Wall clock time and date at job start Sat Apr 11 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86803 * 119.99533 * 2 1 4 4 H 1.48498 * 109.46606 * 239.99587 * 3 2 1 5 5 H 1.48497 * 109.47451 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46720 * 119.99958 * 3 2 1 7 7 C 1.37875 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99413 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00238 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47171 * 180.02562 * 9 7 2 11 11 C 1.46508 * 119.99778 * 269.72651 * 10 9 7 12 12 C 1.53000 * 109.47426 * 96.96556 * 11 10 9 13 13 C 1.52996 * 117.49922 * 243.62305 * 12 11 10 14 14 C 1.53001 * 117.49771 * 174.99793 * 12 11 10 15 15 C 1.34772 * 120.00414 * 89.99562 * 10 9 7 16 16 O 1.21365 * 120.00041 * 356.30397 * 15 10 9 17 17 C 1.49321 * 120.00435 * 176.30412 * 15 10 9 18 18 O 1.21392 * 120.00053 * 5.67173 * 17 15 10 19 19 N 1.34774 * 120.00607 * 185.67864 * 17 15 10 20 20 C 1.39764 * 120.00699 * 175.38062 * 19 17 15 21 21 C 1.38482 * 120.17973 * 34.58926 * 20 19 17 22 22 C 1.38689 * 120.57311 * 179.97438 * 21 20 19 23 23 C 1.36678 * 120.60450 * 0.02562 * 22 21 20 24 24 C 1.39736 * 119.91222 * 359.97438 * 23 22 21 25 25 C 1.46485 * 133.98695 * 180.02562 * 24 23 22 26 26 C 1.34256 * 107.00430 * 180.02562 * 25 24 23 27 27 N 1.36770 * 109.90645 * 0.02562 * 26 25 24 28 28 H 0.97005 * 125.06832 * 180.02562 * 27 26 25 29 29 C 1.37737 * 109.86168 * 359.76239 * 27 26 25 30 30 H 0.96994 * 119.99971 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47456 * 59.99789 * 9 7 2 32 32 H 1.09005 * 109.47071 * 299.99397 * 9 7 2 33 33 H 1.09004 * 109.46648 * 216.97054 * 11 10 9 34 34 H 1.09006 * 109.46710 * 336.96639 * 11 10 9 35 35 H 1.08995 * 115.54572 * 29.33055 * 12 11 10 36 36 H 1.09001 * 117.49893 * 0.02562 * 13 12 11 37 37 H 1.09000 * 117.49761 * 145.01927 * 13 12 11 38 38 H 1.08999 * 117.49683 * 214.98199 * 14 12 11 39 39 H 1.09000 * 117.49842 * 0.02562 * 14 12 11 40 40 H 0.97000 * 119.99769 * 355.37207 * 19 17 15 41 41 H 1.08003 * 119.71290 * 0.02562 * 21 20 19 42 42 H 1.08004 * 119.69869 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.04482 * 179.97438 * 23 22 21 44 44 H 1.07997 * 126.49987 * 0.02562 * 25 24 23 45 45 H 1.07997 * 125.04677 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 2.6755 -4.1739 -1.2664 12 6 4.0270 -3.5537 -1.6268 13 6 4.1000 -2.7107 -2.9014 14 6 4.7464 -4.0969 -2.8630 15 6 2.6403 -4.1243 1.1694 16 8 2.2980 -3.6200 2.2190 17 6 3.5457 -5.3117 1.1720 18 8 3.9709 -5.7530 0.1242 19 7 3.8910 -5.8935 2.3377 20 6 4.6590 -7.0612 2.3355 21 6 5.6304 -7.2537 1.3675 22 6 6.3975 -8.4091 1.3580 23 6 6.2080 -9.3780 2.3033 24 6 5.2341 -9.2072 3.2906 25 6 4.7794 -10.0187 4.4222 26 6 3.7981 -9.3319 5.0287 27 7 3.5873 -8.1478 4.3775 28 1 2.9288 -7.4820 4.6307 29 6 4.4535 -8.0389 3.3122 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5571 -0.8896 32 1 0.6242 -2.5567 0.8904 33 1 2.7862 -5.2537 -1.1670 34 1 1.9534 -3.9535 -2.0526 35 1 4.6421 -3.2438 -0.7821 36 1 3.1851 -2.5975 -3.4831 37 1 4.7633 -1.8457 -2.8954 38 1 5.8349 -4.1440 -2.8317 39 1 4.2567 -4.8958 -3.4198 40 1 3.6065 -5.5017 3.1782 41 1 5.7925 -6.4973 0.6139 42 1 7.1516 -8.5445 0.5967 43 1 6.8103 -10.2743 2.2871 44 1 5.1611 -10.9861 4.7135 45 1 3.2557 -9.6650 5.9012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527375375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:58 Heat of formation + Delta-G solvation = 19.288690 kcal Electronic energy + Delta-G solvation = -29471.827680 eV Core-core repulsion = 25455.751755 eV Total energy + Delta-G solvation = -4016.075924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.53315 -41.71759 -39.81626 -38.55753 -37.77162 -36.49989 -35.75827 -34.55931 -31.98263 -30.26516 -30.07233 -29.45621 -27.93929 -26.40016 -24.53503 -23.15297 -23.11408 -22.85470 -21.93409 -21.39519 -20.82323 -19.53462 -18.76669 -18.48023 -18.14559 -17.37390 -17.10989 -16.82684 -16.60421 -16.23551 -15.91774 -15.65693 -15.51325 -15.22169 -14.91215 -14.86208 -14.68879 -14.21181 -13.87559 -13.81485 -13.52413 -13.39677 -13.07981 -12.84614 -12.71067 -12.58741 -12.55830 -12.52761 -12.27780 -12.25887 -12.13316 -11.71655 -11.60274 -11.21492 -10.83160 -10.63125 -10.25914 -10.12290 -9.63766 -9.17812 -8.42236 -8.23473 -6.35411 -0.07659 0.49297 0.67877 1.27622 1.36894 1.39232 1.47109 1.83169 2.11817 2.20162 2.36648 2.51645 2.94426 3.06733 3.07666 3.24193 3.84559 3.91087 4.09383 4.09888 4.11378 4.22218 4.28503 4.44052 4.51287 4.55363 4.66700 4.74325 4.82699 4.85902 4.93454 4.97994 5.06458 5.09973 5.12728 5.27016 5.34110 5.34701 5.39550 5.48438 5.66747 5.71801 5.81107 5.82694 5.94811 6.01655 6.19129 6.37064 6.61881 6.65926 6.72202 6.96628 7.33466 8.84267 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.003052 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.407696 B = 9170.674103 C =10383.651020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.260 3.740 10 N -0.560 5.560 11 C 0.133 3.867 12 C -0.157 4.157 13 C -0.182 4.182 14 C -0.144 4.144 15 C 0.490 3.510 16 O -0.559 6.559 17 C 0.514 3.486 18 O -0.490 6.490 19 N -0.639 5.639 20 C 0.113 3.887 21 C -0.117 4.117 22 C -0.131 4.131 23 C -0.085 4.085 24 C -0.112 4.112 25 C -0.221 4.221 26 C 0.062 3.938 27 N -0.594 5.594 28 H 0.422 0.578 29 C 0.059 3.941 30 H 0.267 0.733 31 H 0.031 0.969 32 H 0.011 0.989 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.420 0.580 41 H 0.131 0.869 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.170 0.830 45 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.138 -20.771 4.525 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.186 4.186 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.568 4.568 8 H 0.070 0.930 9 C 0.139 3.861 10 N -0.290 5.290 11 C 0.011 3.989 12 C -0.176 4.176 13 C -0.219 4.219 14 C -0.182 4.182 15 C 0.272 3.728 16 O -0.438 6.438 17 C 0.296 3.704 18 O -0.364 6.364 19 N -0.285 5.285 20 C 0.018 3.982 21 C -0.138 4.138 22 C -0.151 4.151 23 C -0.104 4.104 24 C -0.117 4.117 25 C -0.245 4.245 26 C -0.064 4.064 27 N -0.197 5.197 28 H 0.260 0.740 29 C -0.050 4.050 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.257 0.743 41 H 0.149 0.851 42 H 0.165 0.835 43 H 0.167 0.833 44 H 0.188 0.812 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 10.922 -20.579 4.328 23.696 hybrid contribution -0.505 2.059 0.615 2.207 sum 10.417 -18.520 4.943 21.816 Atomic orbital electron populations 1.70022 1.07319 1.28180 1.51111 1.25722 0.95704 1.02566 0.94591 0.85574 0.78419 0.78622 0.78885 1.18861 1.20323 1.20355 1.21486 0.93102 0.91298 1.50957 0.92971 1.19026 0.87324 0.83090 0.96626 1.48140 1.42467 1.32579 1.05784 1.21754 0.93651 0.99538 0.83963 1.22274 0.97957 1.05043 0.92348 1.23004 1.03070 0.95050 1.00760 1.22933 0.99893 0.96324 0.99033 1.20180 0.82825 0.85054 0.84734 1.90705 1.58746 1.62484 1.31907 1.20085 0.81761 0.84089 0.84444 1.90657 1.52355 1.63016 1.30363 1.42962 1.51217 1.25084 1.09235 1.16924 0.96164 0.86186 0.98907 1.21113 0.94082 0.99992 0.98627 1.20790 1.00725 0.93234 1.00306 1.20630 0.96788 0.99929 0.93012 1.19526 0.98808 0.94281 0.99111 1.22024 1.02360 1.02398 0.97719 1.22520 0.99497 0.85189 0.99211 1.41922 1.33009 1.19936 1.24852 0.73972 1.18135 0.97065 0.96530 0.93288 0.92379 0.95060 0.97122 0.86743 0.90633 0.90935 0.88917 0.89626 0.88002 0.87388 0.74307 0.85107 0.83477 0.83315 0.81237 0.77391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.89 13.29 21.45 0.28 -54.61 16 2 C 0.01 0.76 5.46 84.65 0.46 1.22 16 3 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.53 -30.00 9.39 25.60 0.24 -29.76 16 8 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 9 C 0.26 13.75 5.17 85.63 0.44 14.20 16 10 N -0.56 -24.67 2.47 -827.86 -2.05 -26.72 16 11 C 0.13 4.81 5.31 86.38 0.46 5.27 16 12 C -0.16 -5.42 4.97 -10.79 -0.05 -5.47 16 13 C -0.18 -5.73 10.18 30.59 0.31 -5.42 16 14 C -0.14 -3.83 10.25 30.60 0.31 -3.52 16 15 C 0.49 20.89 7.67 87.23 0.67 21.56 16 16 O -0.56 -26.99 16.10 -3.29 -0.05 -27.05 16 17 C 0.51 17.82 7.61 87.23 0.66 18.48 16 18 O -0.49 -16.67 9.78 -3.38 -0.03 -16.70 16 19 N -0.64 -18.65 5.33 -304.56 -1.62 -20.27 16 20 C 0.11 3.08 6.32 38.29 0.24 3.32 16 21 C -0.12 -3.09 8.69 22.44 0.19 -2.90 16 22 C -0.13 -2.76 9.97 22.01 0.22 -2.54 16 23 C -0.08 -1.64 10.05 22.27 0.22 -1.41 16 24 C -0.11 -2.39 6.37 -20.21 -0.13 -2.52 16 25 C -0.22 -3.46 11.08 23.51 0.26 -3.20 16 26 C 0.06 0.82 11.82 83.01 0.98 1.80 16 27 N -0.59 -10.51 6.07 -187.27 -1.14 -11.65 16 28 H 0.42 6.11 8.96 -92.70 -0.83 5.28 16 29 C 0.06 1.39 7.20 39.13 0.28 1.68 16 30 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.03 1.69 7.85 -2.39 -0.02 1.67 16 32 H 0.01 0.64 7.47 -2.38 -0.02 0.62 16 33 H 0.12 3.87 5.41 -2.39 -0.01 3.86 16 34 H 0.08 2.66 7.55 -2.38 -0.02 2.64 16 35 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.09 2.91 8.03 -2.39 -0.02 2.90 16 37 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.42 11.37 8.30 -92.71 -0.77 10.60 16 41 H 0.13 3.78 6.16 -2.91 -0.02 3.76 16 42 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 45 H 0.21 0.97 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -71.42 382.08 2.65 -68.76 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.55 Total: 30.69 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 5.78 Total: 10.79 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -4.52 Total: -113.24 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.09 Total: -43.75 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -71.42 2.65 -68.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527375375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.054 kcal (2) G-P(sol) polarization free energy of solvation -71.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds