Wall clock time and date at job start Sat Apr 11 2020 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99540 * 2 1 4 4 H 1.48498 * 109.47496 * 270.00049 * 3 2 1 5 5 H 1.48501 * 109.47130 * 30.00092 * 3 2 1 6 6 H 1.48496 * 109.47127 * 149.99766 * 3 2 1 7 7 C 1.37872 * 120.00652 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99716 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47237 * 180.02562 * 9 7 2 11 11 N 1.39913 * 125.80601 * 270.00382 * 10 9 7 12 12 C 1.30457 * 109.21797 * 179.97438 * 11 10 9 13 13 C 1.41092 * 108.30435 * 359.97438 * 12 11 10 14 14 C 1.47172 * 126.47828 * 180.26750 * 13 12 11 15 15 O 1.21638 * 120.00004 * 127.33346 * 14 13 12 16 16 N 1.34772 * 120.00205 * 307.32573 * 14 13 12 17 17 C 1.47147 * 120.87524 * 184.07214 * 16 14 13 18 18 C 1.52933 * 108.45970 * 230.51733 * 17 16 14 19 19 C 1.53150 * 109.02286 * 308.42455 * 18 17 16 20 20 O 1.42938 * 109.51369 * 58.92304 * 19 18 17 21 21 C 1.43108 * 113.96121 * 297.53187 * 20 19 18 22 22 C 1.35176 * 125.80930 * 89.99617 * 10 9 7 23 23 C 1.47741 * 126.46949 * 0.04323 * 22 10 9 24 24 C 1.39612 * 120.14918 * 314.69822 * 23 22 10 25 25 C 1.37943 * 119.85062 * 179.79483 * 24 23 22 26 26 C 1.38362 * 120.14811 * 0.46840 * 25 24 23 27 27 C 1.38361 * 120.30148 * 359.78557 * 26 25 24 28 28 C 1.37953 * 120.14872 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00396 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47412 * 60.00028 * 9 7 2 31 31 H 1.09003 * 109.47466 * 300.00322 * 9 7 2 32 32 H 1.08002 * 125.85104 * 180.02562 * 12 11 10 33 33 H 1.09005 * 109.71197 * 350.25456 * 17 16 14 34 34 H 1.08993 * 109.71390 * 110.89179 * 17 16 14 35 35 H 1.09005 * 109.63728 * 188.49606 * 18 17 16 36 36 H 1.08997 * 109.49252 * 68.27327 * 18 17 16 37 37 H 1.08993 * 109.46480 * 298.90747 * 19 18 17 38 38 H 1.09004 * 109.45486 * 178.92952 * 19 18 17 39 39 H 1.09003 * 109.59456 * 295.86032 * 21 20 19 40 40 H 1.08997 * 109.60083 * 175.38720 * 21 20 19 41 41 H 1.08008 * 120.07488 * 0.02847 * 24 23 22 42 42 H 1.07999 * 119.92724 * 180.23183 * 25 24 23 43 43 H 1.08000 * 119.84934 * 179.76938 * 26 25 24 44 44 H 1.07996 * 119.92926 * 180.02562 * 27 26 25 45 45 H 1.07999 * 120.07724 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4404 0.7001 7 6 2.0047 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6125 -0.0005 11 7 2.7353 -4.2346 -1.1352 12 6 3.5482 -5.1846 -0.7628 13 6 3.5763 -5.2161 0.6475 14 6 4.3668 -6.1309 1.4866 15 8 5.0896 -5.6857 2.3578 16 7 4.2899 -7.4620 1.2899 17 6 5.0020 -8.3984 2.1739 18 6 5.8032 -9.3696 1.3058 19 6 4.8749 -9.9785 0.2509 20 8 4.3131 -8.9361 -0.5497 21 6 3.4973 -8.0164 0.1827 22 6 2.7173 -4.2136 1.0957 23 6 2.4244 -3.8724 2.5030 24 6 2.4114 -2.5378 2.9128 25 6 2.1330 -2.2259 4.2273 26 6 1.8767 -3.2327 5.1412 27 6 1.8932 -4.5577 4.7430 28 6 2.1653 -4.8833 3.4303 29 1 -0.4850 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 4.1050 -5.8349 -1.4212 33 1 5.6787 -7.8460 2.8259 34 1 4.2833 -8.9547 2.7755 35 1 6.2168 -10.1624 1.9291 36 1 6.6136 -8.8329 0.8126 37 1 4.0741 -10.5282 0.7455 38 1 5.4433 -10.6580 -0.3842 39 1 2.6266 -8.5372 0.5811 40 1 3.1742 -7.2099 -0.4756 41 1 2.6151 -1.7511 2.2013 42 1 2.1189 -1.1937 4.5449 43 1 1.6630 -2.9832 6.1700 44 1 1.6919 -5.3387 5.4612 45 1 2.1775 -5.9179 3.1207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552008538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:20 Heat of formation + Delta-G solvation = 27.896838 kcal Electronic energy + Delta-G solvation = -30159.715753 eV Core-core repulsion = 26144.013106 eV Total energy + Delta-G solvation = -4015.702647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.04396 -39.80793 -38.39358 -37.94315 -34.36444 -34.02061 -32.79100 -32.18249 -31.35665 -30.46874 -28.57843 -27.54699 -26.11389 -25.65594 -23.80643 -22.81096 -22.27993 -22.04785 -20.80203 -19.67770 -18.98836 -17.43976 -16.93280 -16.82686 -16.41994 -15.77846 -15.57217 -15.28774 -15.25206 -14.78204 -14.71571 -14.34680 -14.18218 -14.03610 -13.72581 -13.26567 -13.20000 -13.04038 -13.01035 -12.58260 -12.30247 -12.24898 -11.81875 -11.57127 -11.48641 -11.18207 -11.08835 -10.97492 -10.94486 -10.73746 -10.40494 -10.34398 -10.09212 -9.97769 -9.52857 -9.17929 -8.82122 -8.75151 -8.54042 -8.25329 -7.80858 -6.37863 -4.46144 1.32589 1.81254 2.38042 2.69860 2.89486 3.15886 3.22511 3.23236 3.31373 3.41310 3.68106 4.18426 4.22774 4.55797 4.62835 4.81247 4.86182 4.91181 4.96438 5.04433 5.21440 5.21952 5.24814 5.29774 5.36048 5.45385 5.48502 5.53573 5.75358 5.78017 5.79455 5.89384 5.91682 6.14120 6.26231 6.39789 6.47471 6.65273 6.75393 6.85334 6.86455 6.92320 6.96449 7.08176 7.34250 7.41703 7.49989 7.69415 7.72322 8.28119 8.40508 8.59349 9.20252 10.69757 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.003786 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.361646 B = 7394.306204 C = 8723.604496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.251 3.749 10 N -0.304 5.304 11 N -0.283 5.283 12 C 0.051 3.949 13 C -0.313 4.313 14 C 0.613 3.387 15 O -0.531 6.531 16 N -0.635 5.635 17 C 0.108 3.892 18 C -0.170 4.170 19 C 0.059 3.941 20 O -0.386 6.386 21 C 0.271 3.729 22 C 0.185 3.815 23 C -0.034 4.034 24 C -0.078 4.078 25 C -0.123 4.123 26 C -0.112 4.112 27 C -0.131 4.131 28 C -0.084 4.084 29 H 0.270 0.730 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.183 0.817 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.129 0.871 41 H 0.154 0.846 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.672 -16.831 6.382 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.133 4.133 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.134 3.866 10 N -0.081 5.081 11 N -0.104 5.104 12 C -0.133 4.133 13 C -0.328 4.328 14 C 0.403 3.597 15 O -0.407 6.407 16 N -0.378 5.378 17 C -0.015 4.015 18 C -0.208 4.208 19 C -0.018 4.018 20 O -0.301 6.301 21 C 0.111 3.889 22 C 0.049 3.951 23 C -0.036 4.036 24 C -0.096 4.096 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.149 4.149 28 C -0.103 4.103 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.200 0.800 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.146 0.854 41 H 0.171 0.829 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.268 -15.713 5.539 17.199 hybrid contribution 0.737 0.384 0.781 1.140 sum 5.005 -15.329 6.320 17.320 Atomic orbital electron populations 1.69911 1.06053 1.27951 1.48156 1.24901 0.94948 0.99396 0.94079 0.86390 0.79838 0.82112 0.78687 1.20151 1.20730 1.19401 1.21217 0.93770 0.89293 1.53800 0.91438 1.19928 0.86118 0.80246 1.00339 1.49599 1.32070 1.25206 1.01209 1.77137 1.14136 1.10005 1.09081 1.23690 0.98841 0.98024 0.92783 1.19765 1.12731 1.06637 0.93703 1.17287 0.79890 0.80419 0.82119 1.90759 1.39034 1.76269 1.34594 1.48716 1.51354 1.06126 1.31566 1.21515 0.96185 0.91086 0.92672 1.22472 0.99622 0.99849 0.98857 1.22556 0.96112 0.89408 0.93720 1.88098 1.67187 1.39736 1.35094 1.23139 0.87837 0.91684 0.86253 1.19615 0.95004 0.92053 0.88382 1.17956 1.02510 0.94040 0.89093 1.21962 0.94765 0.96100 0.96819 1.21090 1.00375 0.99355 0.93269 1.21196 0.99628 0.92980 0.99284 1.20871 1.02171 0.96399 0.95458 1.20973 0.98466 0.97904 0.92987 0.92024 0.92364 0.92471 0.80031 0.88553 0.91571 0.89830 0.90442 0.92936 0.88668 0.92085 0.85389 0.82865 0.85837 0.86378 0.86291 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.74 13.29 55.43 0.74 -23.01 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.54 -14.07 7.24 -34.44 -0.25 -14.32 16 8 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.25 6.12 5.42 -5.19 -0.03 6.09 16 10 N -0.30 -6.79 3.59 -58.19 -0.21 -7.00 16 11 N -0.28 -6.00 12.48 30.82 0.38 -5.61 16 12 C 0.05 0.92 9.73 -17.05 -0.17 0.75 16 13 C -0.31 -5.85 5.19 -104.75 -0.54 -6.39 16 14 C 0.61 10.66 6.24 -12.64 -0.08 10.58 16 15 O -0.53 -10.82 16.55 5.24 0.09 -10.73 16 16 N -0.64 -8.56 3.09 -179.59 -0.55 -9.12 16 17 C 0.11 1.16 6.50 -3.72 -0.02 1.14 16 18 C -0.17 -1.44 6.30 -26.69 -0.17 -1.61 16 19 C 0.06 0.49 6.80 37.23 0.25 0.74 16 20 O -0.39 -4.41 10.86 -35.23 -0.38 -4.80 16 21 C 0.27 3.19 7.23 60.13 0.43 3.63 16 22 C 0.18 3.82 6.50 -82.07 -0.53 3.29 16 23 C -0.03 -0.67 5.32 -104.99 -0.56 -1.23 16 24 C -0.08 -1.54 8.64 -39.18 -0.34 -1.88 16 25 C -0.12 -2.06 10.03 -39.64 -0.40 -2.46 16 26 C -0.11 -1.64 10.04 -39.49 -0.40 -2.04 16 27 C -0.13 -1.92 10.03 -39.64 -0.40 -2.32 16 28 C -0.08 -1.42 9.08 -39.17 -0.36 -1.77 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.06 1.42 7.31 -51.93 -0.38 1.04 16 32 H 0.18 2.61 7.54 -52.49 -0.40 2.21 16 33 H 0.10 1.18 7.06 -51.93 -0.37 0.82 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.13 1.63 4.15 -51.93 -0.22 1.41 16 41 H 0.15 3.39 5.56 -52.48 -0.29 3.10 16 42 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 45 H 0.11 1.77 7.54 -52.49 -0.40 1.38 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -30.65 372.91 -8.80 -39.46 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.82 Total: 5.94 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.65 Total: -6.04 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.36 Total: -44.74 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.30 Total: -15.53 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.65 -8.80 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552008538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.354 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds