Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86803 * 119.99533 * 2 1 4 4 H 1.48498 * 109.46606 * 239.99587 * 3 2 1 5 5 H 1.48497 * 109.47451 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46720 * 119.99958 * 3 2 1 7 7 C 1.37875 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99413 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00238 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47171 * 180.02562 * 9 7 2 11 11 C 1.46508 * 119.99778 * 269.72651 * 10 9 7 12 12 C 1.53000 * 109.47426 * 96.96556 * 11 10 9 13 13 C 1.52996 * 117.49922 * 243.62305 * 12 11 10 14 14 C 1.53001 * 117.49771 * 174.99793 * 12 11 10 15 15 C 1.34772 * 120.00414 * 89.99562 * 10 9 7 16 16 O 1.21365 * 120.00041 * 356.30397 * 15 10 9 17 17 C 1.49321 * 120.00435 * 176.30412 * 15 10 9 18 18 O 1.21392 * 120.00053 * 5.67173 * 17 15 10 19 19 N 1.34774 * 120.00607 * 185.67864 * 17 15 10 20 20 C 1.39764 * 120.00699 * 175.38062 * 19 17 15 21 21 C 1.38482 * 120.17973 * 34.58926 * 20 19 17 22 22 C 1.38689 * 120.57311 * 179.97438 * 21 20 19 23 23 C 1.36678 * 120.60450 * 0.02562 * 22 21 20 24 24 C 1.39736 * 119.91222 * 359.97438 * 23 22 21 25 25 C 1.46485 * 133.98695 * 180.02562 * 24 23 22 26 26 C 1.34256 * 107.00430 * 180.02562 * 25 24 23 27 27 N 1.36770 * 109.90645 * 0.02562 * 26 25 24 28 28 H 0.97005 * 125.06832 * 180.02562 * 27 26 25 29 29 C 1.37737 * 109.86168 * 359.76239 * 27 26 25 30 30 H 0.96994 * 119.99971 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47456 * 59.99789 * 9 7 2 32 32 H 1.09005 * 109.47071 * 299.99397 * 9 7 2 33 33 H 1.09004 * 109.46648 * 216.97054 * 11 10 9 34 34 H 1.09006 * 109.46710 * 336.96639 * 11 10 9 35 35 H 1.08995 * 115.54572 * 29.33055 * 12 11 10 36 36 H 1.09001 * 117.49893 * 0.02562 * 13 12 11 37 37 H 1.09000 * 117.49761 * 145.01927 * 13 12 11 38 38 H 1.08999 * 117.49683 * 214.98199 * 14 12 11 39 39 H 1.09000 * 117.49842 * 0.02562 * 14 12 11 40 40 H 0.97000 * 119.99769 * 355.37207 * 19 17 15 41 41 H 1.08003 * 119.71290 * 0.02562 * 21 20 19 42 42 H 1.08004 * 119.69869 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.04482 * 179.97438 * 23 22 21 44 44 H 1.07997 * 126.49987 * 0.02562 * 25 24 23 45 45 H 1.07997 * 125.04677 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 2.6755 -4.1739 -1.2664 12 6 4.0270 -3.5537 -1.6268 13 6 4.1000 -2.7107 -2.9014 14 6 4.7464 -4.0969 -2.8630 15 6 2.6403 -4.1243 1.1694 16 8 2.2980 -3.6200 2.2190 17 6 3.5457 -5.3117 1.1720 18 8 3.9709 -5.7530 0.1242 19 7 3.8910 -5.8935 2.3377 20 6 4.6590 -7.0612 2.3355 21 6 5.6304 -7.2537 1.3675 22 6 6.3975 -8.4091 1.3580 23 6 6.2080 -9.3780 2.3033 24 6 5.2341 -9.2072 3.2906 25 6 4.7794 -10.0187 4.4222 26 6 3.7981 -9.3319 5.0287 27 7 3.5873 -8.1478 4.3775 28 1 2.9288 -7.4820 4.6307 29 6 4.4535 -8.0389 3.3122 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5571 -0.8896 32 1 0.6242 -2.5567 0.8904 33 1 2.7862 -5.2537 -1.1670 34 1 1.9534 -3.9535 -2.0526 35 1 4.6421 -3.2438 -0.7821 36 1 3.1851 -2.5975 -3.4831 37 1 4.7633 -1.8457 -2.8954 38 1 5.8349 -4.1440 -2.8317 39 1 4.2567 -4.8958 -3.4198 40 1 3.6065 -5.5017 3.1782 41 1 5.7925 -6.4973 0.6139 42 1 7.1516 -8.5445 0.5967 43 1 6.8103 -10.2743 2.2871 44 1 5.1611 -10.9861 4.7135 45 1 3.2557 -9.6650 5.9012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527375375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = 38.267970 kcal Electronic energy + Delta-G solvation = -29471.004676 eV Core-core repulsion = 25455.751755 eV Total energy + Delta-G solvation = -4015.252921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.57331 -40.43765 -38.38264 -37.12192 -36.78747 -35.16690 -34.26035 -32.53145 -31.11113 -29.33464 -28.73603 -28.04682 -26.43876 -24.73101 -23.06860 -22.22837 -21.89805 -21.66029 -20.67462 -20.38073 -19.56577 -18.40572 -17.24556 -17.06457 -16.53857 -15.98928 -15.72231 -15.63297 -15.23676 -14.83165 -14.65063 -14.45081 -14.34767 -14.13927 -13.78112 -13.31105 -13.21240 -13.10481 -12.71870 -12.32807 -12.24289 -11.92653 -11.73328 -11.56617 -11.40118 -11.25025 -11.10314 -10.94935 -10.82993 -10.66206 -10.57018 -10.24085 -9.89638 -9.67812 -9.47022 -9.24490 -8.73849 -8.47006 -8.33181 -7.88251 -7.54447 -6.09176 -4.12946 0.93227 1.52376 1.86236 2.54848 2.67980 2.94742 3.30228 3.34096 3.37264 3.60552 3.86373 3.93758 4.34667 4.41432 4.59358 4.67794 4.77245 4.95361 5.10544 5.23033 5.25832 5.36163 5.40232 5.42161 5.52127 5.52781 5.76305 5.84954 5.86344 6.00370 6.11044 6.18615 6.23793 6.33834 6.36231 6.53279 6.55445 6.59609 6.63554 6.70837 6.84289 7.05397 7.15109 7.24092 7.30349 7.35333 7.82604 7.91765 8.13569 8.16575 8.58073 8.90759 9.51274 10.99369 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.003052 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.407696 B = 9170.674103 C =10383.651020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.244 3.756 10 N -0.554 5.554 11 C 0.129 3.871 12 C -0.134 4.134 13 C -0.174 4.174 14 C -0.179 4.179 15 C 0.496 3.504 16 O -0.525 6.525 17 C 0.505 3.495 18 O -0.490 6.490 19 N -0.654 5.654 20 C 0.138 3.862 21 C -0.103 4.103 22 C -0.125 4.125 23 C -0.090 4.090 24 C -0.094 4.094 25 C -0.208 4.208 26 C 0.052 3.948 27 N -0.593 5.593 28 H 0.416 0.584 29 C 0.076 3.924 30 H 0.264 0.736 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.416 0.584 41 H 0.146 0.854 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.146 0.854 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.494 -18.848 4.366 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.078 0.922 9 C 0.126 3.874 10 N -0.284 5.284 11 C 0.006 3.994 12 C -0.153 4.153 13 C -0.211 4.211 14 C -0.216 4.216 15 C 0.276 3.724 16 O -0.402 6.402 17 C 0.288 3.712 18 O -0.363 6.363 19 N -0.300 5.300 20 C 0.041 3.959 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.109 4.109 24 C -0.099 4.099 25 C -0.233 4.233 26 C -0.074 4.074 27 N -0.196 5.196 28 H 0.253 0.747 29 C -0.032 4.032 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.253 0.747 41 H 0.163 0.837 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.164 0.836 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.253 -18.614 4.169 21.201 hybrid contribution -0.005 1.588 0.571 1.688 sum 9.249 -17.026 4.740 19.947 Atomic orbital electron populations 1.69916 1.05967 1.27197 1.50439 1.24905 0.94860 0.99157 0.95058 0.86558 0.79529 0.82677 0.78698 1.20142 1.21206 1.20219 1.21295 0.93401 0.90111 1.51034 0.92200 1.19517 0.87039 0.82055 0.98793 1.48196 1.42842 1.33312 1.04072 1.21613 0.93237 0.99080 0.85457 1.22403 0.98103 1.02808 0.92014 1.22958 1.02656 0.93839 1.01612 1.22854 0.99105 0.97330 1.02361 1.19548 0.82938 0.84340 0.85574 1.90742 1.57448 1.61179 1.30851 1.20957 0.81846 0.84884 0.83486 1.90673 1.52240 1.63191 1.30209 1.43161 1.51798 1.24972 1.10112 1.16783 0.95385 0.86193 0.97491 1.21085 0.93270 0.99335 0.98794 1.20554 1.00532 0.93906 0.99438 1.20265 0.97271 0.99384 0.93988 1.19043 0.98696 0.94047 0.98121 1.21656 1.01901 1.01391 0.98345 1.21818 1.00153 0.86495 0.98957 1.41759 1.33338 1.19120 1.25416 0.74731 1.18033 0.95987 0.96474 0.92716 0.92626 0.94293 0.93661 0.87923 0.90864 0.88697 0.88846 0.89472 0.89597 0.89225 0.74741 0.83665 0.85640 0.86055 0.83591 0.81262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.27 9.39 -34.44 -0.32 -14.59 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.24 6.17 5.17 -5.20 -0.03 6.15 16 10 N -0.55 -11.71 2.47 -175.61 -0.43 -12.15 16 11 C 0.13 2.31 5.31 -4.04 -0.02 2.29 16 12 C -0.13 -2.31 4.97 -90.62 -0.45 -2.76 16 13 C -0.17 -2.79 10.18 -26.73 -0.27 -3.06 16 14 C -0.18 -2.54 10.25 -26.73 -0.27 -2.82 16 15 C 0.50 10.12 7.67 -11.65 -0.09 10.03 16 16 O -0.52 -12.06 16.10 5.48 0.09 -11.97 16 17 C 0.50 8.52 7.61 -11.65 -0.09 8.43 16 18 O -0.49 -8.27 9.78 5.46 0.05 -8.22 16 19 N -0.65 -9.33 5.33 -10.21 -0.05 -9.39 16 20 C 0.14 1.87 6.32 -83.60 -0.53 1.35 16 21 C -0.10 -1.38 8.69 -39.33 -0.34 -1.72 16 22 C -0.12 -1.40 9.97 -39.98 -0.40 -1.80 16 23 C -0.09 -0.97 10.05 -39.59 -0.40 -1.36 16 24 C -0.09 -1.10 6.37 -105.15 -0.67 -1.77 16 25 C -0.21 -1.93 11.08 -37.67 -0.42 -2.35 16 26 C 0.05 0.42 11.82 -16.75 -0.20 0.23 16 27 N -0.59 -5.71 6.07 -10.54 -0.06 -5.78 16 28 H 0.42 3.23 8.96 -40.82 -0.37 2.86 16 29 C 0.08 0.94 7.20 -83.80 -0.60 0.34 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.04 1.00 7.85 -51.93 -0.41 0.59 16 32 H 0.05 1.27 7.47 -51.93 -0.39 0.88 16 33 H 0.10 1.74 5.41 -51.93 -0.28 1.46 16 34 H 0.07 1.27 7.55 -51.93 -0.39 0.88 16 35 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 36 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.42 5.44 8.30 -40.82 -0.34 5.10 16 41 H 0.15 2.08 6.16 -52.48 -0.32 1.76 16 42 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -32.19 382.08 -9.98 -42.17 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.84 Total: 10.03 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -5.20 Total: -1.80 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.18 Total: -52.56 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.14 Total: -20.19 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.19 -9.98 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527375375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.435 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds