Wall clock time and date at job start Sat Apr 11 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48505 * 109.47142 * 271.29864 * 3 2 1 5 5 H 1.48498 * 109.47542 * 31.30169 * 3 2 1 6 6 H 1.48506 * 109.46952 * 151.30187 * 3 2 1 7 7 C 1.37876 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00136 * 1.69091 * 7 2 1 9 9 C 1.50697 * 119.99754 * 181.68355 * 7 2 1 10 10 C 1.53003 * 115.55097 * 84.52779 * 9 7 2 11 11 S 1.81406 * 109.46760 * 63.22741 * 10 9 7 12 12 O 1.42096 * 110.54432 * 68.93669 * 11 10 9 13 13 O 1.42105 * 110.54009 * 292.19031 * 11 10 9 14 14 N 1.65599 * 104.45038 * 180.56402 * 11 10 9 15 15 C 1.47720 * 134.43088 * 84.75990 * 14 11 10 16 16 C 1.53234 * 85.89671 * 155.88243 * 15 14 11 17 17 C 1.53434 * 114.99524 * 266.95434 * 16 15 14 18 18 C 1.55000 * 103.97630 * 227.74964 * 17 16 15 19 19 C 1.55308 * 102.00195 * 339.25998 * 18 17 16 20 20 O 1.42961 * 115.34726 * 139.96440 * 16 15 14 21 21 C 1.47714 * 134.43690 * 264.76505 * 14 11 10 22 22 H 1.09010 * 113.80123 * 318.36614 * 21 14 11 23 23 C 1.53002 * 113.80784 * 89.87001 * 21 14 11 24 24 C 1.53000 * 117.50070 * 230.22605 * 23 21 14 25 25 C 1.52994 * 117.49873 * 161.60224 * 23 21 14 26 26 C 1.53004 * 117.50191 * 230.20112 * 9 7 2 27 27 C 1.52997 * 117.50118 * 298.86093 * 9 7 2 28 28 H 0.97002 * 120.00077 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47449 * 303.22884 * 10 9 7 30 30 H 1.08998 * 109.47596 * 183.22144 * 10 9 7 31 31 H 1.09001 * 113.80690 * 41.63872 * 15 14 11 32 32 H 1.08997 * 113.91213 * 270.13948 * 15 14 11 33 33 H 1.08993 * 110.55484 * 346.40873 * 17 16 15 34 34 H 1.09001 * 110.55120 * 109.09042 * 17 16 15 35 35 H 1.08995 * 110.87271 * 97.33737 * 18 17 16 36 36 H 1.09008 * 110.87134 * 221.02677 * 18 17 16 37 37 H 1.08993 * 110.48258 * 277.90481 * 19 18 17 38 38 H 1.09001 * 110.74222 * 155.09950 * 19 18 17 39 39 H 1.09002 * 115.54783 * 15.93771 * 23 21 14 40 40 H 1.08994 * 117.49744 * 0.02562 * 24 23 21 41 41 H 1.08998 * 117.49416 * 145.01830 * 24 23 21 42 42 H 1.09003 * 117.49904 * 214.98517 * 25 23 21 43 43 H 1.09005 * 117.50234 * 0.02562 * 25 23 21 44 44 H 1.09002 * 117.49557 * 215.00577 * 26 9 7 45 45 H 1.09001 * 117.49397 * 0.02579 * 26 9 7 46 46 H 1.09004 * 117.50088 * 359.97438 * 27 9 7 47 47 H 1.09005 * 117.49984 * 144.97547 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4691 2.0624 -1.3998 5 1 1.4606 2.6446 0.7274 6 1 3.5602 1.4324 0.6723 7 6 2.0045 -1.1941 0.0005 8 1 1.4649 -2.1291 -0.0266 9 6 3.5110 -1.1943 0.0389 10 6 4.1357 -1.0824 1.4311 11 16 3.6759 -2.5330 2.4185 12 8 4.3102 -3.7005 1.9148 13 8 2.2838 -2.5209 2.7040 14 7 4.3964 -2.2782 3.8876 15 6 4.0219 -1.5348 5.1080 16 6 4.9671 -2.4886 5.8462 17 6 4.2980 -3.7377 6.4348 18 6 4.8402 -3.8044 7.8854 19 6 6.1284 -2.9423 7.7886 20 8 5.7674 -1.8883 6.8674 21 6 5.6706 -2.7031 4.5021 22 1 5.9302 -3.7428 4.3023 23 6 6.8300 -1.7368 4.2507 24 6 8.1394 -2.3265 3.7228 25 6 8.0481 -1.8405 5.1706 26 6 4.2440 -2.0482 -0.9978 27 6 4.2473 -0.5225 -1.1218 28 1 -0.4850 0.8401 -0.0004 29 1 3.7719 -0.1792 1.9210 30 1 5.2208 -1.0343 1.3397 31 1 2.9748 -1.6486 5.3885 32 1 4.3534 -0.4965 5.1120 33 1 3.2138 -3.6262 6.4364 34 1 4.5895 -4.6271 5.8761 35 1 4.1304 -3.3644 8.5858 36 1 5.0773 -4.8311 8.1645 37 1 6.9536 -3.5330 7.3910 38 1 6.3894 -2.5277 8.7623 39 1 6.5471 -0.7443 3.9001 40 1 8.1747 -3.4027 3.5541 41 1 8.7181 -1.7219 3.0244 42 1 8.5668 -0.9162 5.4249 43 1 8.0238 -2.5974 5.9547 44 1 5.1712 -2.5303 -0.6878 45 1 3.6365 -2.6094 -1.7078 46 1 3.6422 -0.0807 -1.9135 47 1 5.1767 -0.0005 -0.8936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562733707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:37 Heat of formation + Delta-G solvation = -19.070611 kcal Electronic energy + Delta-G solvation = -29766.981266 eV Core-core repulsion = 25852.393158 eV Total energy + Delta-G solvation = -3914.588108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.00364 -37.56508 -37.13102 -36.33782 -36.11543 -35.13544 -32.22743 -32.15955 -28.94261 -28.41228 -26.68390 -25.58594 -25.14202 -22.67420 -22.32085 -21.73735 -21.05299 -19.86899 -19.13911 -18.24666 -17.36150 -16.81340 -16.50177 -16.00401 -15.76455 -15.41714 -15.17348 -14.85807 -14.67562 -14.41129 -13.88302 -13.75415 -13.49147 -13.36041 -13.00205 -12.64230 -12.38298 -12.32285 -11.99743 -11.82470 -11.70254 -11.56765 -11.41156 -11.33839 -11.22865 -11.19926 -11.10885 -10.95248 -10.90262 -10.64680 -10.47190 -10.41121 -10.24674 -10.10438 -9.69692 -9.50035 -9.19681 -9.00611 -8.67578 -8.41096 -6.15423 -4.23159 0.86776 3.04991 3.21870 3.31953 3.34523 3.62599 3.66649 4.22319 4.29722 4.35318 4.42882 4.49396 4.52545 4.69827 4.78203 4.80314 4.85436 4.92417 4.97264 5.06152 5.12730 5.16926 5.36404 5.41302 5.43474 5.50482 5.57602 5.60375 5.61562 5.66803 5.73752 5.78012 5.80464 5.90845 5.93978 6.01449 6.04397 6.08617 6.20695 6.23575 6.40990 6.58105 6.63637 6.77758 6.86972 7.03684 7.59211 8.38044 8.89931 9.45217 10.96032 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.004168 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.162089 B = 6716.298615 C = 7157.380307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.089 3.911 3 Si 0.871 3.129 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.256 1.256 7 C -0.507 4.507 8 H 0.087 0.913 9 C 0.001 3.999 10 C -0.576 4.576 11 S 2.630 3.370 12 O -0.963 6.963 13 O -0.925 6.925 14 N -1.033 6.033 15 C 0.134 3.866 16 C 0.081 3.919 17 C -0.132 4.132 18 C -0.154 4.154 19 C 0.043 3.957 20 O -0.347 6.347 21 C 0.172 3.828 22 H 0.096 0.904 23 C -0.157 4.157 24 C -0.184 4.184 25 C -0.149 4.149 26 C -0.180 4.180 27 C -0.184 4.184 28 H 0.267 0.733 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.742 -3.974 15.455 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.116 4.116 3 Si 0.698 3.302 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.181 1.181 7 C -0.544 4.544 8 H 0.105 0.895 9 C -0.002 4.002 10 C -0.708 4.708 11 S 2.728 3.272 12 O -0.954 6.954 13 O -0.915 6.915 14 N -0.869 5.869 15 C 0.008 3.992 16 C 0.039 3.961 17 C -0.169 4.169 18 C -0.192 4.192 19 C -0.034 4.034 20 O -0.264 6.264 21 C 0.065 3.935 22 H 0.114 0.886 23 C -0.177 4.177 24 C -0.221 4.221 25 C -0.187 4.187 26 C -0.217 4.217 27 C -0.223 4.223 28 H 0.077 0.923 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.953 -4.438 15.071 21.689 hybrid contribution 0.703 1.596 -0.331 1.775 sum 15.656 -2.842 14.740 21.690 Atomic orbital electron populations 1.69894 1.06348 1.27238 1.48188 1.24932 0.94518 0.98873 0.93236 0.86972 0.80719 0.83576 0.78885 1.20073 1.21683 1.18057 1.20335 0.85478 0.95458 1.53115 0.89485 1.18881 0.94957 1.02457 0.83865 1.30349 1.07932 1.20404 1.12075 1.04648 0.74018 0.76564 0.71983 1.93495 1.77860 1.44989 1.79087 1.93604 1.29027 1.86892 1.81999 1.60818 1.30639 1.66004 1.29458 1.22814 0.99656 0.96262 0.80459 1.23595 0.91404 0.93925 0.87187 1.22653 1.01958 0.96964 0.95356 1.23232 0.97851 1.01074 0.97038 1.23654 0.96355 0.89397 0.93950 1.88840 1.69322 1.31398 1.36848 1.22107 0.83851 0.97561 0.89967 0.88646 1.22305 0.89048 1.00469 1.05868 1.23096 1.00054 1.01444 0.97503 1.22769 0.99908 1.03025 0.92960 1.23031 1.01495 0.92980 1.04183 1.22987 1.01202 0.95133 1.02959 0.92320 0.85870 0.87677 0.88786 0.89246 0.89346 0.89958 0.90276 0.90128 0.92190 0.88993 0.87194 0.88573 0.88696 0.88805 0.88787 0.90058 0.88632 0.88937 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.94 13.96 55.43 0.77 -26.16 16 2 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 3 Si 0.87 21.20 24.94 -169.99 -4.24 16.97 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.26 -5.76 5.66 56.52 0.32 -5.44 16 7 C -0.51 -14.33 8.36 -34.44 -0.29 -14.62 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 9 C 0.00 0.03 0.79 -155.66 -0.12 -0.10 16 10 C -0.58 -11.73 5.66 37.16 0.21 -11.52 16 11 S 2.63 54.06 5.73 -107.50 -0.62 53.44 16 12 O -0.96 -21.09 17.98 -57.54 -1.03 -22.12 16 13 O -0.92 -22.79 17.28 -57.54 -0.99 -23.79 16 14 N -1.03 -16.22 3.79 -115.06 -0.44 -16.65 16 15 C 0.13 1.78 8.22 -3.26 -0.03 1.75 16 16 C 0.08 0.94 1.41 -90.28 -0.13 0.81 16 17 C -0.13 -1.33 6.45 -25.45 -0.16 -1.50 16 18 C -0.15 -1.15 7.19 -24.45 -0.18 -1.32 16 19 C 0.04 0.33 7.33 38.38 0.28 0.61 16 20 O -0.35 -3.65 9.34 -35.23 -0.33 -3.98 16 21 C 0.17 2.22 4.14 -67.15 -0.28 1.94 16 22 H 0.10 1.21 7.80 -51.92 -0.40 0.81 16 23 C -0.16 -1.82 5.28 -90.62 -0.48 -2.30 16 24 C -0.18 -1.87 10.22 -26.73 -0.27 -2.14 16 25 C -0.15 -1.39 9.01 -26.73 -0.24 -1.63 16 26 C -0.18 -3.77 9.96 -26.69 -0.27 -4.03 16 27 C -0.18 -3.88 7.59 -26.70 -0.20 -4.08 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.12 2.48 6.57 -51.92 -0.34 2.13 16 30 H 0.10 1.79 8.10 -51.93 -0.42 1.37 16 31 H 0.09 1.23 7.85 -51.93 -0.41 0.82 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.09 0.92 7.75 -51.93 -0.40 0.52 16 34 H 0.08 0.82 7.74 -51.93 -0.40 0.42 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.06 0.41 6.96 -51.93 -0.36 0.04 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.10 0.95 8.13 -51.93 -0.42 0.52 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.80 6.21 -51.93 -0.32 0.48 16 44 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 45 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 46 H 0.09 2.01 7.33 -51.93 -0.38 1.63 16 47 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -34.66 382.20 -11.10 -45.75 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.73 Total: 6.44 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: -2.25 Total: -35.66 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.34 Total: -42.81 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -2.36 Total: -49.89 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.24 Total: 16.97 kcal Atomic # 16 Polarization: 54.06 SS G_CDS: -0.62 Total: 53.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.66 -11.10 -45.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562733707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.684 kcal (2) G-P(sol) polarization free energy of solvation -34.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds