Wall clock time and date at job start Sat Apr 11 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86793 * 120.00204 * 2 1 4 4 H 1.48502 * 109.47324 * 95.01928 * 3 2 1 5 5 H 1.48500 * 109.47249 * 215.02392 * 3 2 1 6 6 H 1.48508 * 109.47197 * 335.02149 * 3 2 1 7 7 C 1.39013 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00243 * 198.93979 * 7 2 1 9 9 N 1.36898 * 119.99562 * 18.94007 * 7 2 1 10 10 C 1.38207 * 125.61697 * 223.72451 * 9 7 2 11 11 C 1.46886 * 125.44169 * 359.97402 * 10 9 7 12 12 O 1.21665 * 120.00355 * 186.15614 * 11 10 9 13 13 N 1.34780 * 119.99627 * 6.14500 * 11 10 9 14 14 C 1.46504 * 119.99912 * 184.80579 * 13 11 10 15 15 C 1.52998 * 109.47183 * 181.22198 * 14 13 11 16 16 H 1.08997 * 109.39941 * 53.85189 * 15 14 13 17 17 C 1.53062 * 109.40086 * 173.68190 * 15 14 13 18 18 C 1.53290 * 108.45604 * 169.09959 * 17 15 14 19 19 C 1.52922 * 108.61207 * 292.37543 * 18 17 15 20 20 N 1.45751 * 110.49060 * 50.76942 * 19 18 17 21 21 C 1.33357 * 124.10208 * 340.90075 * 20 19 18 22 22 O 1.21285 * 118.24147 * 182.24165 * 21 20 19 23 23 C 1.36125 * 109.12560 * 179.97438 * 10 9 7 24 24 C 1.41705 * 107.74924 * 0.02562 * 23 10 9 25 25 C 1.40013 * 133.35460 * 179.97438 * 24 23 10 26 26 C 1.36583 * 119.83096 * 179.97438 * 25 24 23 27 27 C 1.38847 * 120.60013 * 359.97438 * 26 25 24 28 28 C 1.37844 * 120.63316 * 0.02562 * 27 26 25 29 29 C 1.37837 * 125.62091 * 43.42520 * 9 7 2 30 30 H 0.96997 * 119.99844 * 180.02562 * 1 2 3 31 31 H 0.96994 * 119.99887 * 4.81532 * 13 11 10 32 32 H 1.08998 * 109.47031 * 301.22042 * 14 13 11 33 33 H 1.09002 * 109.47093 * 61.22147 * 14 13 11 34 34 H 1.08997 * 109.67760 * 288.75848 * 17 15 14 35 35 H 1.09003 * 109.67509 * 49.29975 * 17 15 14 36 36 H 1.09004 * 109.62239 * 172.64804 * 18 17 15 37 37 H 1.08994 * 109.78572 * 52.19952 * 18 17 15 38 38 H 1.09008 * 109.29698 * 290.45797 * 19 18 17 39 39 H 1.09004 * 109.13516 * 170.97727 * 19 18 17 40 40 H 0.96998 * 117.94734 * 160.92600 * 20 19 18 41 41 H 1.07994 * 126.12918 * 179.97438 * 23 10 9 42 42 H 1.08005 * 120.08567 * 359.97438 * 25 24 23 43 43 H 1.08002 * 119.69749 * 180.02562 * 26 25 24 44 44 H 1.08004 * 119.68349 * 179.97438 * 27 26 25 45 45 H 1.08007 * 120.09164 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6176 0.0000 4 1 2.6012 1.9851 1.3947 5 1 3.4880 1.4730 -0.8035 6 1 1.3960 2.6810 -0.5912 7 6 2.0086 -1.2039 -0.0005 8 1 3.0447 -1.2294 0.3030 9 7 1.3796 -2.3571 -0.3859 10 6 1.4757 -3.5786 0.2536 11 6 2.2712 -3.8490 1.4584 12 8 2.3749 -4.9870 1.8762 13 7 2.8864 -2.8365 2.1010 14 6 3.7646 -3.1176 3.2394 15 6 4.3074 -1.8023 3.8018 16 1 3.4759 -1.1346 4.0275 17 6 5.0957 -2.0840 5.0832 18 6 5.8531 -0.8108 5.4768 19 6 6.9349 -0.5431 4.4296 20 7 6.3665 -0.5793 3.0880 21 6 5.2035 -1.1568 2.7841 22 8 4.8504 -1.1604 1.6238 23 6 0.7153 -4.4911 -0.4113 24 6 0.1138 -3.8322 -1.5123 25 6 -0.7526 -4.2534 -2.5283 26 6 -1.1729 -3.3633 -3.4752 27 6 -0.7491 -2.0416 -3.4403 28 6 0.1037 -1.6033 -2.4500 29 6 0.5417 -2.4901 -1.4722 30 1 -0.4850 -0.8400 0.0004 31 1 2.7475 -1.9218 1.8098 32 1 3.2008 -3.6384 4.0133 33 1 4.5952 -3.7429 2.9119 34 1 4.4092 -2.3628 5.8826 35 1 5.8039 -2.8938 4.9078 36 1 6.3161 -0.9476 6.4541 37 1 5.1634 0.0323 5.5137 38 1 7.7122 -1.3029 4.5122 39 1 7.3711 0.4395 4.6096 40 1 6.8655 -0.1573 2.3713 41 1 0.5930 -5.5312 -0.1477 42 1 -1.0877 -5.2795 -2.5631 43 1 -1.8415 -3.6905 -4.2577 44 1 -1.0904 -1.3504 -4.1968 45 1 0.4275 -0.5730 -2.4310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591056363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:05 Heat of formation + Delta-G solvation = -22.201929 kcal Electronic energy + Delta-G solvation = -30372.531358 eV Core-core repulsion = 26354.656266 eV Total energy + Delta-G solvation = -4017.875092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.71353 -40.37661 -38.35613 -36.53787 -35.99485 -35.05948 -33.68108 -32.54278 -30.56205 -30.28465 -28.94810 -28.05921 -26.08497 -24.67227 -23.69231 -22.97828 -21.89645 -20.93602 -20.08177 -19.57670 -19.01133 -18.28515 -17.33035 -16.52951 -16.31440 -15.80455 -15.58008 -15.16779 -14.83770 -14.74237 -14.23091 -14.17203 -14.10507 -13.89509 -13.69460 -13.40051 -13.13507 -13.02050 -12.93555 -12.34245 -12.07376 -12.03881 -11.82539 -11.64031 -11.52050 -11.25222 -11.17594 -11.08946 -10.81200 -10.47789 -10.34254 -10.25150 -9.82924 -9.65499 -9.32778 -9.14152 -9.08009 -8.72463 -8.37327 -7.43805 -6.96181 -6.68554 -4.55152 1.79917 2.68557 2.69825 3.06754 3.12574 3.16697 3.20001 3.36389 3.83157 3.90823 4.31175 4.39231 4.42207 4.45601 4.49099 4.61465 4.78674 4.95985 5.00218 5.10305 5.17438 5.32890 5.42572 5.51488 5.61938 5.69605 5.79182 5.83057 5.89096 5.93310 6.03561 6.15981 6.37787 6.47958 6.63440 6.71077 6.84765 6.99224 7.04032 7.13094 7.24757 7.42839 7.49231 7.55822 7.76326 7.86510 7.90616 8.23938 8.31653 8.42848 8.80205 9.05381 9.21561 10.18279 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014039 B = 0.004167 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.946925 B = 6717.438015 C = 8225.783563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.026 3.974 3 Si 1.081 2.919 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.451 4.451 8 H 0.129 0.871 9 N -0.260 5.260 10 C -0.019 4.019 11 C 0.595 3.405 12 O -0.566 6.566 13 N -0.717 5.717 14 C 0.138 3.862 15 C -0.117 4.117 16 H 0.112 0.888 17 C -0.116 4.116 18 C -0.137 4.137 19 C 0.111 3.889 20 N -0.726 5.726 21 C 0.514 3.486 22 O -0.521 6.521 23 C -0.170 4.170 24 C -0.129 4.129 25 C -0.081 4.081 26 C -0.161 4.161 27 C -0.138 4.138 28 C -0.079 4.079 29 C 0.065 3.935 30 H 0.290 0.710 31 H 0.425 0.575 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.399 0.601 41 H 0.133 0.867 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.506 2.383 9.540 14.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.189 4.189 3 Si 0.904 3.096 4 H -0.206 1.206 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.146 0.854 9 N 0.076 4.924 10 C -0.134 4.134 11 C 0.384 3.616 12 O -0.446 6.446 13 N -0.378 5.378 14 C 0.013 3.987 15 C -0.138 4.138 16 H 0.130 0.870 17 C -0.154 4.154 18 C -0.175 4.175 19 C -0.014 4.014 20 N -0.379 5.379 21 C 0.300 3.700 22 O -0.396 6.396 23 C -0.197 4.197 24 C -0.134 4.134 25 C -0.100 4.100 26 C -0.180 4.180 27 C -0.158 4.158 28 C -0.099 4.099 29 C -0.050 4.050 30 H 0.102 0.898 31 H 0.273 0.727 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.235 0.765 41 H 0.151 0.849 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.254 3.476 9.585 14.461 hybrid contribution 0.375 -0.989 -0.252 1.087 sum 10.629 2.487 9.333 14.362 Atomic orbital electron populations 1.70620 1.07021 1.32983 1.34835 1.26839 0.96086 1.03007 0.92990 0.83332 0.75196 0.73174 0.77849 1.20579 1.19925 1.19923 1.21101 0.99472 0.84979 1.52244 0.85425 1.40240 1.30241 1.06652 1.15221 1.20181 1.07035 0.88556 0.97674 1.17220 0.78101 0.84272 0.82013 1.90693 1.64214 1.21893 1.67835 1.46673 1.46565 1.12631 1.31898 1.21017 0.94128 0.93872 0.89654 1.21540 0.98696 0.98858 0.94744 0.87016 1.21639 0.99440 0.98099 0.96205 1.21876 0.98183 0.98707 0.98744 1.21358 0.96001 1.01976 0.82070 1.45470 1.22480 1.58920 1.11061 1.20110 0.81593 0.78283 0.90032 1.90835 1.71588 1.57315 1.19862 1.20377 1.02923 0.98478 0.97945 1.17998 1.03382 0.93345 0.98666 1.20107 0.97468 0.98332 0.94118 1.20304 1.03535 0.94000 1.00162 1.20570 1.00272 0.95762 0.99230 1.20156 0.98160 0.98344 0.93255 1.18440 1.00460 0.94673 0.91385 0.89820 0.72689 0.90850 0.91950 0.90018 0.90638 0.89604 0.90682 0.91787 0.90716 0.76547 0.84930 0.87550 0.87657 0.87331 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.21 12.37 55.50 0.69 -21.52 16 2 C 0.03 0.67 4.38 -17.47 -0.08 0.59 16 3 Si 1.08 22.54 29.96 -169.99 -5.09 17.44 16 4 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 7 C -0.45 -11.73 7.57 -15.00 -0.11 -11.85 16 8 H 0.13 3.34 4.75 -52.49 -0.25 3.09 16 9 N -0.26 -6.89 2.56 -56.08 -0.14 -7.03 16 10 C -0.02 -0.50 6.77 -82.25 -0.56 -1.05 16 11 C 0.59 14.44 7.76 -12.76 -0.10 14.35 16 12 O -0.57 -14.20 16.85 5.22 0.09 -14.11 16 13 N -0.72 -15.21 4.58 -61.55 -0.28 -15.49 16 14 C 0.14 2.25 4.93 -4.04 -0.02 2.23 16 15 C -0.12 -1.49 2.50 -91.99 -0.23 -1.72 16 16 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 17 C -0.12 -0.96 5.32 -26.55 -0.14 -1.10 16 18 C -0.14 -0.87 6.02 -26.62 -0.16 -1.03 16 19 C 0.11 0.73 7.16 -4.49 -0.03 0.69 16 20 N -0.73 -7.61 5.45 -61.38 -0.33 -7.95 16 21 C 0.51 7.48 7.28 -11.87 -0.09 7.39 16 22 O -0.52 -10.17 13.66 5.55 0.08 -10.09 16 23 C -0.17 -4.17 10.55 -39.02 -0.41 -4.58 16 24 C -0.13 -3.14 6.16 -106.89 -0.66 -3.80 16 25 C -0.08 -1.71 10.06 -39.51 -0.40 -2.11 16 26 C -0.16 -3.15 9.97 -39.95 -0.40 -3.55 16 27 C -0.14 -2.87 10.02 -39.50 -0.40 -3.26 16 28 C -0.08 -1.91 8.63 -39.41 -0.34 -2.25 16 29 C 0.06 1.68 5.36 -83.84 -0.45 1.23 16 30 H 0.29 8.21 6.73 -40.82 -0.27 7.94 16 31 H 0.43 9.54 3.53 -40.82 -0.14 9.40 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 38 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.40 3.95 8.80 -40.82 -0.36 3.59 16 41 H 0.13 3.00 8.06 -52.49 -0.42 2.58 16 42 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 43 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 44 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 45 H 0.12 2.86 6.94 -52.48 -0.36 2.50 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -32.98 363.38 -9.77 -42.75 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -5.68 Total: 20.35 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -4.57 Total: -9.82 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.07 Total: -52.00 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.16 Total: -24.21 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.09 Total: 17.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.98 -9.77 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591056363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.552 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds