Wall clock time and date at job start Sat Apr 11 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00184 * 2 1 4 4 H 1.48493 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46636 * 299.99503 * 3 2 1 6 6 H 1.48494 * 109.46961 * 59.99325 * 3 2 1 7 7 C 1.37877 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46714 * 179.97438 * 9 7 2 11 11 C 1.53048 * 109.45781 * 175.00243 * 10 9 7 12 12 C 1.53191 * 109.31406 * 181.37577 * 11 10 9 13 13 N 1.46929 * 108.77275 * 305.36661 * 12 11 10 14 14 C 1.34781 * 120.62544 * 233.58591 * 13 12 11 15 15 O 1.21582 * 120.00311 * 9.67116 * 14 13 12 16 16 C 1.47603 * 119.99577 * 189.66488 * 14 13 12 17 17 N 1.32564 * 120.90017 * 7.45695 * 16 14 13 18 18 N 1.28018 * 123.10889 * 179.97438 * 17 16 14 19 19 C 1.32283 * 124.12020 * 359.97438 * 18 17 16 20 20 O 1.35284 * 120.22962 * 180.02562 * 19 18 17 21 21 C 1.41111 * 119.54378 * 0.02562 * 19 18 17 22 22 C 1.39959 * 122.87613 * 179.97438 * 21 19 18 23 23 C 1.36395 * 119.35786 * 180.02562 * 22 21 19 24 24 C 1.39262 * 121.07686 * 0.02562 * 23 22 21 25 25 C 1.36484 * 121.02299 * 359.97438 * 24 23 22 26 26 C 1.39628 * 119.34255 * 0.02562 * 25 24 23 27 27 C 1.46921 * 118.74099 * 53.85595 * 13 12 11 28 28 C 1.53034 * 109.45359 * 295.06287 * 10 9 7 29 29 H 0.97004 * 119.99274 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46788 * 60.00171 * 9 7 2 31 31 H 1.08998 * 109.47550 * 300.00017 * 9 7 2 32 32 H 1.09000 * 109.46365 * 55.03385 * 10 9 7 33 33 H 1.09003 * 109.49737 * 61.42005 * 11 10 9 34 34 H 1.09006 * 109.52197 * 301.34369 * 11 10 9 35 35 H 1.08998 * 109.58844 * 185.57963 * 12 11 10 36 36 H 1.09004 * 109.70311 * 65.21898 * 12 11 10 37 37 H 0.96698 * 114.00435 * 269.98617 * 20 19 18 38 38 H 1.08000 * 120.32444 * 0.04743 * 22 21 19 39 39 H 1.07999 * 119.45420 * 180.27727 * 23 22 21 40 40 H 1.08000 * 119.48849 * 180.02562 * 24 23 22 41 41 H 1.07996 * 120.32601 * 180.02562 * 25 24 23 42 42 H 1.09007 * 109.58517 * 65.93133 * 27 13 12 43 43 H 1.09007 * 109.58656 * 186.35172 * 27 13 12 44 44 H 1.08996 * 109.49765 * 298.57752 * 28 10 9 45 45 H 1.09005 * 109.49950 * 58.66831 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4838 -4.9838 0.1262 12 6 2.4842 -6.1435 0.1605 13 7 3.3501 -6.0561 -1.0233 14 6 3.4918 -7.1112 -1.8498 15 8 2.7722 -8.0831 -1.7237 16 6 4.5205 -7.0868 -2.9080 17 7 5.4092 -6.1052 -2.9710 18 7 6.3189 -6.0422 -3.8695 19 6 6.4776 -6.9389 -4.8290 20 8 7.4680 -6.7945 -5.7392 21 6 5.6066 -8.0470 -4.8967 22 6 5.7106 -9.0360 -5.8815 23 6 4.8292 -10.0770 -5.8796 24 6 3.8291 -10.1703 -4.9150 25 6 3.7005 -9.2227 -3.9411 26 6 4.5868 -8.1441 -3.9147 27 6 4.0634 -4.7986 -1.2856 28 6 3.0410 -3.6522 -1.3066 29 1 -0.4849 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6239 -2.5567 0.8902 32 1 2.9289 -3.5554 0.8427 33 1 0.8179 -5.1027 -0.7285 34 1 0.8985 -4.9809 1.0458 35 1 1.9456 -7.0910 0.1501 36 1 3.0917 -6.0782 1.0632 37 1 7.2105 -6.2922 -6.5244 38 1 6.4815 -8.9758 -6.6355 39 1 4.9109 -10.8434 -6.6361 40 1 3.1452 -11.0058 -4.9374 41 1 2.9211 -9.3065 -3.1983 42 1 4.7968 -4.6235 -0.4984 43 1 4.5671 -4.8587 -2.2504 44 1 2.3605 -3.7837 -2.1478 45 1 3.5644 -2.7013 -1.4068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572162600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:48 Heat of formation + Delta-G solvation = 11.476973 kcal Electronic energy + Delta-G solvation = -29325.001198 eV Core-core repulsion = 25308.586533 eV Total energy + Delta-G solvation = -4016.414666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.82924 -39.95331 -38.58636 -37.99412 -37.35825 -34.10156 -32.85812 -32.14663 -32.01249 -31.04935 -30.20923 -28.10951 -26.05370 -24.71072 -24.46043 -23.28590 -22.64908 -21.89798 -20.41839 -19.67472 -19.29612 -18.79145 -18.01788 -16.92258 -16.43016 -16.32441 -16.07163 -15.50306 -15.21644 -14.96618 -14.55864 -14.46718 -14.18228 -14.02370 -13.50356 -13.48356 -13.05582 -12.99121 -12.87240 -12.69698 -12.58911 -12.38695 -11.94064 -11.80476 -11.43735 -11.16195 -10.93068 -10.74109 -10.69490 -10.61829 -10.43167 -10.09553 -9.86616 -9.79701 -9.77178 -9.44956 -9.09821 -8.93259 -8.84806 -8.38291 -8.31774 -5.97615 -3.99089 -0.49152 0.17750 1.13259 2.14736 2.75325 2.83514 2.93978 3.32466 3.40392 3.44384 3.50011 3.64831 3.94265 4.09846 4.27891 4.43476 4.48045 4.61248 4.76451 4.89823 5.12344 5.19666 5.33020 5.37999 5.45990 5.48078 5.51016 5.65800 5.67091 5.73747 5.87068 5.92466 5.99277 6.06834 6.27396 6.34292 6.38996 6.43111 6.58384 6.70946 6.84805 7.01080 7.04554 7.16243 7.42167 7.69990 7.84264 7.96180 8.02589 8.34775 8.45449 9.07817 9.64779 11.13731 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.002732 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.934427 B =10247.891584 C =11440.997317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.083 4.083 11 C -0.128 4.128 12 C 0.110 3.890 13 N -0.574 5.574 14 C 0.575 3.425 15 O -0.539 6.539 16 C 0.065 3.935 17 N -0.189 5.189 18 N -0.292 5.292 19 C 0.323 3.677 20 O -0.468 6.468 21 C -0.104 4.104 22 C -0.086 4.086 23 C -0.100 4.100 24 C -0.096 4.096 25 C -0.088 4.088 26 C -0.033 4.033 27 C 0.073 3.927 28 C -0.117 4.117 29 H 0.259 0.741 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.411 0.589 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.173 0.827 42 H 0.070 0.930 43 H 0.129 0.871 44 H 0.055 0.945 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.641 -21.411 -12.806 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.102 4.102 11 C -0.166 4.166 12 C -0.012 4.012 13 N -0.305 5.305 14 C 0.361 3.639 15 O -0.417 6.417 16 C -0.094 4.094 17 N -0.026 5.026 18 N -0.134 5.134 19 C 0.126 3.874 20 O -0.275 6.275 21 C -0.112 4.112 22 C -0.106 4.106 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.107 4.107 26 C -0.040 4.040 27 C -0.050 4.050 28 C -0.156 4.156 29 H 0.068 0.932 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.271 0.729 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.190 0.810 42 H 0.088 0.912 43 H 0.146 0.854 44 H 0.074 0.926 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.092 -20.633 -11.707 26.188 hybrid contribution -0.187 0.151 -1.013 1.041 sum 10.905 -20.482 -12.720 26.462 Atomic orbital electron populations 1.69981 1.06054 1.26362 1.51211 1.25025 0.94797 0.99195 0.95518 0.86595 0.80231 0.84054 0.77500 1.19659 1.21138 1.21128 1.21295 0.93039 0.90921 1.49960 0.92455 1.19128 0.93602 0.91087 0.97134 1.21229 0.98014 0.94500 0.96408 1.22024 0.97504 0.94728 1.02374 1.21833 0.92680 1.00711 0.85972 1.48109 1.44920 1.12653 1.24773 1.17285 0.82306 0.83547 0.80807 1.90634 1.45183 1.34166 1.71684 1.24333 0.96898 0.92371 0.95834 1.73032 0.98690 1.17306 1.13610 1.72465 1.14439 1.24640 1.01838 1.21050 0.85794 0.89874 0.90653 1.84620 1.34197 1.76836 1.31829 1.18998 0.96063 0.97994 0.98154 1.20888 0.99309 0.93038 0.97389 1.21177 0.94328 0.97886 0.98557 1.21312 0.97579 0.98924 0.93682 1.21833 0.98462 0.91443 0.98919 1.19468 0.95672 0.95681 0.93205 1.23126 0.94863 0.81885 1.05083 1.21995 0.97450 0.97511 0.98600 0.93161 0.96695 0.96611 0.92235 0.91978 0.90933 0.89412 0.91154 0.72891 0.83951 0.84745 0.84550 0.81004 0.91163 0.85431 0.92628 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.11 8.39 -34.44 -0.29 -14.40 16 8 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 10 C -0.08 -1.63 2.10 -90.58 -0.19 -1.82 16 11 C -0.13 -2.15 5.36 -26.61 -0.14 -2.30 16 12 C 0.11 1.62 6.44 -3.71 -0.02 1.59 16 13 N -0.57 -8.89 2.97 -173.70 -0.52 -9.40 16 14 C 0.58 8.85 7.63 -12.44 -0.09 8.75 16 15 O -0.54 -8.65 13.24 5.29 0.07 -8.58 16 16 C 0.06 0.92 6.87 -80.56 -0.55 0.37 16 17 N -0.19 -2.78 7.33 34.49 0.25 -2.53 16 18 N -0.29 -4.06 11.40 30.80 0.35 -3.71 16 19 C 0.32 3.56 7.91 -16.27 -0.13 3.43 16 20 O -0.47 -3.69 12.94 -17.54 -0.23 -3.92 16 21 C -0.10 -1.08 5.76 -106.76 -0.61 -1.70 16 22 C -0.09 -0.62 9.63 -39.60 -0.38 -1.01 16 23 C -0.10 -0.62 9.95 -39.87 -0.40 -1.02 16 24 C -0.10 -0.71 9.96 -39.83 -0.40 -1.11 16 25 C -0.09 -0.93 9.32 -39.70 -0.37 -1.30 16 26 C -0.03 -0.40 5.90 -104.81 -0.62 -1.02 16 27 C 0.07 1.14 5.91 -3.49 -0.02 1.12 16 28 C -0.12 -2.16 5.20 -26.39 -0.14 -2.30 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.25 7.01 -51.93 -0.36 0.89 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.41 1.08 9.06 45.56 0.41 1.49 16 38 H 0.14 0.67 7.75 -52.49 -0.41 0.26 16 39 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 40 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.17 2.01 5.32 -52.49 -0.28 1.73 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.13 2.01 4.11 -118.80 -0.49 1.52 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.09 1.69 6.91 -51.93 -0.36 1.34 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -33.67 365.03 -8.65 -42.31 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.22 Total: 0.54 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -4.58 Total: -10.66 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.83 Total: -41.75 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.16 Total: -12.50 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.67 -8.65 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572162600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.791 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds