Wall clock time and date at job start Sat Apr 11 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48496 * 109.47038 * 269.99864 * 3 2 1 5 5 H 1.48505 * 109.47075 * 29.99731 * 3 2 1 6 6 H 1.48497 * 109.47258 * 149.99521 * 3 2 1 7 7 C 1.39008 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00143 * 169.13352 * 7 2 1 9 9 N 1.36896 * 119.99799 * 349.12932 * 7 2 1 10 10 C 1.38218 * 125.61688 * 136.10563 * 9 7 2 11 11 C 1.46889 * 125.43522 * 359.97438 * 10 9 7 12 12 O 1.21664 * 119.99898 * 173.33434 * 11 10 9 13 13 N 1.34775 * 120.00104 * 353.60403 * 11 10 9 14 14 C 1.46498 * 119.99807 * 184.41537 * 13 11 10 15 15 H 1.08996 * 110.01926 * 325.70210 * 14 13 11 16 16 C 1.53876 * 110.03662 * 87.09674 * 14 13 11 17 17 C 1.54270 * 106.59546 * 119.28261 * 16 14 13 18 18 C 1.54883 * 104.19944 * 23.61196 * 17 16 14 19 19 H 1.08996 * 110.75713 * 80.55518 * 18 17 16 20 20 C 1.50703 * 110.75864 * 203.74110 * 18 17 16 21 21 N 1.34779 * 119.99830 * 298.55004 * 20 18 17 22 22 O 1.21278 * 120.00041 * 118.54016 * 20 18 17 23 23 C 1.54270 * 110.03111 * 204.31634 * 14 13 11 24 24 C 1.36120 * 109.12346 * 179.71955 * 10 9 7 25 25 C 1.41696 * 107.75124 * 0.26720 * 24 10 9 26 26 C 1.40018 * 133.35141 * 180.02562 * 25 24 10 27 27 C 1.36579 * 119.83490 * 179.97438 * 26 25 24 28 28 C 1.38858 * 120.59516 * 0.06728 * 27 26 25 29 29 C 1.37838 * 120.63301 * 359.96068 * 28 27 26 30 30 C 1.37840 * 125.62635 * 316.29213 * 9 7 2 31 31 H 0.96999 * 120.00315 * 5.02920 * 1 2 3 32 32 H 0.97004 * 119.99916 * 4.41159 * 13 11 10 33 33 H 1.09000 * 110.03053 * 238.56752 * 16 14 13 34 34 H 1.09000 * 110.02839 * 359.95434 * 16 14 13 35 35 H 1.09004 * 110.48430 * 142.29462 * 17 16 14 36 36 H 1.08996 * 110.48302 * 264.93013 * 17 16 14 37 37 H 0.97002 * 120.00014 * 359.97438 * 21 20 18 38 38 H 0.97002 * 119.99862 * 179.97438 * 21 20 18 39 39 H 1.09001 * 110.48161 * 335.77950 * 23 14 13 40 40 H 1.09003 * 110.48792 * 98.42278 * 23 14 13 41 41 H 1.08001 * 126.12336 * 180.24965 * 24 10 9 42 42 H 1.08002 * 120.08705 * 359.97438 * 26 25 24 43 43 H 1.07995 * 119.70209 * 180.02562 * 27 26 25 44 44 H 1.07996 * 119.68084 * 179.97438 * 28 27 26 45 45 H 1.08010 * 120.09386 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4950 2.0464 -1.4000 5 1 1.4448 2.6527 0.7000 6 1 3.5450 1.4403 0.7001 7 6 2.0086 -1.2038 0.0005 8 1 3.0741 -1.2122 -0.1758 9 7 1.3426 -2.3786 0.2247 10 6 1.5186 -3.5517 -0.4848 11 6 2.4523 -3.7386 -1.6033 12 8 2.6164 -4.8458 -2.0801 13 7 3.1311 -2.6845 -2.0978 14 6 3.9881 -2.8518 -3.2741 15 1 4.4464 -3.8406 -3.2643 16 6 3.1619 -2.6665 -4.5589 17 6 3.7808 -1.4708 -5.3121 18 6 5.2377 -1.4062 -4.7906 19 1 5.8635 -2.1384 -5.3007 20 6 5.8022 -0.0184 -4.9534 21 7 5.9176 0.5222 -6.1826 22 8 6.1525 0.6120 -3.9783 23 6 5.0810 -1.7631 -3.2908 24 6 0.6929 -4.5077 0.0223 25 6 -0.0395 -3.9257 1.0865 26 6 -1.0161 -4.4158 1.9622 27 6 -1.5517 -3.5931 2.9117 28 6 -1.1377 -2.2718 3.0171 29 6 -0.1783 -1.7665 2.1662 30 6 0.3832 -2.5857 1.1925 31 1 -0.4850 0.8368 -0.0736 32 1 3.0522 -1.8151 -1.6748 33 1 3.2200 -3.5652 -5.1730 34 1 2.1231 -2.4529 -4.3072 35 1 3.7680 -1.6494 -6.3874 36 1 3.2480 -0.5510 -5.0709 37 1 5.6377 0.0179 -6.9625 38 1 6.2807 1.4156 -6.2874 39 1 4.7586 -0.8903 -2.7228 40 1 6.0163 -2.1552 -2.8913 41 1 0.6105 -5.5271 -0.3247 42 1 -1.3450 -5.4417 1.8869 43 1 -2.3045 -3.9734 3.5863 44 1 -1.5714 -1.6342 3.7732 45 1 0.1370 -0.7373 2.2557 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590887620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:02 Heat of formation + Delta-G solvation = -27.259094 kcal Electronic energy + Delta-G solvation = -29861.219360 eV Core-core repulsion = 25843.124973 eV Total energy + Delta-G solvation = -4018.094387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.53960 -40.05503 -38.68049 -36.93879 -35.89834 -33.97661 -33.69088 -32.93721 -30.72240 -29.20467 -28.91659 -28.41667 -27.25530 -25.04417 -23.20047 -22.51422 -21.01623 -20.47288 -20.05485 -19.64537 -19.14522 -18.14057 -17.60570 -16.95083 -16.55110 -15.80768 -15.62194 -15.43364 -14.84526 -14.64136 -14.47911 -14.30040 -14.09748 -13.57012 -13.25036 -13.11775 -13.01918 -12.90299 -12.53007 -12.09992 -12.01871 -11.88045 -11.65429 -11.50507 -11.41937 -11.23522 -11.18672 -10.91806 -10.75615 -10.65268 -10.54519 -10.17401 -9.96863 -9.87004 -9.77916 -9.35888 -9.26366 -8.64561 -8.47738 -7.17289 -6.85818 -6.60426 -4.69053 1.85715 2.51223 2.76527 2.94660 2.99023 3.01662 3.15702 3.33082 3.70384 3.85517 4.23862 4.39001 4.46924 4.55712 4.68141 4.79905 5.08160 5.09608 5.31561 5.39605 5.45702 5.52913 5.59616 5.76467 5.76945 5.89140 5.96958 6.02133 6.16106 6.19590 6.28547 6.37296 6.44540 6.57867 6.58587 6.70506 6.83007 6.92333 7.09960 7.12233 7.13337 7.14897 7.47548 7.58411 7.65171 7.92368 7.95288 8.11279 8.25974 8.30853 8.68133 8.99293 9.26333 10.11020 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.003867 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.755563 B = 7238.432869 C = 8879.154764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.062 3.938 3 Si 0.920 3.080 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.376 4.376 8 H 0.107 0.893 9 N -0.258 5.258 10 C -0.020 4.020 11 C 0.597 3.403 12 O -0.560 6.560 13 N -0.723 5.723 14 C 0.139 3.861 15 H 0.091 0.909 16 C -0.135 4.135 17 C -0.111 4.111 18 C -0.115 4.115 19 H 0.107 0.893 20 C 0.524 3.476 21 N -0.858 5.858 22 O -0.538 6.538 23 C -0.111 4.111 24 C -0.165 4.165 25 C -0.134 4.134 26 C -0.086 4.086 27 C -0.161 4.161 28 C -0.147 4.147 29 C -0.056 4.056 30 C 0.105 3.895 31 H 0.284 0.716 32 H 0.416 0.584 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.401 0.599 38 H 0.399 0.601 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 1.083 -9.764 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.152 4.152 3 Si 0.743 3.257 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.503 4.503 8 H 0.125 0.875 9 N 0.078 4.922 10 C -0.135 4.135 11 C 0.387 3.613 12 O -0.439 6.439 13 N -0.382 5.382 14 C 0.033 3.967 15 H 0.109 0.891 16 C -0.173 4.173 17 C -0.150 4.150 18 C -0.137 4.137 19 H 0.125 0.875 20 C 0.309 3.691 21 N -0.421 5.421 22 O -0.414 6.414 23 C -0.150 4.150 24 C -0.193 4.193 25 C -0.138 4.138 26 C -0.105 4.105 27 C -0.180 4.180 28 C -0.167 4.167 29 C -0.076 4.076 30 C -0.010 4.010 31 H 0.094 0.906 32 H 0.262 0.738 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.229 0.771 38 H 0.229 0.771 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.149 0.851 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.559 1.065 -9.409 11.519 hybrid contribution 0.155 1.509 -0.473 1.589 sum 6.714 2.575 -9.882 12.221 Atomic orbital electron populations 1.69923 1.06333 1.29583 1.38399 1.25653 0.95553 1.00415 0.93619 0.86004 0.80007 0.79995 0.79684 1.19134 1.19730 1.18235 1.19500 0.93221 0.82227 1.55391 0.87543 1.39936 1.26399 1.06956 1.18924 1.20129 1.04820 0.89706 0.98810 1.17275 0.78848 0.83826 0.81357 1.90700 1.66393 1.24670 1.62158 1.46861 1.46429 1.14237 1.30722 1.21502 0.90215 0.99586 0.85379 0.89101 1.22611 1.00775 0.97646 0.96317 1.22354 0.92978 0.99904 0.99715 1.22287 0.98225 0.93857 0.99340 0.87500 1.20600 0.77077 0.88543 0.82855 1.43887 1.68332 1.21201 1.08713 1.90768 1.48834 1.63190 1.38607 1.22512 0.99047 0.99354 0.94051 1.20367 1.00502 0.98466 1.00001 1.18023 1.01664 0.93960 1.00181 1.20057 0.96676 0.98340 0.95392 1.20266 1.02563 0.94554 1.00626 1.20566 0.99799 0.95589 1.00775 1.20059 0.96083 0.98159 0.93257 1.18215 0.96284 0.93554 0.92906 0.90552 0.73776 0.90940 0.90474 0.90956 0.90927 0.77122 0.77057 0.89457 0.90333 0.85060 0.87769 0.87935 0.87720 0.86869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.11 10.94 55.50 0.61 -19.51 16 2 C 0.06 1.45 4.67 -17.47 -0.08 1.37 16 3 Si 0.92 18.16 29.57 -169.99 -5.03 13.14 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.38 -9.00 7.76 -15.01 -0.12 -9.12 16 8 H 0.11 2.41 6.34 -52.49 -0.33 2.08 16 9 N -0.26 -6.46 2.80 -56.08 -0.16 -6.62 16 10 C -0.02 -0.48 6.77 -82.25 -0.56 -1.04 16 11 C 0.60 13.35 7.76 -12.76 -0.10 13.25 16 12 O -0.56 -13.11 16.49 5.22 0.09 -13.02 16 13 N -0.72 -13.90 4.92 -53.96 -0.27 -14.16 16 14 C 0.14 2.11 3.27 -66.81 -0.22 1.89 16 15 H 0.09 1.42 7.52 -51.93 -0.39 1.02 16 16 C -0.13 -1.78 6.59 -25.61 -0.17 -1.95 16 17 C -0.11 -1.14 6.22 -25.07 -0.16 -1.30 16 18 C -0.12 -1.20 3.29 -89.74 -0.30 -1.49 16 19 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 20 C 0.52 6.13 7.42 -10.98 -0.08 6.05 16 21 N -0.86 -6.23 8.82 31.22 0.28 -5.95 16 22 O -0.54 -8.90 16.63 5.56 0.09 -8.81 16 23 C -0.11 -1.51 5.57 -25.03 -0.14 -1.65 16 24 C -0.17 -3.90 10.55 -39.02 -0.41 -4.31 16 25 C -0.13 -3.17 6.16 -106.90 -0.66 -3.82 16 26 C -0.09 -1.77 10.06 -39.51 -0.40 -2.17 16 27 C -0.16 -3.12 9.97 -39.95 -0.40 -3.52 16 28 C -0.15 -3.00 10.02 -39.50 -0.40 -3.39 16 29 C -0.06 -1.31 8.61 -39.41 -0.34 -1.65 16 30 C 0.11 2.64 6.04 -83.84 -0.51 2.13 16 31 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 32 H 0.42 8.32 4.16 -40.82 -0.17 8.15 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.21 7.92 -51.93 -0.41 0.80 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 37 H 0.40 1.66 8.82 -40.82 -0.36 1.30 16 38 H 0.40 2.58 8.93 -40.82 -0.36 2.22 16 39 H 0.09 1.38 7.12 -51.93 -0.37 1.01 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.13 2.85 8.06 -52.49 -0.42 2.43 16 42 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 45 H 0.11 2.70 6.70 -52.48 -0.35 2.34 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -31.46 370.88 -9.51 -40.97 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -5.69 Total: 19.10 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -5.02 Total: -10.71 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.46 Total: -46.24 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.18 Total: -21.83 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.46 -9.51 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590887620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.707 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds