Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48505 * 109.47142 * 271.29864 * 3 2 1 5 5 H 1.48498 * 109.47542 * 31.30169 * 3 2 1 6 6 H 1.48506 * 109.46952 * 151.30187 * 3 2 1 7 7 C 1.37876 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00136 * 1.69091 * 7 2 1 9 9 C 1.50697 * 119.99754 * 181.68355 * 7 2 1 10 10 C 1.53003 * 115.55097 * 84.52779 * 9 7 2 11 11 S 1.81406 * 109.46760 * 63.22741 * 10 9 7 12 12 O 1.42096 * 110.54432 * 68.93669 * 11 10 9 13 13 O 1.42105 * 110.54009 * 292.19031 * 11 10 9 14 14 N 1.65599 * 104.45038 * 180.56402 * 11 10 9 15 15 C 1.47720 * 134.43088 * 84.75990 * 14 11 10 16 16 C 1.53234 * 85.89671 * 155.88243 * 15 14 11 17 17 C 1.53434 * 114.99524 * 266.95434 * 16 15 14 18 18 C 1.55000 * 103.97630 * 227.74964 * 17 16 15 19 19 C 1.55308 * 102.00195 * 339.25998 * 18 17 16 20 20 O 1.42961 * 115.34726 * 139.96440 * 16 15 14 21 21 C 1.47714 * 134.43690 * 264.76505 * 14 11 10 22 22 H 1.09010 * 113.80123 * 318.36614 * 21 14 11 23 23 C 1.53002 * 113.80784 * 89.87001 * 21 14 11 24 24 C 1.53000 * 117.50070 * 230.22605 * 23 21 14 25 25 C 1.52994 * 117.49873 * 161.60224 * 23 21 14 26 26 C 1.53004 * 117.50191 * 230.20112 * 9 7 2 27 27 C 1.52997 * 117.50118 * 298.86093 * 9 7 2 28 28 H 0.97002 * 120.00077 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47449 * 303.22884 * 10 9 7 30 30 H 1.08998 * 109.47596 * 183.22144 * 10 9 7 31 31 H 1.09001 * 113.80690 * 41.63872 * 15 14 11 32 32 H 1.08997 * 113.91213 * 270.13948 * 15 14 11 33 33 H 1.08993 * 110.55484 * 346.40873 * 17 16 15 34 34 H 1.09001 * 110.55120 * 109.09042 * 17 16 15 35 35 H 1.08995 * 110.87271 * 97.33737 * 18 17 16 36 36 H 1.09008 * 110.87134 * 221.02677 * 18 17 16 37 37 H 1.08993 * 110.48258 * 277.90481 * 19 18 17 38 38 H 1.09001 * 110.74222 * 155.09950 * 19 18 17 39 39 H 1.09002 * 115.54783 * 15.93771 * 23 21 14 40 40 H 1.08994 * 117.49744 * 0.02562 * 24 23 21 41 41 H 1.08998 * 117.49416 * 145.01830 * 24 23 21 42 42 H 1.09003 * 117.49904 * 214.98517 * 25 23 21 43 43 H 1.09005 * 117.50234 * 0.02562 * 25 23 21 44 44 H 1.09002 * 117.49557 * 215.00577 * 26 9 7 45 45 H 1.09001 * 117.49397 * 0.02579 * 26 9 7 46 46 H 1.09004 * 117.50088 * 359.97438 * 27 9 7 47 47 H 1.09005 * 117.49984 * 144.97547 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4691 2.0624 -1.3998 5 1 1.4606 2.6446 0.7274 6 1 3.5602 1.4324 0.6723 7 6 2.0045 -1.1941 0.0005 8 1 1.4649 -2.1291 -0.0266 9 6 3.5110 -1.1943 0.0389 10 6 4.1357 -1.0824 1.4311 11 16 3.6759 -2.5330 2.4185 12 8 4.3102 -3.7005 1.9148 13 8 2.2838 -2.5209 2.7040 14 7 4.3964 -2.2782 3.8876 15 6 4.0219 -1.5348 5.1080 16 6 4.9671 -2.4886 5.8462 17 6 4.2980 -3.7377 6.4348 18 6 4.8402 -3.8044 7.8854 19 6 6.1284 -2.9423 7.7886 20 8 5.7674 -1.8883 6.8674 21 6 5.6706 -2.7031 4.5021 22 1 5.9302 -3.7428 4.3023 23 6 6.8300 -1.7368 4.2507 24 6 8.1394 -2.3265 3.7228 25 6 8.0481 -1.8405 5.1706 26 6 4.2440 -2.0482 -0.9978 27 6 4.2473 -0.5225 -1.1218 28 1 -0.4850 0.8401 -0.0004 29 1 3.7719 -0.1792 1.9210 30 1 5.2208 -1.0343 1.3397 31 1 2.9748 -1.6486 5.3885 32 1 4.3534 -0.4965 5.1120 33 1 3.2138 -3.6262 6.4364 34 1 4.5895 -4.6271 5.8761 35 1 4.1304 -3.3644 8.5858 36 1 5.0773 -4.8311 8.1645 37 1 6.9536 -3.5330 7.3910 38 1 6.3894 -2.5277 8.7623 39 1 6.5471 -0.7443 3.9001 40 1 8.1747 -3.4027 3.5541 41 1 8.7181 -1.7219 3.0244 42 1 8.5668 -0.9162 5.4249 43 1 8.0238 -2.5974 5.9547 44 1 5.1712 -2.5303 -0.6878 45 1 3.6365 -2.6094 -1.7078 46 1 3.6422 -0.0807 -1.9135 47 1 5.1767 -0.0005 -0.8936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562733707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = -43.992629 kcal Electronic energy + Delta-G solvation = -29768.061966 eV Core-core repulsion = 25852.393158 eV Total energy + Delta-G solvation = -3915.668808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.91186 -38.89595 -38.38130 -38.02896 -37.02828 -36.85760 -34.32332 -32.94730 -30.24272 -29.72200 -27.69076 -27.61260 -26.15321 -23.40901 -23.38268 -23.04089 -21.84749 -21.34460 -20.62361 -19.50685 -18.79079 -18.56097 -17.56014 -17.22561 -17.02121 -16.83640 -16.40882 -16.10148 -15.98332 -15.61258 -15.31306 -14.88702 -14.69941 -14.56458 -14.43697 -14.22763 -13.98735 -13.39638 -13.25315 -13.04982 -13.02309 -12.78772 -12.75761 -12.69478 -12.57837 -12.44603 -12.28548 -12.17918 -12.12545 -12.04475 -11.83695 -11.68038 -11.65068 -11.23041 -11.07285 -10.99292 -10.73208 -10.45213 -10.33786 -9.95431 -8.33776 -6.47303 -0.70473 1.32282 1.32988 1.46515 1.69308 2.32436 2.78953 2.82152 2.88005 2.96423 3.10384 3.13529 3.37295 3.48189 3.66564 3.76431 3.80230 4.00581 4.08834 4.10418 4.15500 4.18099 4.25921 4.32156 4.35483 4.36628 4.54226 4.55938 4.61546 4.71489 4.76108 4.79678 4.88214 4.89101 4.92154 4.99533 4.99993 5.08709 5.11451 5.15456 5.21193 5.27999 5.36646 5.39338 5.51455 5.57527 6.00859 6.17644 6.63755 7.24982 8.82637 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.004168 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.162089 B = 6716.298615 C = 7157.380307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.027 3.973 3 Si 0.932 3.068 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.219 1.219 7 C -0.510 4.510 8 H 0.028 0.972 9 C -0.035 4.035 10 C -0.571 4.571 11 S 2.637 3.363 12 O -0.986 6.986 13 O -0.983 6.983 14 N -1.034 6.034 15 C 0.122 3.878 16 C 0.095 3.905 17 C -0.141 4.141 18 C -0.146 4.146 19 C 0.038 3.962 20 O -0.353 6.353 21 C 0.171 3.829 22 H 0.093 0.907 23 C -0.178 4.178 24 C -0.185 4.185 25 C -0.130 4.130 26 C -0.175 4.175 27 C -0.166 4.166 28 H 0.269 0.731 29 H 0.127 0.873 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.162 -2.573 17.003 26.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.172 4.172 3 Si 0.754 3.246 4 H -0.186 1.186 5 H -0.219 1.219 6 H -0.141 1.141 7 C -0.547 4.547 8 H 0.047 0.953 9 C -0.037 4.037 10 C -0.703 4.703 11 S 2.737 3.263 12 O -0.976 6.976 13 O -0.974 6.974 14 N -0.873 5.873 15 C -0.003 4.003 16 C 0.052 3.948 17 C -0.179 4.179 18 C -0.184 4.184 19 C -0.038 4.038 20 O -0.271 6.271 21 C 0.065 3.935 22 H 0.111 0.889 23 C -0.198 4.198 24 C -0.222 4.222 25 C -0.168 4.168 26 C -0.212 4.212 27 C -0.204 4.204 28 H 0.078 0.922 29 H 0.145 0.855 30 H 0.166 0.834 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.128 0.872 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 19.399 -3.073 16.620 25.729 hybrid contribution -0.676 1.026 -0.755 1.442 sum 18.723 -2.047 15.865 24.626 Atomic orbital electron populations 1.70066 1.08674 1.28403 1.50658 1.25918 0.95271 1.03259 0.92738 0.86001 0.80807 0.77885 0.79922 1.18637 1.21945 1.14071 1.20415 0.88608 0.93286 1.52424 0.95335 1.18805 0.92393 1.06181 0.86362 1.30216 1.10342 1.19963 1.09793 1.04007 0.72955 0.76626 0.72753 1.93447 1.77779 1.46313 1.80101 1.93536 1.32862 1.87711 1.83258 1.60365 1.32197 1.66540 1.28178 1.23093 1.00079 0.97482 0.79660 1.23298 0.90772 0.93555 0.87192 1.22731 1.01410 0.96354 0.97436 1.23226 0.97781 1.02362 0.94981 1.23908 0.96543 0.88994 0.94339 1.88822 1.69011 1.32413 1.36807 1.22373 0.83237 0.97951 0.89982 0.88878 1.22292 0.89153 1.00040 1.08268 1.23191 0.98911 1.01611 0.98453 1.22845 0.97628 1.03611 0.92706 1.23118 1.01891 0.93612 1.02603 1.23088 1.01796 0.95106 1.00446 0.92241 0.85477 0.83379 0.89524 0.87724 0.90449 0.90176 0.89859 0.88282 0.90957 0.86904 0.87446 0.88586 0.87816 0.87663 0.87908 0.87193 0.89820 0.89872 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.45 13.96 21.45 0.30 -60.15 16 2 C 0.03 1.61 5.47 84.65 0.46 2.07 16 3 Si 0.93 43.00 24.94 68.60 1.71 44.71 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.22 -8.67 5.66 99.48 0.56 -8.11 16 7 C -0.51 -30.02 8.36 25.60 0.21 -29.80 16 8 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 9 C -0.03 -1.60 0.79 -52.93 -0.04 -1.64 16 10 C -0.57 -22.12 5.66 71.98 0.41 -21.71 16 11 S 2.64 109.91 5.73 -56.49 -0.32 109.59 16 12 O -0.99 -43.58 17.98 -127.65 -2.30 -45.88 16 13 O -0.98 -51.39 17.28 -127.65 -2.21 -53.60 16 14 N -1.03 -31.96 3.79 -523.34 -1.98 -33.94 16 15 C 0.12 3.18 8.22 86.22 0.71 3.89 16 16 C 0.09 2.05 1.41 -10.45 -0.01 2.03 16 17 C -0.14 -2.74 6.45 31.42 0.20 -2.54 16 18 C -0.15 -1.81 7.19 32.07 0.23 -1.58 16 19 C 0.04 0.45 7.33 72.77 0.53 0.98 16 20 O -0.35 -6.44 9.34 -148.98 -1.39 -7.83 16 21 C 0.17 4.12 4.14 44.83 0.19 4.30 16 22 H 0.09 2.25 7.80 -2.38 -0.02 2.24 16 23 C -0.18 -3.60 5.28 -10.80 -0.06 -3.66 16 24 C -0.18 -3.14 10.22 30.59 0.31 -2.83 16 25 C -0.13 -1.95 9.01 30.59 0.28 -1.68 16 26 C -0.18 -7.05 9.96 30.62 0.30 -6.74 16 27 C -0.17 -6.42 7.59 30.62 0.23 -6.19 16 28 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 29 H 0.13 4.81 6.57 -2.39 -0.02 4.79 16 30 H 0.15 4.39 8.10 -2.39 -0.02 4.37 16 31 H 0.09 2.34 7.85 -2.39 -0.02 2.32 16 32 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.08 1.65 7.75 -2.39 -0.02 1.63 16 34 H 0.08 1.56 7.74 -2.39 -0.02 1.54 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.07 0.70 6.96 -2.39 -0.02 0.68 16 38 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.10 1.63 8.13 -2.39 -0.02 1.61 16 41 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.10 1.35 6.21 -2.38 -0.01 1.34 16 44 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 45 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 46 H 0.08 3.39 7.33 -2.39 -0.02 3.37 16 47 H 0.12 3.57 8.14 -2.38 -0.02 3.55 16 Total: -1.00 -80.41 382.20 -1.42 -81.83 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.81 Total: 30.35 kcal Atomic # 6 Polarization: -69.05 SS G_CDS: 3.96 Total: -65.09 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -1.68 Total: -94.08 kcal Atomic # 8 Polarization: -101.41 SS G_CDS: -5.89 Total: -107.30 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.71 Total: 44.71 kcal Atomic # 16 Polarization: 109.91 SS G_CDS: -0.32 Total: 109.59 kcal Total: -80.41 -1.42 -81.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562733707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.837 kcal (2) G-P(sol) polarization free energy of solvation -80.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds