Wall clock time and date at job start Sat Apr 11 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00505 * 2 1 4 4 H 1.48496 * 109.47498 * 275.00259 * 3 2 1 5 5 H 1.48507 * 109.46779 * 34.99816 * 3 2 1 6 6 H 1.48501 * 109.47261 * 154.99799 * 3 2 1 7 7 C 1.37875 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00211 * 187.52929 * 7 2 1 9 9 C 1.50700 * 119.99979 * 7.51936 * 7 2 1 10 10 C 1.53045 * 109.46188 * 180.39553 * 9 7 2 11 11 C 1.53189 * 109.31429 * 178.62925 * 10 9 7 12 12 N 1.46925 * 108.89066 * 54.56532 * 11 10 9 13 13 C 1.34784 * 120.63059 * 126.45952 * 12 11 10 14 14 O 1.21371 * 119.99511 * 351.65534 * 13 12 11 15 15 C 1.49318 * 120.00195 * 171.65183 * 13 12 11 16 16 O 1.21386 * 120.00184 * 353.37120 * 15 13 12 17 17 N 1.34785 * 119.99816 * 173.36873 * 15 13 12 18 18 C 1.39765 * 119.99750 * 181.18702 * 17 15 13 19 19 C 1.38482 * 120.18407 * 331.51334 * 18 17 15 20 20 C 1.38693 * 120.57737 * 179.76070 * 19 18 17 21 21 C 1.36672 * 120.59843 * 0.49331 * 20 19 18 22 22 C 1.39738 * 119.91648 * 359.76950 * 21 20 19 23 23 C 1.46488 * 133.98445 * 179.97438 * 22 21 20 24 24 C 1.34262 * 107.00266 * 180.02562 * 23 22 21 25 25 N 1.36771 * 109.90717 * 359.97438 * 24 23 22 26 26 H 0.97006 * 125.07071 * 179.97438 * 25 24 23 27 27 C 1.37734 * 109.86114 * 0.02562 * 25 24 23 28 28 C 1.46960 * 118.72080 * 306.64160 * 12 11 10 29 29 C 1.53043 * 109.44750 * 60.33903 * 9 7 2 30 30 H 0.97004 * 119.99283 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46616 * 300.37312 * 9 7 2 32 32 H 1.08999 * 109.49199 * 58.68144 * 10 9 7 33 33 H 1.08995 * 109.52808 * 298.60432 * 10 9 7 34 34 H 1.08995 * 109.59141 * 174.42357 * 11 10 9 35 35 H 1.08997 * 109.59183 * 294.71382 * 11 10 9 36 36 H 0.96995 * 120.00387 * 1.18447 * 17 15 13 37 37 H 1.08008 * 119.70904 * 359.97244 * 19 18 17 38 38 H 1.07994 * 119.69769 * 180.23777 * 20 19 18 39 39 H 1.08001 * 120.04704 * 179.78164 * 21 20 19 40 40 H 1.07995 * 126.50235 * 0.02562 * 23 22 21 41 41 H 1.07995 * 125.04424 * 179.97438 * 24 23 22 42 42 H 1.08995 * 109.47061 * 293.57408 * 28 12 11 43 43 H 1.09001 * 109.71133 * 173.28243 * 28 12 11 44 44 H 1.08995 * 109.50185 * 301.33470 * 29 9 7 45 45 H 1.09006 * 109.49746 * 61.42745 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3911 2.1074 -1.3947 5 1 1.5035 2.6198 0.8031 6 1 3.5956 1.4118 0.5917 7 6 2.0044 -1.1941 -0.0005 8 1 3.0774 -1.1982 0.1220 9 6 1.2606 -2.4934 -0.1719 10 6 2.2521 -3.6584 -0.1259 11 6 1.4887 -4.9792 -0.2661 12 7 0.6724 -4.9296 -1.4867 13 6 0.7681 -5.9004 -2.4167 14 8 1.6367 -6.7434 -2.3268 15 6 -0.1945 -5.9389 -3.5576 16 8 -1.1346 -5.1715 -3.5847 17 7 -0.0194 -6.8257 -4.5575 18 6 -0.9061 -6.8450 -5.6376 19 6 -2.2195 -6.4402 -5.4675 20 6 -3.1051 -6.4515 -6.5349 21 6 -2.6998 -6.8716 -7.7707 22 6 -1.3811 -7.2901 -7.9667 23 6 -0.6329 -7.7874 -9.1238 24 6 0.6185 -8.0349 -8.7053 25 7 0.7325 -7.7362 -7.3755 26 1 1.5420 -7.8332 -6.8498 27 6 -0.4737 -7.2781 -6.8937 28 6 -0.2474 -3.7991 -1.6757 29 6 0.5354 -2.4915 -1.5196 30 1 -0.4849 0.8401 0.0004 31 1 0.5328 -2.6041 0.6319 32 1 2.7848 -3.6453 0.8249 33 1 2.9657 -3.5620 -0.9441 34 1 2.1967 -5.8051 -0.3334 35 1 0.8425 -5.1215 0.6000 36 1 0.7220 -7.4503 -4.5274 37 1 -2.5562 -6.1097 -4.4960 38 1 -4.1251 -6.1292 -6.3871 39 1 -3.3978 -6.8801 -8.5948 40 1 -1.0154 -7.9283 -10.1239 41 1 1.4167 -8.4136 -9.3265 42 1 -1.0370 -3.8439 -0.9257 43 1 -0.6868 -3.8452 -2.6721 44 1 -0.1535 -1.6479 -1.5609 45 1 1.2648 -2.4059 -2.3251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547807311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:15 Heat of formation + Delta-G solvation = -8.542592 kcal Electronic energy + Delta-G solvation = -29196.751386 eV Core-core repulsion = 25179.468607 eV Total energy + Delta-G solvation = -4017.282779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.64734 -41.86834 -40.18181 -38.66596 -37.87708 -36.23417 -35.26151 -33.08858 -32.05015 -31.81792 -30.25043 -29.59042 -28.38603 -26.42333 -24.50452 -24.15429 -23.20968 -23.06066 -21.82522 -21.18382 -20.70122 -19.56138 -18.57432 -18.43508 -18.14092 -17.54046 -17.26766 -16.66572 -16.52025 -16.35965 -15.77431 -15.66512 -15.42770 -15.23105 -14.85393 -14.84088 -14.66867 -14.47636 -14.03037 -13.88206 -13.70509 -13.37136 -13.23458 -12.91694 -12.83130 -12.60579 -12.58866 -12.47537 -12.24382 -12.18214 -11.99907 -11.73314 -11.54537 -11.10126 -10.98566 -10.44561 -10.27616 -10.04780 -9.76152 -9.20122 -8.43057 -8.11827 -6.21889 -0.18978 0.40262 0.64328 1.09459 1.39541 1.41963 1.50876 1.77863 1.99990 2.15939 2.32961 2.42807 2.92499 3.06361 3.17099 3.81850 4.04458 4.07372 4.08929 4.20591 4.25459 4.28924 4.44154 4.47690 4.50685 4.52880 4.71756 4.74122 4.84788 4.90669 5.00282 5.06271 5.10861 5.16294 5.28613 5.32119 5.35418 5.39474 5.62044 5.66708 5.78158 5.79910 5.88439 5.94906 6.02393 6.16376 6.16963 6.35533 6.52033 6.63382 6.74409 6.88242 7.45138 8.94497 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.002544 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.135459 B =11005.299846 C =11507.836762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.947 3.053 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.051 0.949 9 C 0.043 3.957 10 C -0.113 4.113 11 C 0.112 3.888 12 N -0.566 5.566 13 C 0.507 3.493 14 O -0.547 6.547 15 C 0.509 3.491 16 O -0.500 6.500 17 N -0.628 5.628 18 C 0.114 3.886 19 C -0.127 4.127 20 C -0.133 4.133 21 C -0.087 4.087 22 C -0.112 4.112 23 C -0.223 4.223 24 C 0.066 3.934 25 N -0.591 5.591 26 H 0.425 0.575 27 C 0.060 3.940 28 C 0.082 3.918 29 C -0.110 4.110 30 H 0.261 0.739 31 H 0.006 0.994 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.424 0.576 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.169 0.831 41 H 0.212 0.788 42 H 0.064 0.936 43 H 0.129 0.871 44 H 0.068 0.932 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -18.695 -17.257 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.069 0.931 9 C 0.024 3.976 10 C -0.151 4.151 11 C -0.009 4.009 12 N -0.297 5.297 13 C 0.289 3.711 14 O -0.426 6.426 15 C 0.293 3.707 16 O -0.376 6.376 17 N -0.273 5.273 18 C 0.018 3.982 19 C -0.148 4.148 20 C -0.152 4.152 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.247 4.247 24 C -0.061 4.061 25 N -0.195 5.195 26 H 0.263 0.737 27 C -0.049 4.049 28 C -0.039 4.039 29 C -0.149 4.149 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.263 0.737 37 H 0.153 0.847 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.186 0.814 41 H 0.228 0.772 42 H 0.082 0.918 43 H 0.146 0.854 44 H 0.086 0.914 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.062 -18.475 -17.096 25.256 hybrid contribution 1.037 1.071 0.754 1.671 sum -1.024 -17.405 -16.342 23.896 Atomic orbital electron populations 1.70028 1.07025 1.27210 1.50942 1.25671 0.95602 1.02130 0.94872 0.85706 0.78972 0.80011 0.77948 1.20482 1.20940 1.19359 1.21532 0.93707 0.92356 1.49665 0.93089 1.18645 0.93475 0.92436 0.93041 1.21853 0.98159 0.93806 1.01296 1.21890 0.94688 0.99181 0.85175 1.48172 1.40270 1.21824 1.19439 1.19851 0.84929 0.82686 0.83591 1.90701 1.35331 1.40097 1.76506 1.20215 0.86073 0.80770 0.83682 1.90532 1.31465 1.38694 1.76889 1.42903 1.30336 1.35080 1.19018 1.16898 0.90250 1.07138 0.83899 1.21249 0.90798 1.01458 1.01314 1.20796 1.00427 1.01807 0.92182 1.20626 0.94185 0.97921 0.97815 1.19530 0.94066 1.04526 0.93607 1.22030 0.93509 1.10508 0.98648 1.22525 0.99630 1.00657 0.83263 1.41863 1.10079 1.57103 1.10432 0.73719 1.18022 0.88427 1.05590 0.92899 1.22830 0.91094 0.84264 1.05725 1.21747 0.98892 0.95854 0.98375 0.92971 0.97600 0.90861 0.93547 0.88520 0.90058 0.73735 0.84705 0.83776 0.83496 0.81397 0.77174 0.91786 0.85444 0.91395 0.95418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.07 11.69 21.45 0.25 -51.82 16 2 C 0.02 0.90 5.20 84.66 0.44 1.34 16 3 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.53 -29.04 8.55 25.60 0.22 -28.82 16 8 H 0.05 2.74 7.75 -2.91 -0.02 2.72 16 9 C 0.04 2.07 2.00 -11.51 -0.02 2.05 16 10 C -0.11 -4.51 5.30 30.67 0.16 -4.35 16 11 C 0.11 3.83 6.44 86.36 0.56 4.38 16 12 N -0.57 -20.18 2.98 -820.55 -2.45 -22.63 16 13 C 0.51 16.77 7.73 87.23 0.67 17.44 16 14 O -0.55 -18.48 15.92 -3.31 -0.05 -18.53 16 15 C 0.51 15.47 7.59 87.23 0.66 16.14 16 16 O -0.50 -16.90 10.32 -3.36 -0.03 -16.94 16 17 N -0.63 -15.48 5.35 -304.55 -1.63 -17.11 16 18 C 0.11 2.86 6.41 38.29 0.25 3.10 16 19 C -0.13 -3.31 8.72 22.44 0.20 -3.12 16 20 C -0.13 -2.85 9.97 22.01 0.22 -2.63 16 21 C -0.09 -1.68 10.05 22.27 0.22 -1.46 16 22 C -0.11 -2.30 6.37 -20.21 -0.13 -2.43 16 23 C -0.22 -3.25 11.08 23.51 0.26 -2.99 16 24 C 0.07 0.74 11.82 83.01 0.98 1.72 16 25 N -0.59 -8.78 6.07 -187.26 -1.14 -9.91 16 26 H 0.42 4.41 8.96 -92.70 -0.83 3.58 16 27 C 0.06 1.29 7.19 39.13 0.28 1.58 16 28 C 0.08 3.20 5.98 86.36 0.52 3.71 16 29 C -0.11 -5.14 5.16 30.67 0.16 -4.98 16 30 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.10 3.05 7.00 -2.39 -0.02 3.03 16 35 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.42 8.63 8.28 -92.71 -0.77 7.86 16 37 H 0.14 3.88 5.81 -2.91 -0.02 3.87 16 38 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 40 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.21 0.52 8.06 -2.91 -0.02 0.50 16 42 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.13 4.91 4.32 -47.98 -0.21 4.71 16 44 H 0.07 3.58 6.37 -2.39 -0.02 3.57 16 45 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -67.37 366.63 1.89 -65.48 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.74 Total: 25.30 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 5.64 Total: 0.69 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -4.96 Total: -101.48 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.09 Total: -35.47 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.37 1.89 -65.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547807311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.939 kcal (2) G-P(sol) polarization free energy of solvation -67.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds