Wall clock time and date at job start Sat Apr 11 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48496 * 109.47038 * 269.99864 * 3 2 1 5 5 H 1.48505 * 109.47075 * 29.99731 * 3 2 1 6 6 H 1.48497 * 109.47258 * 149.99521 * 3 2 1 7 7 C 1.39008 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00143 * 169.13352 * 7 2 1 9 9 N 1.36896 * 119.99799 * 349.12932 * 7 2 1 10 10 C 1.38218 * 125.61688 * 136.10563 * 9 7 2 11 11 C 1.46889 * 125.43522 * 359.97438 * 10 9 7 12 12 O 1.21664 * 119.99898 * 173.33434 * 11 10 9 13 13 N 1.34775 * 120.00104 * 353.60403 * 11 10 9 14 14 C 1.46498 * 119.99807 * 184.41537 * 13 11 10 15 15 H 1.08996 * 110.01926 * 325.70210 * 14 13 11 16 16 C 1.53876 * 110.03662 * 87.09674 * 14 13 11 17 17 C 1.54270 * 106.59546 * 119.28261 * 16 14 13 18 18 C 1.54883 * 104.19944 * 23.61196 * 17 16 14 19 19 H 1.08996 * 110.75713 * 80.55518 * 18 17 16 20 20 C 1.50703 * 110.75864 * 203.74110 * 18 17 16 21 21 N 1.34779 * 119.99830 * 298.55004 * 20 18 17 22 22 O 1.21278 * 120.00041 * 118.54016 * 20 18 17 23 23 C 1.54270 * 110.03111 * 204.31634 * 14 13 11 24 24 C 1.36120 * 109.12346 * 179.71955 * 10 9 7 25 25 C 1.41696 * 107.75124 * 0.26720 * 24 10 9 26 26 C 1.40018 * 133.35141 * 180.02562 * 25 24 10 27 27 C 1.36579 * 119.83490 * 179.97438 * 26 25 24 28 28 C 1.38858 * 120.59516 * 0.06728 * 27 26 25 29 29 C 1.37838 * 120.63301 * 359.96068 * 28 27 26 30 30 C 1.37840 * 125.62635 * 316.29213 * 9 7 2 31 31 H 0.96999 * 120.00315 * 5.02920 * 1 2 3 32 32 H 0.97004 * 119.99916 * 4.41159 * 13 11 10 33 33 H 1.09000 * 110.03053 * 238.56752 * 16 14 13 34 34 H 1.09000 * 110.02839 * 359.95434 * 16 14 13 35 35 H 1.09004 * 110.48430 * 142.29462 * 17 16 14 36 36 H 1.08996 * 110.48302 * 264.93013 * 17 16 14 37 37 H 0.97002 * 120.00014 * 359.97438 * 21 20 18 38 38 H 0.97002 * 119.99862 * 179.97438 * 21 20 18 39 39 H 1.09001 * 110.48161 * 335.77950 * 23 14 13 40 40 H 1.09003 * 110.48792 * 98.42278 * 23 14 13 41 41 H 1.08001 * 126.12336 * 180.24965 * 24 10 9 42 42 H 1.08002 * 120.08705 * 359.97438 * 26 25 24 43 43 H 1.07995 * 119.70209 * 180.02562 * 27 26 25 44 44 H 1.07996 * 119.68084 * 179.97438 * 28 27 26 45 45 H 1.08010 * 120.09386 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4950 2.0464 -1.4000 5 1 1.4448 2.6527 0.7000 6 1 3.5450 1.4403 0.7001 7 6 2.0086 -1.2038 0.0005 8 1 3.0741 -1.2122 -0.1758 9 7 1.3426 -2.3786 0.2247 10 6 1.5186 -3.5517 -0.4848 11 6 2.4523 -3.7386 -1.6033 12 8 2.6164 -4.8458 -2.0801 13 7 3.1311 -2.6845 -2.0978 14 6 3.9881 -2.8518 -3.2741 15 1 4.4464 -3.8406 -3.2643 16 6 3.1619 -2.6665 -4.5589 17 6 3.7808 -1.4708 -5.3121 18 6 5.2377 -1.4062 -4.7906 19 1 5.8635 -2.1384 -5.3007 20 6 5.8022 -0.0184 -4.9534 21 7 5.9176 0.5222 -6.1826 22 8 6.1525 0.6120 -3.9783 23 6 5.0810 -1.7631 -3.2908 24 6 0.6929 -4.5077 0.0223 25 6 -0.0395 -3.9257 1.0865 26 6 -1.0161 -4.4158 1.9622 27 6 -1.5517 -3.5931 2.9117 28 6 -1.1377 -2.2718 3.0171 29 6 -0.1783 -1.7665 2.1662 30 6 0.3832 -2.5857 1.1925 31 1 -0.4850 0.8368 -0.0736 32 1 3.0522 -1.8151 -1.6748 33 1 3.2200 -3.5652 -5.1730 34 1 2.1231 -2.4529 -4.3072 35 1 3.7680 -1.6494 -6.3874 36 1 3.2480 -0.5510 -5.0709 37 1 5.6377 0.0179 -6.9625 38 1 6.2807 1.4156 -6.2874 39 1 4.7586 -0.8903 -2.7228 40 1 6.0163 -2.1552 -2.8913 41 1 0.6105 -5.5271 -0.3247 42 1 -1.3450 -5.4417 1.8869 43 1 -2.3045 -3.9734 3.5863 44 1 -1.5714 -1.6342 3.7732 45 1 0.1370 -0.7373 2.2557 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590887620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:01 Heat of formation + Delta-G solvation = -48.182433 kcal Electronic energy + Delta-G solvation = -29862.126664 eV Core-core repulsion = 25843.124973 eV Total energy + Delta-G solvation = -4019.001692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.24734 -41.13816 -40.16362 -38.20386 -37.59471 -35.52222 -34.89385 -34.26036 -32.49236 -30.80059 -30.06534 -29.91735 -28.62167 -26.85665 -24.75312 -23.54033 -22.74541 -21.99910 -21.25788 -21.03422 -20.58410 -19.85134 -18.50919 -18.14913 -17.83491 -17.38823 -16.87163 -16.80666 -16.51711 -16.24640 -15.95069 -15.62210 -15.39659 -14.85457 -14.79824 -14.74543 -14.60793 -14.31338 -14.18652 -13.63020 -13.48877 -13.19312 -13.15511 -12.97951 -12.82397 -12.69433 -12.34968 -12.24350 -12.16398 -12.00798 -11.86971 -11.58369 -11.46990 -11.10403 -11.02674 -10.93810 -10.64510 -10.40842 -10.01868 -8.94645 -8.64003 -8.36453 -6.54307 0.11902 1.09580 1.32619 1.33276 1.41359 1.43653 1.62329 2.03404 2.25341 2.47435 2.62410 2.77949 2.89915 3.35439 3.41558 3.52046 3.90331 4.04590 4.21158 4.23945 4.30335 4.38288 4.42511 4.45794 4.49634 4.54972 4.61525 4.73425 4.84042 4.86387 4.99921 5.01570 5.03126 5.12371 5.19607 5.21423 5.26111 5.35677 5.44361 5.63348 5.73585 5.89412 5.91143 5.95769 6.20192 6.23373 6.47606 6.53780 6.58024 6.89770 7.27855 7.36625 7.45893 8.33463 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.003867 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.755563 B = 7238.432869 C = 8879.154764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.033 3.967 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.109 0.891 9 N -0.272 5.272 10 C -0.047 4.047 11 C 0.593 3.407 12 O -0.578 6.578 13 N -0.717 5.717 14 C 0.131 3.869 15 H 0.089 0.911 16 C -0.132 4.132 17 C -0.101 4.101 18 C -0.104 4.104 19 H 0.145 0.855 20 C 0.522 3.478 21 N -0.833 5.833 22 O -0.595 6.595 23 C -0.111 4.111 24 C -0.176 4.176 25 C -0.155 4.155 26 C -0.090 4.090 27 C -0.154 4.154 28 C -0.135 4.135 29 C -0.086 4.086 30 C 0.075 3.925 31 H 0.287 0.713 32 H 0.412 0.588 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.420 0.580 38 H 0.406 0.594 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.147 0.853 44 H 0.137 0.863 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 1.094 -10.838 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.518 4.518 8 H 0.126 0.874 9 N 0.063 4.937 10 C -0.162 4.162 11 C 0.382 3.618 12 O -0.460 6.460 13 N -0.374 5.374 14 C 0.027 3.973 15 H 0.107 0.893 16 C -0.171 4.171 17 C -0.138 4.138 18 C -0.125 4.125 19 H 0.163 0.837 20 C 0.307 3.693 21 N -0.397 5.397 22 O -0.476 6.476 23 C -0.150 4.150 24 C -0.204 4.204 25 C -0.160 4.160 26 C -0.109 4.109 27 C -0.173 4.173 28 C -0.155 4.155 29 C -0.106 4.106 30 C -0.039 4.039 31 H 0.097 0.903 32 H 0.257 0.743 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.135 0.865 36 H 0.075 0.925 37 H 0.251 0.749 38 H 0.237 0.763 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.165 0.835 44 H 0.155 0.845 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.502 1.077 -10.555 12.444 hybrid contribution 0.111 1.445 -0.099 1.453 sum 6.613 2.523 -10.654 12.791 Atomic orbital electron populations 1.70006 1.07608 1.30371 1.39372 1.26347 0.96060 1.02737 0.92751 0.85117 0.78759 0.76474 0.79544 1.19006 1.18983 1.18261 1.19762 0.93514 0.82641 1.55926 0.87375 1.40117 1.26901 1.07280 1.19397 1.20576 1.05836 0.90008 0.99776 1.17204 0.79082 0.84251 0.81227 1.90660 1.67289 1.25210 1.62808 1.46895 1.45956 1.13095 1.31467 1.21831 0.90519 1.00153 0.84824 0.89306 1.22563 0.98781 0.99964 0.95758 1.22325 0.92036 0.97611 1.01861 1.22272 0.98960 0.94262 0.97007 0.83713 1.20772 0.76581 0.88671 0.83261 1.43678 1.66539 1.21452 1.08017 1.90755 1.51653 1.64509 1.40676 1.22458 0.98389 0.97526 0.96581 1.20615 1.00632 0.98918 1.00262 1.18418 1.02817 0.93711 1.01033 1.20480 0.95586 1.00100 0.94704 1.20745 1.02471 0.93693 1.00342 1.21019 0.97923 0.96643 0.99932 1.20144 0.98130 0.97703 0.94669 1.18703 0.96893 0.94729 0.93619 0.90306 0.74334 0.89087 0.93443 0.86518 0.92533 0.74863 0.76256 0.92238 0.89773 0.83952 0.84747 0.83529 0.84543 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.08 10.94 21.67 0.24 -42.85 16 2 C 0.03 1.58 4.67 84.95 0.40 1.98 16 3 Si 0.98 38.33 29.57 68.60 2.03 40.36 16 4 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.39 -19.66 7.76 84.09 0.65 -19.01 16 8 H 0.11 5.20 6.34 -2.91 -0.02 5.18 16 9 N -0.27 -14.28 2.80 -331.34 -0.93 -15.21 16 10 C -0.05 -2.41 6.77 39.91 0.27 -2.14 16 11 C 0.59 27.76 7.76 86.51 0.67 28.43 16 12 O -0.58 -27.94 16.49 -4.23 -0.07 -28.01 16 13 N -0.72 -28.90 4.92 -442.87 -2.18 -31.08 16 14 C 0.13 4.04 3.27 45.72 0.15 4.19 16 15 H 0.09 2.78 7.52 -2.39 -0.02 2.76 16 16 C -0.13 -3.40 6.59 31.32 0.21 -3.19 16 17 C -0.10 -1.82 6.22 31.67 0.20 -1.62 16 18 C -0.10 -1.93 3.29 -10.22 -0.03 -1.96 16 19 H 0.15 1.65 8.14 -2.39 -0.02 1.64 16 20 C 0.52 11.32 7.42 87.66 0.65 11.97 16 21 N -0.83 -9.72 8.82 -173.53 -1.53 -11.25 16 22 O -0.60 -19.66 16.63 -3.02 -0.05 -19.71 16 23 C -0.11 -3.01 5.57 31.70 0.18 -2.84 16 24 C -0.18 -8.58 10.55 22.63 0.24 -8.35 16 25 C -0.16 -7.46 6.16 -21.34 -0.13 -7.59 16 26 C -0.09 -3.57 10.06 22.31 0.22 -3.34 16 27 C -0.15 -5.51 9.97 22.03 0.22 -5.29 16 28 C -0.13 -5.29 10.02 22.32 0.22 -5.06 16 29 C -0.09 -4.11 8.61 22.38 0.19 -3.92 16 30 C 0.08 3.88 6.04 39.06 0.24 4.12 16 31 H 0.29 13.57 8.31 -92.71 -0.77 12.80 16 32 H 0.41 17.48 4.16 -92.71 -0.39 17.10 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.05 1.51 7.92 -2.39 -0.02 1.50 16 35 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.23 8.04 -2.39 -0.02 1.21 16 37 H 0.42 1.78 8.82 -92.71 -0.82 0.96 16 38 H 0.41 4.25 8.93 -92.71 -0.83 3.42 16 39 H 0.06 1.97 7.12 -2.39 -0.02 1.95 16 40 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.14 6.36 8.06 -2.91 -0.02 6.33 16 42 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 43 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 44 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 45 H 0.10 4.86 6.70 -2.91 -0.02 4.84 16 Total: -1.00 -73.01 370.88 1.08 -71.93 By element: Atomic # 1 Polarization: 50.43 SS G_CDS: -0.96 Total: 49.47 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 4.54 Total: -13.64 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -4.40 Total: -100.39 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -0.12 Total: -47.73 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -73.01 1.08 -71.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590887620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.748 kcal (2) G-P(sol) polarization free energy of solvation -73.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds