Wall clock time and date at job start Sat Apr 11 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99540 * 2 1 4 4 H 1.48498 * 109.47496 * 270.00049 * 3 2 1 5 5 H 1.48501 * 109.47130 * 30.00092 * 3 2 1 6 6 H 1.48496 * 109.47127 * 149.99766 * 3 2 1 7 7 C 1.37872 * 120.00652 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99716 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47237 * 180.02562 * 9 7 2 11 11 N 1.39913 * 125.80601 * 270.00382 * 10 9 7 12 12 C 1.30457 * 109.21797 * 179.97438 * 11 10 9 13 13 C 1.41092 * 108.30435 * 359.97438 * 12 11 10 14 14 C 1.47172 * 126.47828 * 180.26750 * 13 12 11 15 15 O 1.21638 * 120.00004 * 127.33346 * 14 13 12 16 16 N 1.34772 * 120.00205 * 307.32573 * 14 13 12 17 17 C 1.47147 * 120.87524 * 184.07214 * 16 14 13 18 18 C 1.52933 * 108.45970 * 230.51733 * 17 16 14 19 19 C 1.53150 * 109.02286 * 308.42455 * 18 17 16 20 20 O 1.42938 * 109.51369 * 58.92304 * 19 18 17 21 21 C 1.43108 * 113.96121 * 297.53187 * 20 19 18 22 22 C 1.35176 * 125.80930 * 89.99617 * 10 9 7 23 23 C 1.47741 * 126.46949 * 0.04323 * 22 10 9 24 24 C 1.39612 * 120.14918 * 314.69822 * 23 22 10 25 25 C 1.37943 * 119.85062 * 179.79483 * 24 23 22 26 26 C 1.38362 * 120.14811 * 0.46840 * 25 24 23 27 27 C 1.38361 * 120.30148 * 359.78557 * 26 25 24 28 28 C 1.37953 * 120.14872 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00396 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47412 * 60.00028 * 9 7 2 31 31 H 1.09003 * 109.47466 * 300.00322 * 9 7 2 32 32 H 1.08002 * 125.85104 * 180.02562 * 12 11 10 33 33 H 1.09005 * 109.71197 * 350.25456 * 17 16 14 34 34 H 1.08993 * 109.71390 * 110.89179 * 17 16 14 35 35 H 1.09005 * 109.63728 * 188.49606 * 18 17 16 36 36 H 1.08997 * 109.49252 * 68.27327 * 18 17 16 37 37 H 1.08993 * 109.46480 * 298.90747 * 19 18 17 38 38 H 1.09004 * 109.45486 * 178.92952 * 19 18 17 39 39 H 1.09003 * 109.59456 * 295.86032 * 21 20 19 40 40 H 1.08997 * 109.60083 * 175.38720 * 21 20 19 41 41 H 1.08008 * 120.07488 * 0.02847 * 24 23 22 42 42 H 1.07999 * 119.92724 * 180.23183 * 25 24 23 43 43 H 1.08000 * 119.84934 * 179.76938 * 26 25 24 44 44 H 1.07996 * 119.92926 * 180.02562 * 27 26 25 45 45 H 1.07999 * 120.07724 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4404 0.7001 7 6 2.0047 -1.1939 -0.0005 8 1 3.0846 -1.1938 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6125 -0.0005 11 7 2.7353 -4.2346 -1.1352 12 6 3.5482 -5.1846 -0.7628 13 6 3.5763 -5.2161 0.6475 14 6 4.3668 -6.1309 1.4866 15 8 5.0896 -5.6857 2.3578 16 7 4.2899 -7.4620 1.2899 17 6 5.0020 -8.3984 2.1739 18 6 5.8032 -9.3696 1.3058 19 6 4.8749 -9.9785 0.2509 20 8 4.3131 -8.9361 -0.5497 21 6 3.4973 -8.0164 0.1827 22 6 2.7173 -4.2136 1.0957 23 6 2.4244 -3.8724 2.5030 24 6 2.4114 -2.5378 2.9128 25 6 2.1330 -2.2259 4.2273 26 6 1.8767 -3.2327 5.1412 27 6 1.8932 -4.5577 4.7430 28 6 2.1653 -4.8833 3.4303 29 1 -0.4850 0.8400 0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 4.1050 -5.8349 -1.4212 33 1 5.6787 -7.8460 2.8259 34 1 4.2833 -8.9547 2.7755 35 1 6.2168 -10.1624 1.9291 36 1 6.6136 -8.8329 0.8126 37 1 4.0741 -10.5282 0.7455 38 1 5.4433 -10.6580 -0.3842 39 1 2.6266 -8.5372 0.5811 40 1 3.1742 -7.2099 -0.4756 41 1 2.6151 -1.7511 2.2013 42 1 2.1189 -1.1937 4.5449 43 1 1.6630 -2.9832 6.1700 44 1 1.6919 -5.3387 5.4612 45 1 2.1775 -5.9179 3.1207 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000552008538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:19 Heat of formation + Delta-G solvation = 8.594791 kcal Electronic energy + Delta-G solvation = -30160.552752 eV Core-core repulsion = 26144.013106 eV Total energy + Delta-G solvation = -4016.539646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.51669 -40.92188 -39.70978 -39.09631 -35.89704 -35.40166 -34.03995 -33.55458 -32.81822 -31.78027 -29.97103 -29.32703 -27.14006 -26.61418 -25.48085 -24.25534 -23.62429 -23.18926 -22.04084 -21.05049 -20.24106 -18.89491 -18.72658 -18.03194 -17.59707 -17.01767 -16.73341 -16.61246 -16.29093 -16.13747 -16.11624 -15.64299 -15.46881 -15.32086 -14.98115 -14.78648 -14.41601 -14.25687 -14.22670 -13.99316 -13.81534 -13.59013 -13.54609 -13.04131 -12.78282 -12.41495 -12.38555 -12.26341 -12.23572 -12.07116 -11.89070 -11.83634 -11.83227 -11.02710 -10.83602 -10.77499 -10.69340 -9.98767 -9.85401 -9.73384 -9.26295 -8.38800 -6.54013 -0.05993 0.50304 0.95696 1.22688 1.34614 1.36369 1.45074 1.55426 1.85277 2.07873 2.30296 2.86310 2.88988 2.93251 3.43817 3.52727 3.83982 3.89475 3.95660 3.99774 4.06329 4.11993 4.22443 4.31435 4.33003 4.41661 4.49335 4.54710 4.59428 4.62369 4.74811 4.81267 4.84346 4.89663 4.96341 4.99921 5.15431 5.20922 5.41408 5.44417 5.48806 5.55919 5.58573 5.61531 5.72650 5.95097 6.06440 6.06629 6.21494 6.52211 6.72347 7.10326 7.15430 8.69035 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.003786 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.361646 B = 7394.306204 C = 8723.604496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.032 3.968 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.049 0.951 9 C 0.273 3.727 10 N -0.329 5.329 11 N -0.318 5.318 12 C 0.071 3.929 13 C -0.313 4.313 14 C 0.616 3.384 15 O -0.568 6.568 16 N -0.626 5.626 17 C 0.101 3.899 18 C -0.161 4.161 19 C 0.052 3.948 20 O -0.400 6.400 21 C 0.271 3.729 22 C 0.173 3.827 23 C -0.062 4.062 24 C -0.109 4.109 25 C -0.131 4.131 26 C -0.101 4.101 27 C -0.122 4.122 28 C -0.089 4.089 29 H 0.275 0.725 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.218 0.782 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.137 0.863 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.173 -19.204 8.297 21.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.170 4.170 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.067 0.933 9 C 0.154 3.846 10 N -0.105 5.105 11 N -0.139 5.139 12 C -0.114 4.114 13 C -0.328 4.328 14 C 0.405 3.595 15 O -0.447 6.447 16 N -0.366 5.366 17 C -0.021 4.021 18 C -0.200 4.200 19 C -0.024 4.024 20 O -0.316 6.316 21 C 0.111 3.889 22 C 0.039 3.961 23 C -0.064 4.064 24 C -0.128 4.128 25 C -0.149 4.149 26 C -0.119 4.119 27 C -0.140 4.140 28 C -0.108 4.108 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.234 0.766 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.134 0.866 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.155 0.845 43 H 0.178 0.822 44 H 0.178 0.822 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.767 -18.144 7.441 20.182 hybrid contribution 0.633 0.933 0.242 1.153 sum 5.400 -17.212 7.683 19.607 Atomic orbital electron populations 1.69986 1.07168 1.28937 1.48736 1.25604 0.95683 1.02215 0.93484 0.85485 0.78647 0.78556 0.78691 1.19895 1.19343 1.19547 1.21233 0.92876 0.90546 1.53978 0.93300 1.19371 0.86113 0.80807 0.98295 1.49326 1.33192 1.25801 1.02225 1.77071 1.15864 1.11470 1.09454 1.24219 0.97275 0.96773 0.93088 1.20028 1.12032 1.06546 0.94228 1.17057 0.79363 0.81582 0.81471 1.90737 1.40687 1.77231 1.36039 1.48747 1.50874 1.05052 1.31970 1.21794 0.96682 0.90833 0.92754 1.22445 0.98764 0.99867 0.98874 1.22842 0.96816 0.88838 0.93924 1.88088 1.67329 1.40313 1.35844 1.23184 0.88325 0.91806 0.85599 1.20105 0.95064 0.92153 0.88747 1.18152 1.04375 0.94721 0.89129 1.21787 0.97570 0.95586 0.97873 1.21336 1.00124 1.01024 0.92418 1.21650 0.97335 0.92287 1.00635 1.21376 0.99920 0.97648 0.95022 1.21177 0.98333 0.97660 0.93659 0.91603 0.94887 0.93776 0.76614 0.90339 0.88909 0.86635 0.92262 0.90853 0.86789 0.89684 0.86811 0.86379 0.84470 0.82195 0.82171 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.56 13.29 21.45 0.28 -50.28 16 2 C 0.03 1.74 5.46 84.65 0.46 2.20 16 3 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.55 -30.20 7.24 25.60 0.19 -30.01 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 9 C 0.27 14.29 5.42 85.63 0.46 14.76 16 10 N -0.33 -15.62 3.59 -338.02 -1.21 -16.84 16 11 N -0.32 -14.11 12.48 -56.40 -0.70 -14.81 16 12 C 0.07 2.59 9.73 85.60 0.83 3.43 16 13 C -0.31 -11.95 5.19 -19.95 -0.10 -12.06 16 14 C 0.62 21.31 6.24 86.59 0.54 21.85 16 15 O -0.57 -23.36 16.55 -4.15 -0.07 -23.43 16 16 N -0.63 -15.90 3.09 -940.34 -2.90 -18.80 16 17 C 0.10 1.93 6.50 86.23 0.56 2.49 16 18 C -0.16 -2.24 6.30 30.62 0.19 -2.05 16 19 C 0.05 0.68 6.80 72.03 0.49 1.16 16 20 O -0.40 -8.13 10.86 -148.98 -1.62 -9.75 16 21 C 0.27 5.83 7.23 127.67 0.92 6.75 16 22 C 0.17 7.52 6.50 41.43 0.27 7.79 16 23 C -0.06 -2.52 5.32 -20.10 -0.11 -2.62 16 24 C -0.11 -4.56 8.64 22.53 0.19 -4.36 16 25 C -0.13 -4.37 10.03 22.23 0.22 -4.15 16 26 C -0.10 -2.67 10.04 22.33 0.22 -2.45 16 27 C -0.12 -3.23 10.03 22.23 0.22 -3.00 16 28 C -0.09 -2.94 9.08 22.53 0.20 -2.74 16 29 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 2.39 7.31 -2.39 -0.02 2.37 16 32 H 0.22 6.04 7.54 -2.91 -0.02 6.02 16 33 H 0.08 1.83 7.06 -2.38 -0.02 1.81 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.12 0.90 8.14 -2.38 -0.02 0.89 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.11 2.77 4.15 -2.39 -0.01 2.76 16 41 H 0.12 5.69 5.56 -2.91 -0.02 5.67 16 42 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 43 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 44 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 45 H 0.12 3.70 7.54 -2.91 -0.02 3.68 16 Total: -1.00 -71.30 372.91 2.60 -68.70 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 1.02 Total: 23.43 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 5.78 Total: -3.00 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -4.54 Total: -100.73 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.69 Total: -33.18 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -71.30 2.60 -68.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552008538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.291 kcal (2) G-P(sol) polarization free energy of solvation -71.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds