Wall clock time and date at job start Sat Apr 11 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86803 * 119.99420 * 2 1 4 4 H 1.48499 * 109.46919 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47187 * 299.99467 * 3 2 1 6 6 H 1.48503 * 109.47337 * 59.99695 * 3 2 1 7 7 C 1.37867 * 120.00409 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00557 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99930 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47085 * 180.02562 * 9 7 2 11 11 N 1.39910 * 125.80380 * 269.68809 * 10 9 7 12 12 C 1.30459 * 109.21827 * 179.80956 * 11 10 9 13 13 C 1.41087 * 108.30170 * 0.44717 * 12 11 10 14 14 C 1.47170 * 126.47866 * 179.69809 * 13 12 11 15 15 O 1.21640 * 119.99873 * 173.92106 * 14 13 12 16 16 N 1.34775 * 120.00657 * 353.92299 * 14 13 12 17 17 C 1.47420 * 125.65363 * 185.09837 * 16 14 13 18 18 C 1.54907 * 104.83283 * 204.08773 * 17 16 14 19 19 C 1.55148 * 101.58487 * 322.99189 * 18 17 16 20 20 H 1.08998 * 110.72403 * 277.14000 * 19 18 17 21 21 O 1.42905 * 110.72004 * 154.04075 * 19 18 17 22 22 C 1.47023 * 125.64289 * 4.78937 * 16 14 13 23 23 C 1.35169 * 125.81091 * 89.99744 * 10 9 7 24 24 C 1.47740 * 126.47311 * 0.03301 * 23 10 9 25 25 C 1.39613 * 120.14893 * 134.70109 * 24 23 10 26 26 C 1.37948 * 119.85002 * 179.72034 * 25 24 23 27 27 C 1.38364 * 120.14783 * 0.55966 * 26 25 24 28 28 C 1.38372 * 120.29926 * 359.71770 * 27 26 25 29 29 C 1.37951 * 120.14729 * 359.97438 * 28 27 26 30 30 H 0.96993 * 120.00440 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46782 * 299.99281 * 9 7 2 32 32 H 1.08991 * 109.47319 * 59.99396 * 9 7 2 33 33 H 1.08002 * 125.84995 * 180.20265 * 12 11 10 34 34 H 1.08999 * 110.36881 * 322.93054 * 17 16 14 35 35 H 1.09006 * 110.36348 * 85.25373 * 17 16 14 36 36 H 1.09000 * 111.00372 * 81.06828 * 18 17 16 37 37 H 1.09004 * 111.00491 * 204.87472 * 18 17 16 38 38 H 0.96706 * 113.99965 * 180.02562 * 21 19 18 39 39 H 1.09003 * 109.88516 * 298.39672 * 22 16 14 40 40 H 1.09001 * 109.88806 * 59.56347 * 22 16 14 41 41 H 1.08002 * 120.07222 * 359.97438 * 25 24 23 42 42 H 1.07998 * 119.93045 * 180.25099 * 26 25 24 43 43 H 1.08002 * 119.85259 * 179.69730 * 27 26 25 44 44 H 1.08000 * 119.92054 * 180.02562 * 28 27 26 45 45 H 1.07999 * 120.07178 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0047 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6126 0.0018 11 7 2.7314 -4.2392 -1.1322 12 6 3.5483 -5.1853 -0.7588 13 6 3.5748 -5.2168 0.6515 14 6 4.3596 -6.1356 1.4916 15 8 4.3801 -5.9883 2.6988 16 7 5.0556 -7.1401 0.9234 17 6 5.7936 -8.1911 1.6474 18 6 6.8714 -8.6792 0.6476 19 6 6.1014 -8.6128 -0.6977 20 1 5.4964 -9.5082 -0.8404 21 8 7.0060 -8.4366 -1.7899 22 6 5.1993 -7.3730 -0.5211 23 6 2.7165 -4.2132 1.0986 24 6 2.4227 -3.8712 2.5055 25 6 2.1571 -4.8814 3.4319 26 6 1.8893 -4.5555 4.7453 27 6 1.8721 -3.2304 5.1429 28 6 2.1288 -2.2239 4.2287 29 6 2.4043 -2.5362 2.9135 30 1 -0.4850 0.8399 -0.0004 31 1 0.6244 -2.5567 0.8904 32 1 0.6249 -2.5571 -0.8895 33 1 4.1056 -5.8359 -1.4165 34 1 6.2634 -7.7783 2.5401 35 1 5.1247 -9.0095 1.9136 36 1 7.7300 -8.0077 0.6399 37 1 7.1790 -9.7005 0.8724 38 1 6.5746 -8.3885 -2.6541 39 1 4.2214 -7.5573 -0.9660 40 1 5.6657 -6.5075 -0.9917 41 1 2.1654 -5.9160 3.1218 42 1 1.6877 -5.3362 5.4639 43 1 1.6571 -2.9804 6.1713 44 1 2.1143 -1.1916 4.5457 45 1 2.6041 -1.7497 2.2009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429817593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:24 Heat of formation + Delta-G solvation = 27.093362 kcal Electronic energy + Delta-G solvation = -29847.164823 eV Core-core repulsion = 25831.427335 eV Total energy + Delta-G solvation = -4015.737488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.97485 -39.63087 -38.28235 -37.71884 -35.56948 -33.99150 -32.27190 -31.63261 -30.89924 -30.28732 -28.76946 -28.35363 -27.27141 -24.39333 -23.46788 -22.48931 -22.10963 -21.38700 -20.90476 -19.86527 -18.78207 -17.79667 -17.09986 -16.81019 -16.58884 -16.02359 -15.49865 -15.18227 -14.84892 -14.52282 -14.44346 -14.25729 -14.02975 -13.68652 -13.49469 -13.28082 -12.97010 -12.80588 -12.63817 -12.54388 -12.32751 -12.14852 -12.00406 -11.84408 -11.68147 -11.17177 -10.99079 -10.93473 -10.89560 -10.56155 -10.45385 -10.40597 -10.24999 -9.96015 -9.44930 -9.10979 -8.75672 -8.60804 -8.34438 -8.22536 -7.75918 -6.38090 -4.46314 1.37487 1.98228 2.36393 2.75678 2.94395 3.13704 3.22278 3.24369 3.33940 3.78023 3.93007 4.19437 4.21693 4.29831 4.35626 4.73512 4.91785 4.95692 5.02311 5.09561 5.15533 5.33363 5.39272 5.43337 5.48366 5.54176 5.58167 5.59151 5.66655 5.75309 5.86677 5.95106 5.99389 6.18783 6.36915 6.40761 6.60339 6.69543 6.86441 6.90739 7.02763 7.08719 7.11269 7.27814 7.45996 7.51137 7.63310 7.70070 7.72095 8.28536 8.53392 8.59241 9.19945 10.69706 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.003785 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.231918 B = 7395.457619 C = 9085.631653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.250 3.750 10 N -0.305 5.305 11 N -0.290 5.290 12 C 0.045 3.955 13 C -0.314 4.314 14 C 0.616 3.384 15 O -0.540 6.540 16 N -0.619 5.619 17 C 0.111 3.889 18 C -0.126 4.126 19 C 0.091 3.909 20 H 0.075 0.925 21 O -0.557 6.557 22 C 0.065 3.935 23 C 0.201 3.799 24 C -0.044 4.044 25 C -0.047 4.047 26 C -0.139 4.139 27 C -0.110 4.110 28 C -0.133 4.133 29 C -0.080 4.080 30 H 0.270 0.730 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.185 0.815 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.382 0.618 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.715 -15.710 2.551 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.134 4.134 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.085 0.915 9 C 0.133 3.867 10 N -0.081 5.081 11 N -0.111 5.111 12 C -0.140 4.140 13 C -0.329 4.329 14 C 0.408 3.592 15 O -0.418 6.418 16 N -0.356 5.356 17 C -0.012 4.012 18 C -0.164 4.164 19 C 0.031 3.969 20 H 0.093 0.907 21 O -0.362 6.362 22 C -0.059 4.059 23 C 0.064 3.936 24 C -0.046 4.046 25 C -0.066 4.066 26 C -0.157 4.157 27 C -0.128 4.128 28 C -0.151 4.151 29 C -0.098 4.098 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.202 0.798 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.230 0.770 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.293 -14.701 2.629 16.619 hybrid contribution 0.316 0.552 -0.053 0.638 sum 7.608 -14.148 2.576 16.270 Atomic orbital electron populations 1.69924 1.06052 1.27848 1.48203 1.24906 0.94951 0.99404 0.94093 0.86337 0.80150 0.82470 0.78067 1.19394 1.20480 1.20412 1.21235 0.93737 0.89267 1.53718 0.91453 1.19943 0.86165 0.80266 1.00368 1.49653 1.32042 1.25014 1.01381 1.77128 1.14396 1.10264 1.09304 1.24259 0.98428 0.97701 0.93635 1.19733 1.12681 1.07242 0.93287 1.16922 0.77373 0.78255 0.86617 1.90786 1.64297 1.72452 1.14219 1.48017 1.52864 1.28340 1.06333 1.22140 0.92850 0.90164 0.96030 1.22811 0.98454 1.02808 0.92308 1.22858 0.90523 0.95783 0.87746 0.90715 1.86557 1.36016 1.96117 1.17511 1.23050 1.00247 0.99081 0.83502 1.19763 0.93668 0.91694 0.88474 1.17916 1.03680 0.93944 0.89063 1.20989 0.94866 0.98274 0.92457 1.20871 1.02954 0.96172 0.95690 1.21186 0.99431 0.93087 0.99109 1.21015 1.01558 0.99163 0.93329 1.21929 0.95060 0.96040 0.96774 0.92069 0.92400 0.92412 0.79825 0.89775 0.91435 0.89582 0.89397 0.77006 0.90548 0.90010 0.86300 0.86464 0.86627 0.86111 0.83149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.89 13.29 55.43 0.74 -23.16 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.90 20.33 29.54 -169.99 -5.02 15.30 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.12 7.22 -34.44 -0.25 -14.37 16 8 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.25 6.18 5.42 -5.19 -0.03 6.15 16 10 N -0.30 -6.94 3.59 -58.20 -0.21 -7.15 16 11 N -0.29 -6.20 12.48 30.82 0.38 -5.81 16 12 C 0.04 0.79 10.43 -17.06 -0.18 0.61 16 13 C -0.31 -5.97 6.08 -104.75 -0.64 -6.60 16 14 C 0.62 10.75 7.61 -12.64 -0.10 10.65 16 15 O -0.54 -10.62 13.54 5.24 0.07 -10.55 16 16 N -0.62 -8.19 3.33 -171.87 -0.57 -8.76 16 17 C 0.11 1.15 6.93 -2.53 -0.02 1.13 16 18 C -0.13 -1.04 6.81 -24.59 -0.17 -1.21 16 19 C 0.09 0.71 4.31 -24.89 -0.11 0.60 16 20 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 21 O -0.56 -4.46 13.40 -35.23 -0.47 -4.94 16 22 C 0.07 0.65 4.77 -3.06 -0.01 0.64 16 23 C 0.20 4.27 6.50 -82.07 -0.53 3.74 16 24 C -0.04 -0.90 5.02 -104.99 -0.53 -1.43 16 25 C -0.05 -0.85 7.57 -39.17 -0.30 -1.15 16 26 C -0.14 -2.22 10.03 -39.64 -0.40 -2.62 16 27 C -0.11 -1.71 10.04 -39.49 -0.40 -2.11 16 28 C -0.13 -2.32 10.03 -39.64 -0.40 -2.72 16 29 C -0.08 -1.62 8.63 -39.17 -0.34 -1.96 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.06 1.47 7.30 -51.93 -0.38 1.09 16 32 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.19 2.40 4.50 -52.49 -0.24 2.17 16 34 H 0.08 0.96 7.99 -51.93 -0.41 0.54 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.38 1.46 9.12 45.56 0.42 1.87 16 39 H 0.08 0.69 6.92 -51.93 -0.36 0.33 16 40 H 0.08 0.87 6.85 -51.93 -0.36 0.51 16 41 H 0.12 2.14 6.98 -52.49 -0.37 1.77 16 42 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 44 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 45 H 0.15 3.38 5.53 -52.49 -0.29 3.09 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -31.99 369.57 -8.91 -40.90 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.91 Total: 7.47 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -4.48 Total: -8.87 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.34 Total: -44.89 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.40 Total: -15.49 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.99 -8.91 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429817593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.992 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds