17 40 40 H 1.07995 * 119.72945 * 359.78496 * 22 21 20 41 41 H 1.08001 * 120.11031 * 179.97438 * 23 22 21 42 42 H 1.07996 * 120.11160 * 180.13736 * 24 23 22 43 43 H 1.08000 * 119.72668 * 180.02562 * 25 24 23 44 44 H 1.09004 * 109.25314 * 221.92762 * 27 26 21 45 45 H 1.08994 * 109.24450 * 102.49793 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.2419 -4.6264 0.8800 12 6 3.2601 -5.4454 0.5316 13 6 3.8685 -4.9124 -0.6160 14 7 4.9644 -5.4601 -1.2967 15 6 5.5285 -6.6024 -0.8569 16 8 5.0880 -7.1562 0.1282 17 6 6.7065 -7.1917 -1.5892 18 8 6.5727 -6.9478 -2.9909 19 6 6.7719 -8.7017 -1.3316 20 6 7.8175 -9.3051 -2.2672 21 6 9.1162 -8.5485 -2.1686 22 6 10.2636 -9.1679 -2.6476 23 6 11.4829 -8.5254 -2.5904 24 6 11.5646 -7.2542 -2.0527 25 6 10.4267 -6.6382 -1.5751 26 6 9.1984 -7.2848 -1.6290 27 6 7.9990 -6.5591 -1.0774 28 7 3.2287 -3.8141 -0.9425 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 1.5779 -4.7597 1.7212 33 1 3.5537 -6.3489 1.0456 34 1 5.3169 -5.0170 -2.0843 35 1 6.5334 -6.0105 -3.2252 36 1 7.0567 -8.8853 -0.2956 37 1 5.7987 -9.1505 -1.5304 38 1 7.9866 -10.3466 -1.9933 39 1 7.4517 -9.2581 -3.2929 40 1 10.2005 -10.1604 -3.0686 41 1 12.3706 -9.0137 -2.9645 42 1 12.5160 -6.7452 -2.0072 43 1 10.4912 -5.6451 -1.1556 44 1 8.0361 -5.5151 -1.3885 45 1 8.0176 -6.6101 0.0112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375066030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:03 Heat of formation + Delta-G solvation = -1.613121 kcal Electronic energy + Delta-G solvation = -28699.597007 eV Core-core repulsion = 24682.614712 eV Total energy + Delta-G solvation = -4016.982295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.45062 -41.63883 -40.25746 -38.18734 -36.45107 -35.42599 -34.92324 -33.43386 -32.78891 -31.00212 -30.96735 -29.81853 -28.60981 -25.92459 -24.90931 -24.19961 -23.06359 -22.76674 -21.95339 -21.04653 -20.59071 -19.17567 -18.70551 -18.13064 -17.48061 -17.25810 -17.06956 -16.42752 -16.34718 -15.94534 -15.84037 -15.47459 -15.42329 -15.31178 -15.09484 -14.56981 -14.27369 -14.01418 -13.93851 -13.85946 -13.79730 -13.59240 -13.13228 -13.01273 -12.91863 -12.76522 -12.59886 -12.32898 -12.29839 -12.11385 -11.99207 -11.78510 -11.61553 -11.41490 -11.33107 -10.73818 -10.60412 -9.80399 -9.62133 -9.42089 -9.17801 -8.34485 -6.48366 0.48539 0.52442 0.82894 1.24463 1.34993 1.36866 1.39421 1.51667 2.13927 2.21571 2.36851 2.87614 2.97615 3.04062 3.21234 3.47430 3.64715 3.90788 3.99010 4.03095 4.05744 4.22569 4.24205 4.36656 4.48637 4.51390 4.59647 4.70387 4.76426 4.81013 4.86497 4.89418 4.91804 5.00328 5.01799 5.09176 5.16459 5.19181 5.33209 5.55421 5.62162 5.67664 5.76042 5.77791 5.86347 6.09519 6.16998 6.25169 6.50101 6.63295 6.86276 7.02722 7.21684 8.73535 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.002259 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.851134 B =12390.945604 C =13466.449455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.271 3.729 10 N -0.342 5.342 11 C 0.057 3.943 12 C -0.294 4.294 13 C 0.263 3.737 14 N -0.619 5.619 15 C 0.502 3.498 16 O -0.533 6.533 17 C 0.147 3.853 18 O -0.541 6.541 19 C -0.092 4.092 20 C -0.069 4.069 21 C -0.078 4.078 22 C -0.130 4.130 23 C -0.126 4.126 24 C -0.132 4.132 25 C -0.129 4.129 26 C -0.083 4.083 27 C -0.100 4.100 28 N -0.342 5.342 29 H 0.273 0.727 30 H 0.059 0.941 31 H 0.022 0.978 32 H 0.202 0.798 33 H 0.168 0.832 34 H 0.421 0.579 35 H 0.391 0.609 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.098 0.902 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.397 -18.094 -4.646 28.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.153 3.847 10 N -0.124 5.124 11 C -0.092 4.092 12 C -0.325 4.325 13 C 0.009 3.991 14 N -0.269 5.269 15 C 0.288 3.712 16 O -0.408 6.408 17 C 0.103 3.897 18 O -0.348 6.348 19 C -0.130 4.130 20 C -0.105 4.105 21 C -0.078 4.078 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.150 4.150 25 C -0.147 4.147 26 C -0.083 4.083 27 C -0.137 4.137 28 N -0.173 5.173 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.218 0.782 33 H 0.185 0.815 34 H 0.259 0.741 35 H 0.242 0.758 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.116 0.884 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.787 -17.974 -4.798 27.896 hybrid contribution 0.018 1.375 0.264 1.401 sum 20.805 -16.599 -4.534 26.999 Atomic orbital electron populations 1.70003 1.07225 1.28721 1.49975 1.25755 0.95857 1.02782 0.93914 0.85285 0.78431 0.78329 0.78277 1.19802 1.19877 1.19572 1.21412 0.93362 0.90882 1.52735 0.92904 1.19362 0.85688 0.81525 0.98157 1.48855 1.23937 1.20121 1.19517 1.23180 1.00445 0.88727 0.96826 1.21710 1.02192 1.06586 1.02036 1.19449 0.91727 0.93398 0.94571 1.42589 1.28671 1.25018 1.30646 1.22089 0.85048 0.79016 0.85009 1.90636 1.62792 1.60382 1.26949 1.21213 0.89345 0.97911 0.81276 1.86656 1.95910 1.32031 1.20230 1.21448 1.00803 0.89551 1.01229 1.20356 0.90577 0.99086 1.00529 1.19767 0.95862 0.93961 0.98206 1.21399 0.92132 1.00910 1.00299 1.21389 0.98280 0.95335 0.99401 1.21331 0.98862 0.95827 0.98963 1.21334 0.92223 1.00629 1.00511 1.19352 0.94232 0.94459 1.00275 1.21087 0.90524 1.00211 1.01876 1.77257 1.04743 1.18222 1.17106 0.91838 0.92308 0.96034 0.78161 0.81494 0.74058 0.75847 0.89389 0.90646 0.88693 0.89664 0.84485 0.84153 0.84402 0.85204 0.88371 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.81 13.29 21.45 0.28 -51.53 16 2 C 0.02 0.95 5.46 84.66 0.46 1.41 16 3 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.55 -30.48 9.24 25.60 0.24 -30.24 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 9 C 0.27 13.96 6.26 85.64 0.54 14.50 16 10 N -0.34 -15.89 3.67 -351.87 -1.29 -17.18 16 11 C 0.06 2.21 11.44 83.52 0.96 3.17 16 12 C -0.29 -11.29 9.60 22.10 0.21 -11.08 16 13 C 0.26 10.20 8.11 133.32 1.08 11.28 16 14 N -0.62 -17.67 5.36 -307.51 -1.65 -19.31 16 15 C 0.50 13.31 6.69 87.66 0.59 13.90 16 16 O -0.53 -17.38 13.41 -3.06 -0.04 -17.42 16 17 C 0.15 2.82 0.95 -11.52 -0.01 2.81 16 18 O -0.54 -9.29 11.75 -148.98 -1.75 -11.04 16 19 C -0.09 -1.71 4.51 30.61 0.14 -1.58 16 20 C -0.07 -1.04 5.28 29.74 0.16 -0.89 16 21 C -0.08 -1.30 5.68 -19.86 -0.11 -1.41 16 22 C -0.13 -1.85 9.61 22.36 0.21 -1.64 16 23 C -0.13 -1.67 10.05 22.21 0.22 -1.44 16 24 C -0.13 -1.83 10.05 22.20 0.22 -1.61 16 25 C -0.13 -2.03 9.61 22.36 0.21 -1.81 16 26 C -0.08 -1.43 5.62 -19.86 -0.11 -1.54 16 27 C -0.10 -1.69 4.64 29.74 0.14 -1.55 16 28 N -0.34 -15.60 12.43 -54.45 -0.68 -16.28 16 29 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 30 H 0.06 2.95 8.07 -2.38 -0.02 2.93 16 31 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.20 6.14 8.06 -2.91 -0.02 6.12 16 33 H 0.17 6.15 5.92 -2.91 -0.02 6.13 16 34 H 0.42 9.27 7.32 -92.71 -0.68 8.59 16 35 H 0.39 4.29 7.60 -74.06 -0.56 3.73 16 36 H 0.09 1.66 8.10 -2.38 -0.02 1.64 16 37 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 38 H 0.09 1.10 8.12 -2.38 -0.02 1.09 16 39 H 0.09 1.35 7.73 -2.39 -0.02 1.34 16 40 H 0.14 1.40 8.05 -2.91 -0.02 1.38 16 41 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.13 1.69 8.05 -2.91 -0.02 1.67 16 44 H 0.10 1.39 8.13 -2.39 -0.02 1.37 16 45 H 0.09 1.63 8.11 -2.39 -0.02 1.61 16 Total: -1.00 -71.04 375.30 1.85 -69.20 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.20 Total: 26.09 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 5.14 Total: -7.71 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -3.33 Total: -104.30 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -1.79 Total: -28.46 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -71.04 1.85 -69.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375066030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.585 kcal (2) G-P(sol) polarization free energy of solvation -71.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds