Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00184 * 2 1 4 4 H 1.48493 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46636 * 299.99503 * 3 2 1 6 6 H 1.48494 * 109.46961 * 59.99325 * 3 2 1 7 7 C 1.37877 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99687 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46714 * 179.97438 * 9 7 2 11 11 C 1.53048 * 109.45781 * 175.00243 * 10 9 7 12 12 C 1.53191 * 109.31406 * 181.37577 * 11 10 9 13 13 N 1.46929 * 108.77275 * 305.36661 * 12 11 10 14 14 C 1.34781 * 120.62544 * 233.58591 * 13 12 11 15 15 O 1.21582 * 120.00311 * 9.67116 * 14 13 12 16 16 C 1.47603 * 119.99577 * 189.66488 * 14 13 12 17 17 N 1.32564 * 120.90017 * 7.45695 * 16 14 13 18 18 N 1.28018 * 123.10889 * 179.97438 * 17 16 14 19 19 C 1.32283 * 124.12020 * 359.97438 * 18 17 16 20 20 O 1.35284 * 120.22962 * 180.02562 * 19 18 17 21 21 C 1.41111 * 119.54378 * 0.02562 * 19 18 17 22 22 C 1.39959 * 122.87613 * 179.97438 * 21 19 18 23 23 C 1.36395 * 119.35786 * 180.02562 * 22 21 19 24 24 C 1.39262 * 121.07686 * 0.02562 * 23 22 21 25 25 C 1.36484 * 121.02299 * 359.97438 * 24 23 22 26 26 C 1.39628 * 119.34255 * 0.02562 * 25 24 23 27 27 C 1.46921 * 118.74099 * 53.85595 * 13 12 11 28 28 C 1.53034 * 109.45359 * 295.06287 * 10 9 7 29 29 H 0.97004 * 119.99274 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46788 * 60.00171 * 9 7 2 31 31 H 1.08998 * 109.47550 * 300.00017 * 9 7 2 32 32 H 1.09000 * 109.46365 * 55.03385 * 10 9 7 33 33 H 1.09003 * 109.49737 * 61.42005 * 11 10 9 34 34 H 1.09006 * 109.52197 * 301.34369 * 11 10 9 35 35 H 1.08998 * 109.58844 * 185.57963 * 12 11 10 36 36 H 1.09004 * 109.70311 * 65.21898 * 12 11 10 37 37 H 0.96698 * 114.00435 * 269.98617 * 20 19 18 38 38 H 1.08000 * 120.32444 * 0.04743 * 22 21 19 39 39 H 1.07999 * 119.45420 * 180.27727 * 23 22 21 40 40 H 1.08000 * 119.48849 * 180.02562 * 24 23 22 41 41 H 1.07996 * 120.32601 * 180.02562 * 25 24 23 42 42 H 1.09007 * 109.58517 * 65.93133 * 27 13 12 43 43 H 1.09007 * 109.58656 * 186.35172 * 27 13 12 44 44 H 1.08996 * 109.49765 * 298.57752 * 28 10 9 45 45 H 1.09005 * 109.49950 * 58.66831 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4838 -4.9838 0.1262 12 6 2.4842 -6.1435 0.1605 13 7 3.3501 -6.0561 -1.0233 14 6 3.4918 -7.1112 -1.8498 15 8 2.7722 -8.0831 -1.7237 16 6 4.5205 -7.0868 -2.9080 17 7 5.4092 -6.1052 -2.9710 18 7 6.3189 -6.0422 -3.8695 19 6 6.4776 -6.9389 -4.8290 20 8 7.4680 -6.7945 -5.7392 21 6 5.6066 -8.0470 -4.8967 22 6 5.7106 -9.0360 -5.8815 23 6 4.8292 -10.0770 -5.8796 24 6 3.8291 -10.1703 -4.9150 25 6 3.7005 -9.2227 -3.9411 26 6 4.5868 -8.1441 -3.9147 27 6 4.0634 -4.7986 -1.2856 28 6 3.0410 -3.6522 -1.3066 29 1 -0.4849 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6239 -2.5567 0.8902 32 1 2.9289 -3.5554 0.8427 33 1 0.8179 -5.1027 -0.7285 34 1 0.8985 -4.9809 1.0458 35 1 1.9456 -7.0910 0.1501 36 1 3.0917 -6.0782 1.0632 37 1 7.2105 -6.2922 -6.5244 38 1 6.4815 -8.9758 -6.6355 39 1 4.9109 -10.8434 -6.6361 40 1 3.1452 -11.0058 -4.9374 41 1 2.9211 -9.3065 -3.1983 42 1 4.7968 -4.6235 -0.4984 43 1 4.5671 -4.8587 -2.2504 44 1 2.3605 -3.7837 -2.1478 45 1 3.5644 -2.7013 -1.4068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572162600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = -12.440675 kcal Electronic energy + Delta-G solvation = -29326.038345 eV Core-core repulsion = 25308.586533 eV Total energy + Delta-G solvation = -4017.451813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.68676 -41.09616 -39.33594 -38.85230 -38.60564 -35.77445 -34.18822 -33.53576 -32.72498 -32.17145 -31.25746 -29.85830 -27.23404 -25.95824 -25.45755 -24.39365 -23.94630 -23.20954 -21.73399 -20.69876 -20.28358 -19.83557 -18.81562 -18.41671 -17.84938 -17.30470 -17.26512 -16.58198 -16.47506 -15.93525 -15.79099 -15.44600 -15.30135 -15.09469 -14.85264 -14.72838 -14.52759 -14.28286 -14.06004 -13.73009 -13.50919 -13.42360 -13.14212 -13.00236 -12.88479 -12.61618 -12.55262 -12.50726 -12.25956 -12.05558 -11.73397 -11.45607 -11.36720 -11.17653 -10.84751 -10.80631 -10.55448 -10.48553 -10.32055 -9.77367 -9.53361 -8.16494 -6.25445 -1.30831 -0.56877 0.41974 1.24519 1.40228 1.41122 1.54023 1.66616 1.94347 2.14240 2.42867 2.68698 2.72810 3.07479 3.17191 3.38259 3.52466 3.67264 3.93276 4.03828 4.06890 4.08761 4.16567 4.21570 4.24013 4.41315 4.46379 4.56613 4.65556 4.66052 4.87498 4.90153 4.95644 5.01140 5.05026 5.17454 5.24320 5.30165 5.33445 5.34463 5.39995 5.53608 5.59116 5.69068 5.81687 5.89999 6.20260 6.30633 6.37952 6.79642 6.91199 7.43050 7.43399 8.95685 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.002732 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.934427 B =10247.891584 C =11440.997317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.959 3.041 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.526 4.526 8 H 0.064 0.936 9 C 0.034 3.966 10 C -0.075 4.075 11 C -0.120 4.120 12 C 0.116 3.884 13 N -0.582 5.582 14 C 0.576 3.424 15 O -0.550 6.550 16 C 0.040 3.960 17 N -0.205 5.205 18 N -0.333 5.333 19 C 0.342 3.658 20 O -0.465 6.465 21 C -0.120 4.120 22 C -0.076 4.076 23 C -0.091 4.091 24 C -0.077 4.077 25 C -0.116 4.116 26 C -0.050 4.050 27 C 0.086 3.914 28 C -0.110 4.110 29 H 0.261 0.739 30 H -0.016 1.016 31 H -0.010 1.010 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.435 0.565 38 H 0.175 0.825 39 H 0.178 0.822 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.079 0.921 43 H 0.134 0.866 44 H 0.040 0.960 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.864 -23.486 -14.912 30.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.564 4.564 8 H 0.082 0.918 9 C -0.003 4.003 10 C -0.093 4.093 11 C -0.158 4.158 12 C -0.005 4.005 13 N -0.312 5.312 14 C 0.362 3.638 15 O -0.429 6.429 16 C -0.120 4.120 17 N -0.042 5.042 18 N -0.175 5.175 19 C 0.145 3.855 20 O -0.275 6.275 21 C -0.127 4.127 22 C -0.095 4.095 23 C -0.110 4.110 24 C -0.096 4.096 25 C -0.136 4.136 26 C -0.057 4.057 27 C -0.036 4.036 28 C -0.148 4.148 29 H 0.070 0.930 30 H 0.002 0.998 31 H 0.009 0.991 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.300 0.700 38 H 0.192 0.808 39 H 0.195 0.805 40 H 0.183 0.817 41 H 0.171 0.829 42 H 0.097 0.903 43 H 0.150 0.850 44 H 0.059 0.941 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.332 -22.712 -13.842 29.752 hybrid contribution -0.865 0.642 -0.544 1.207 sum 12.467 -22.070 -14.386 29.145 Atomic orbital electron populations 1.70118 1.07803 1.27410 1.52453 1.25949 0.95664 1.03206 0.95200 0.85484 0.79347 0.79244 0.77533 1.18350 1.20761 1.20625 1.21700 0.93552 0.91950 1.49175 0.91786 1.19013 0.93977 0.93012 0.94346 1.21073 0.97068 0.93881 0.97305 1.21904 0.97663 0.94100 1.02173 1.21797 0.92398 0.99729 0.86620 1.48138 1.45227 1.12682 1.25177 1.17504 0.82349 0.83171 0.80801 1.90621 1.45731 1.34471 1.72036 1.24181 0.97162 0.93858 0.96777 1.72785 0.99114 1.17881 1.14405 1.72342 1.15411 1.26470 1.03306 1.21130 0.85198 0.89139 0.89989 1.84572 1.33266 1.77346 1.32360 1.19181 0.95731 0.98908 0.98915 1.21333 0.99816 0.91828 0.96543 1.21669 0.92685 0.98141 0.98466 1.21729 0.97627 0.98155 0.92079 1.21744 0.98752 0.92650 1.00436 1.19608 0.96974 0.95717 0.93447 1.22964 0.93830 0.80907 1.05914 1.21860 0.97550 0.98206 0.97205 0.93034 0.99761 0.99131 0.91792 0.93346 0.90185 0.88684 0.89316 0.70013 0.80775 0.80499 0.81653 0.82866 0.90319 0.84966 0.94103 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 13.29 21.45 0.28 -57.53 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 3 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.53 -29.65 8.39 25.60 0.21 -29.43 16 8 H 0.06 3.45 7.06 -2.91 -0.02 3.43 16 9 C 0.03 1.77 4.45 29.85 0.13 1.90 16 10 C -0.07 -3.04 2.10 -10.77 -0.02 -3.06 16 11 C -0.12 -4.16 5.36 30.67 0.16 -3.99 16 12 C 0.12 3.41 6.44 86.36 0.56 3.97 16 13 N -0.58 -18.34 2.97 -821.73 -2.44 -20.78 16 14 C 0.58 18.22 7.63 86.71 0.66 18.88 16 15 O -0.55 -18.14 13.24 -3.97 -0.05 -18.19 16 16 C 0.04 1.17 6.87 43.56 0.30 1.47 16 17 N -0.20 -6.19 7.33 -44.78 -0.33 -6.52 16 18 N -0.33 -9.27 11.40 -169.53 -1.93 -11.20 16 19 C 0.34 7.07 7.91 85.33 0.67 7.74 16 20 O -0.47 -6.12 12.94 -85.69 -1.11 -7.22 16 21 C -0.12 -2.27 5.76 -21.25 -0.12 -2.39 16 22 C -0.08 -0.78 9.63 22.26 0.21 -0.57 16 23 C -0.09 -0.69 9.95 22.09 0.22 -0.47 16 24 C -0.08 -0.90 9.96 22.11 0.22 -0.68 16 25 C -0.12 -2.38 9.32 22.20 0.21 -2.17 16 26 C -0.05 -1.22 5.90 -19.98 -0.12 -1.34 16 27 C 0.09 2.78 5.91 86.51 0.51 3.29 16 28 C -0.11 -4.21 5.20 30.81 0.16 -4.05 16 29 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 30 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 31 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 35 H 0.09 2.69 7.01 -2.39 -0.02 2.68 16 36 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 37 H 0.43 0.98 9.06 -74.06 -0.67 0.31 16 38 H 0.17 0.67 7.75 -2.91 -0.02 0.65 16 39 H 0.18 -0.07 8.06 -2.91 -0.02 -0.09 16 40 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 41 H 0.15 3.67 5.32 -2.91 -0.02 3.66 16 42 H 0.08 2.39 8.14 -2.38 -0.02 2.38 16 43 H 0.13 4.31 4.11 -88.86 -0.37 3.94 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.07 2.92 6.91 -2.38 -0.02 2.91 16 Total: -1.00 -76.85 365.03 0.91 -75.95 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.02 Total: 9.28 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 4.44 Total: -10.62 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -4.41 Total: -96.03 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.16 Total: -25.42 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -76.85 0.91 -75.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572162600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.506 kcal (2) G-P(sol) polarization free energy of solvation -76.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds