Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00505 * 2 1 4 4 H 1.48496 * 109.47498 * 275.00259 * 3 2 1 5 5 H 1.48507 * 109.46779 * 34.99816 * 3 2 1 6 6 H 1.48501 * 109.47261 * 154.99799 * 3 2 1 7 7 C 1.37875 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00211 * 187.52929 * 7 2 1 9 9 C 1.50700 * 119.99979 * 7.51936 * 7 2 1 10 10 C 1.53045 * 109.46188 * 180.39553 * 9 7 2 11 11 C 1.53189 * 109.31429 * 178.62925 * 10 9 7 12 12 N 1.46925 * 108.89066 * 54.56532 * 11 10 9 13 13 C 1.34784 * 120.63059 * 126.45952 * 12 11 10 14 14 O 1.21371 * 119.99511 * 351.65534 * 13 12 11 15 15 C 1.49318 * 120.00195 * 171.65183 * 13 12 11 16 16 O 1.21386 * 120.00184 * 353.37120 * 15 13 12 17 17 N 1.34785 * 119.99816 * 173.36873 * 15 13 12 18 18 C 1.39765 * 119.99750 * 181.18702 * 17 15 13 19 19 C 1.38482 * 120.18407 * 331.51334 * 18 17 15 20 20 C 1.38693 * 120.57737 * 179.76070 * 19 18 17 21 21 C 1.36672 * 120.59843 * 0.49331 * 20 19 18 22 22 C 1.39738 * 119.91648 * 359.76950 * 21 20 19 23 23 C 1.46488 * 133.98445 * 179.97438 * 22 21 20 24 24 C 1.34262 * 107.00266 * 180.02562 * 23 22 21 25 25 N 1.36771 * 109.90717 * 359.97438 * 24 23 22 26 26 H 0.97006 * 125.07071 * 179.97438 * 25 24 23 27 27 C 1.37734 * 109.86114 * 0.02562 * 25 24 23 28 28 C 1.46960 * 118.72080 * 306.64160 * 12 11 10 29 29 C 1.53043 * 109.44750 * 60.33903 * 9 7 2 30 30 H 0.97004 * 119.99283 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46616 * 300.37312 * 9 7 2 32 32 H 1.08999 * 109.49199 * 58.68144 * 10 9 7 33 33 H 1.08995 * 109.52808 * 298.60432 * 10 9 7 34 34 H 1.08995 * 109.59141 * 174.42357 * 11 10 9 35 35 H 1.08997 * 109.59183 * 294.71382 * 11 10 9 36 36 H 0.96995 * 120.00387 * 1.18447 * 17 15 13 37 37 H 1.08008 * 119.70904 * 359.97244 * 19 18 17 38 38 H 1.07994 * 119.69769 * 180.23777 * 20 19 18 39 39 H 1.08001 * 120.04704 * 179.78164 * 21 20 19 40 40 H 1.07995 * 126.50235 * 0.02562 * 23 22 21 41 41 H 1.07995 * 125.04424 * 179.97438 * 24 23 22 42 42 H 1.08995 * 109.47061 * 293.57408 * 28 12 11 43 43 H 1.09001 * 109.71133 * 173.28243 * 28 12 11 44 44 H 1.08995 * 109.50185 * 301.33470 * 29 9 7 45 45 H 1.09006 * 109.49746 * 61.42745 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3911 2.1074 -1.3947 5 1 1.5035 2.6198 0.8031 6 1 3.5956 1.4118 0.5917 7 6 2.0044 -1.1941 -0.0005 8 1 3.0774 -1.1982 0.1220 9 6 1.2606 -2.4934 -0.1719 10 6 2.2521 -3.6584 -0.1259 11 6 1.4887 -4.9792 -0.2661 12 7 0.6724 -4.9296 -1.4867 13 6 0.7681 -5.9004 -2.4167 14 8 1.6367 -6.7434 -2.3268 15 6 -0.1945 -5.9389 -3.5576 16 8 -1.1346 -5.1715 -3.5847 17 7 -0.0194 -6.8257 -4.5575 18 6 -0.9061 -6.8450 -5.6376 19 6 -2.2195 -6.4402 -5.4675 20 6 -3.1051 -6.4515 -6.5349 21 6 -2.6998 -6.8716 -7.7707 22 6 -1.3811 -7.2901 -7.9667 23 6 -0.6329 -7.7874 -9.1238 24 6 0.6185 -8.0349 -8.7053 25 7 0.7325 -7.7362 -7.3755 26 1 1.5420 -7.8332 -6.8498 27 6 -0.4737 -7.2781 -6.8937 28 6 -0.2474 -3.7991 -1.6757 29 6 0.5354 -2.4915 -1.5196 30 1 -0.4849 0.8401 0.0004 31 1 0.5328 -2.6041 0.6319 32 1 2.7848 -3.6453 0.8249 33 1 2.9657 -3.5620 -0.9441 34 1 2.1967 -5.8051 -0.3334 35 1 0.8425 -5.1215 0.6000 36 1 0.7220 -7.4503 -4.5274 37 1 -2.5562 -6.1097 -4.4960 38 1 -4.1251 -6.1292 -6.3871 39 1 -3.3978 -6.8801 -8.5948 40 1 -1.0154 -7.9283 -10.1239 41 1 1.4167 -8.4136 -9.3265 42 1 -1.0370 -3.8439 -0.9257 43 1 -0.6868 -3.8452 -2.6721 44 1 -0.1535 -1.6479 -1.5609 45 1 1.2648 -2.4059 -2.3251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547807311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = 10.016131 kcal Electronic energy + Delta-G solvation = -29195.946619 eV Core-core repulsion = 25179.468607 eV Total energy + Delta-G solvation = -4016.478012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.71818 -40.76655 -38.90229 -37.15609 -36.92887 -35.14468 -33.49394 -31.30022 -31.23956 -30.16633 -29.43404 -28.78505 -26.70519 -24.95958 -23.12919 -22.55589 -22.32128 -21.89742 -20.85423 -20.09923 -19.31384 -18.43910 -17.31487 -17.18205 -16.54075 -16.19907 -15.98012 -15.76449 -15.18886 -14.82974 -14.77988 -14.54250 -14.25635 -14.00451 -13.85112 -13.27284 -13.19014 -12.99273 -12.82247 -12.73296 -12.39639 -12.09414 -11.91651 -11.81035 -11.57515 -11.31833 -11.07173 -10.93018 -10.78319 -10.63102 -10.42112 -10.15755 -9.76446 -9.40289 -9.31927 -9.17663 -8.67933 -8.41382 -8.35738 -8.18676 -7.62464 -6.05183 -4.08610 0.80206 1.41015 1.57630 2.29177 2.50080 2.83509 3.23496 3.28174 3.35891 3.38444 3.57141 3.78323 4.33725 4.40964 4.52474 4.68366 4.86013 5.02397 5.25974 5.29018 5.33662 5.39438 5.55996 5.66689 5.73293 5.79399 5.86197 6.01365 6.11773 6.15155 6.15635 6.35058 6.39332 6.50099 6.54255 6.56310 6.63782 6.70894 6.88469 6.97064 6.99132 7.07349 7.18687 7.22299 7.59519 7.65005 7.74189 7.89002 7.97331 8.09194 8.38125 8.94173 9.55580 11.02419 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.002544 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.135459 B =11005.299846 C =11507.836762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.046 3.954 10 C -0.122 4.122 11 C 0.107 3.893 12 N -0.558 5.558 13 C 0.503 3.497 14 O -0.543 6.543 15 C 0.509 3.491 16 O -0.482 6.482 17 N -0.646 5.646 18 C 0.134 3.866 19 C -0.109 4.109 20 C -0.123 4.123 21 C -0.088 4.088 22 C -0.092 4.092 23 C -0.205 4.205 24 C 0.052 3.948 25 N -0.594 5.594 26 H 0.415 0.585 27 C 0.075 3.925 28 C 0.065 3.935 29 C -0.120 4.120 30 H 0.261 0.739 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.416 0.584 37 H 0.151 0.849 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.147 0.853 41 H 0.171 0.829 42 H 0.065 0.935 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.834 -17.275 -15.310 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.027 3.973 10 C -0.160 4.160 11 C -0.015 4.015 12 N -0.289 5.289 13 C 0.284 3.716 14 O -0.423 6.423 15 C 0.292 3.708 16 O -0.356 6.356 17 N -0.292 5.292 18 C 0.038 3.962 19 C -0.130 4.130 20 C -0.142 4.142 21 C -0.108 4.108 22 C -0.097 4.097 23 C -0.231 4.231 24 C -0.074 4.074 25 N -0.198 5.198 26 H 0.251 0.749 27 C -0.033 4.033 28 C -0.055 4.055 29 C -0.158 4.158 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.252 0.748 37 H 0.169 0.831 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.165 0.835 41 H 0.188 0.812 42 H 0.084 0.916 43 H 0.139 0.861 44 H 0.116 0.884 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.052 -17.011 -15.132 22.971 hybrid contribution 1.312 0.713 0.252 1.514 sum -1.741 -16.298 -14.879 22.137 Atomic orbital electron populations 1.69913 1.05855 1.26562 1.50286 1.24956 0.94823 0.99046 0.95033 0.86642 0.80006 0.83745 0.77988 1.20744 1.21264 1.19955 1.21163 0.93647 0.90791 1.49747 0.92693 1.18680 0.93312 0.91803 0.93506 1.22010 0.99016 0.93905 1.01100 1.21925 0.94426 1.00378 0.84742 1.48221 1.40121 1.21711 1.18812 1.19639 0.84994 0.83304 0.83651 1.90710 1.35095 1.40120 1.76393 1.20534 0.86544 0.80222 0.83455 1.90546 1.30881 1.37622 1.76504 1.43081 1.30340 1.35976 1.19763 1.16793 0.90227 1.05739 0.83476 1.21231 0.89984 1.00510 1.01283 1.20584 0.99827 1.01523 0.92288 1.20299 0.93763 0.99228 0.97468 1.19050 0.93651 1.04432 0.92610 1.21677 0.93164 1.09964 0.98269 1.21820 0.98961 1.02773 0.83860 1.41728 1.10525 1.57787 1.09714 0.74868 1.17954 0.86987 1.05090 0.93284 1.23109 0.91640 0.85487 1.05300 1.21971 0.99639 0.94857 0.99359 0.92941 0.95085 0.91717 0.92843 0.90034 0.91263 0.74783 0.83140 0.85427 0.85909 0.83493 0.81201 0.91635 0.86083 0.88421 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.73 11.69 55.43 0.65 -24.09 16 2 C 0.06 1.71 5.20 -17.82 -0.09 1.61 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -13.76 8.55 -34.44 -0.29 -14.06 16 8 H 0.05 1.46 7.75 -52.49 -0.41 1.06 16 9 C 0.05 1.08 2.00 -91.73 -0.18 0.90 16 10 C -0.12 -2.45 5.30 -26.61 -0.14 -2.59 16 11 C 0.11 1.87 6.44 -3.71 -0.02 1.85 16 12 N -0.56 -10.05 2.98 -173.30 -0.52 -10.57 16 13 C 0.50 8.50 7.73 -11.64 -0.09 8.41 16 14 O -0.54 -9.58 15.92 5.48 0.09 -9.50 16 15 C 0.51 7.77 7.59 -11.64 -0.09 7.68 16 16 O -0.48 -8.01 10.32 5.47 0.06 -7.96 16 17 N -0.65 -8.12 5.35 -10.21 -0.05 -8.18 16 18 C 0.13 1.70 6.41 -83.60 -0.54 1.16 16 19 C -0.11 -1.40 8.72 -39.32 -0.34 -1.74 16 20 C -0.12 -1.34 9.97 -39.98 -0.40 -1.74 16 21 C -0.09 -0.92 10.05 -39.59 -0.40 -1.31 16 22 C -0.09 -1.02 6.37 -105.15 -0.67 -1.69 16 23 C -0.21 -1.79 11.08 -37.66 -0.42 -2.21 16 24 C 0.05 0.38 11.82 -16.75 -0.20 0.19 16 25 N -0.59 -5.10 6.07 -10.54 -0.06 -5.17 16 26 H 0.41 2.64 8.96 -40.82 -0.37 2.27 16 27 C 0.08 0.86 7.19 -83.80 -0.60 0.26 16 28 C 0.06 1.25 5.98 -3.69 -0.02 1.23 16 29 C -0.12 -2.72 5.16 -26.61 -0.14 -2.85 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.36 7.00 -51.93 -0.36 1.00 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.42 4.44 8.28 -40.82 -0.34 4.10 16 37 H 0.15 2.08 5.81 -52.48 -0.30 1.77 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.12 2.29 4.32 -54.81 -0.24 2.05 16 44 H 0.10 2.47 6.37 -51.93 -0.33 2.14 16 45 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 366.63 15.07 5.53 5.53 Total: -1.00 -30.93 366.63 -9.69 -40.62 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.71 Total: 8.25 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -4.64 Total: -4.92 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.01 Total: -48.00 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.14 Total: -17.46 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.93 -9.69 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547807311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.634 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds