Wall clock time and date at job start Sat Apr 11 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86793 * 120.00204 * 2 1 4 4 H 1.48502 * 109.47324 * 95.01928 * 3 2 1 5 5 H 1.48500 * 109.47249 * 215.02392 * 3 2 1 6 6 H 1.48508 * 109.47197 * 335.02149 * 3 2 1 7 7 C 1.39013 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00243 * 198.93979 * 7 2 1 9 9 N 1.36898 * 119.99562 * 18.94007 * 7 2 1 10 10 C 1.38207 * 125.61697 * 223.72451 * 9 7 2 11 11 C 1.46886 * 125.44169 * 359.97402 * 10 9 7 12 12 O 1.21665 * 120.00355 * 186.15614 * 11 10 9 13 13 N 1.34780 * 119.99627 * 6.14500 * 11 10 9 14 14 C 1.46504 * 119.99912 * 184.80579 * 13 11 10 15 15 C 1.52998 * 109.47183 * 181.22198 * 14 13 11 16 16 H 1.08997 * 109.39941 * 53.85189 * 15 14 13 17 17 C 1.53062 * 109.40086 * 173.68190 * 15 14 13 18 18 C 1.53290 * 108.45604 * 169.09959 * 17 15 14 19 19 C 1.52922 * 108.61207 * 292.37543 * 18 17 15 20 20 N 1.45751 * 110.49060 * 50.76942 * 19 18 17 21 21 C 1.33357 * 124.10208 * 340.90075 * 20 19 18 22 22 O 1.21285 * 118.24147 * 182.24165 * 21 20 19 23 23 C 1.36125 * 109.12560 * 179.97438 * 10 9 7 24 24 C 1.41705 * 107.74924 * 0.02562 * 23 10 9 25 25 C 1.40013 * 133.35460 * 179.97438 * 24 23 10 26 26 C 1.36583 * 119.83096 * 179.97438 * 25 24 23 27 27 C 1.38847 * 120.60013 * 359.97438 * 26 25 24 28 28 C 1.37844 * 120.63316 * 0.02562 * 27 26 25 29 29 C 1.37837 * 125.62091 * 43.42520 * 9 7 2 30 30 H 0.96997 * 119.99844 * 180.02562 * 1 2 3 31 31 H 0.96994 * 119.99887 * 4.81532 * 13 11 10 32 32 H 1.08998 * 109.47031 * 301.22042 * 14 13 11 33 33 H 1.09002 * 109.47093 * 61.22147 * 14 13 11 34 34 H 1.08997 * 109.67760 * 288.75848 * 17 15 14 35 35 H 1.09003 * 109.67509 * 49.29975 * 17 15 14 36 36 H 1.09004 * 109.62239 * 172.64804 * 18 17 15 37 37 H 1.08994 * 109.78572 * 52.19952 * 18 17 15 38 38 H 1.09008 * 109.29698 * 290.45797 * 19 18 17 39 39 H 1.09004 * 109.13516 * 170.97727 * 19 18 17 40 40 H 0.96998 * 117.94734 * 160.92600 * 20 19 18 41 41 H 1.07994 * 126.12918 * 179.97438 * 23 10 9 42 42 H 1.08005 * 120.08567 * 359.97438 * 25 24 23 43 43 H 1.08002 * 119.69749 * 180.02562 * 26 25 24 44 44 H 1.08004 * 119.68349 * 179.97438 * 27 26 25 45 45 H 1.08007 * 120.09164 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6176 0.0000 4 1 2.6012 1.9851 1.3947 5 1 3.4880 1.4730 -0.8035 6 1 1.3960 2.6810 -0.5912 7 6 2.0086 -1.2039 -0.0005 8 1 3.0447 -1.2294 0.3030 9 7 1.3796 -2.3571 -0.3859 10 6 1.4757 -3.5786 0.2536 11 6 2.2712 -3.8490 1.4584 12 8 2.3749 -4.9870 1.8762 13 7 2.8864 -2.8365 2.1010 14 6 3.7646 -3.1176 3.2394 15 6 4.3074 -1.8023 3.8018 16 1 3.4759 -1.1346 4.0275 17 6 5.0957 -2.0840 5.0832 18 6 5.8531 -0.8108 5.4768 19 6 6.9349 -0.5431 4.4296 20 7 6.3665 -0.5793 3.0880 21 6 5.2035 -1.1568 2.7841 22 8 4.8504 -1.1604 1.6238 23 6 0.7153 -4.4911 -0.4113 24 6 0.1138 -3.8322 -1.5123 25 6 -0.7526 -4.2534 -2.5283 26 6 -1.1729 -3.3633 -3.4752 27 6 -0.7491 -2.0416 -3.4403 28 6 0.1037 -1.6033 -2.4500 29 6 0.5417 -2.4901 -1.4722 30 1 -0.4850 -0.8400 0.0004 31 1 2.7475 -1.9218 1.8098 32 1 3.2008 -3.6384 4.0133 33 1 4.5952 -3.7429 2.9119 34 1 4.4092 -2.3628 5.8826 35 1 5.8039 -2.8938 4.9078 36 1 6.3161 -0.9476 6.4541 37 1 5.1634 0.0323 5.5137 38 1 7.7122 -1.3029 4.5122 39 1 7.3711 0.4395 4.6096 40 1 6.8655 -0.1573 2.3713 41 1 0.5930 -5.5312 -0.1477 42 1 -1.0877 -5.2795 -2.5631 43 1 -1.8415 -3.6905 -4.2577 44 1 -1.0904 -1.3504 -4.1968 45 1 0.4275 -0.5730 -2.4310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591056363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:04 Heat of formation + Delta-G solvation = -43.885386 kcal Electronic energy + Delta-G solvation = -30373.471624 eV Core-core repulsion = 26354.656266 eV Total energy + Delta-G solvation = -4018.815358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.44131 -41.55448 -40.10225 -37.76928 -37.48108 -36.46800 -35.52227 -33.76671 -32.38307 -31.38344 -30.62114 -29.78637 -27.23961 -26.58474 -24.85175 -24.22086 -23.03796 -22.74037 -21.83155 -21.20491 -20.35508 -19.83771 -18.36289 -18.02094 -17.54062 -17.45307 -17.25371 -16.60069 -16.33845 -16.20848 -15.82471 -15.58662 -15.44496 -15.14619 -14.93325 -14.83433 -14.73888 -14.35182 -14.14725 -14.09917 -13.76335 -13.48731 -13.44244 -12.83537 -12.68215 -12.47798 -12.22433 -12.17266 -12.11762 -12.09933 -12.00267 -11.90277 -11.58079 -11.18250 -10.95796 -10.75414 -10.56584 -10.04870 -10.01393 -9.37918 -8.84470 -8.53726 -6.54878 -0.01350 0.94958 1.25621 1.38796 1.47696 1.58879 1.72300 2.14977 2.25529 2.31975 2.43642 2.63403 2.87929 3.17976 3.48794 3.55175 3.77007 3.90058 3.99336 4.10700 4.17571 4.22926 4.31099 4.41530 4.49790 4.54353 4.61433 4.64802 4.70122 4.78541 4.85922 4.89593 5.07040 5.07836 5.08606 5.17501 5.28939 5.33015 5.45670 5.51774 5.72110 5.75015 5.81340 5.93435 6.04428 6.08168 6.31271 6.42990 6.58983 6.88664 7.18898 7.28497 7.30055 8.15168 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014039 B = 0.004167 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.946925 B = 6717.438015 C = 8225.783563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C -0.002 4.002 3 Si 1.121 2.879 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.462 4.462 8 H 0.122 0.878 9 N -0.279 5.279 10 C -0.051 4.051 11 C 0.585 3.415 12 O -0.585 6.585 13 N -0.712 5.712 14 C 0.132 3.868 15 C -0.111 4.111 16 H 0.108 0.892 17 C -0.110 4.110 18 C -0.133 4.133 19 C 0.101 3.899 20 N -0.714 5.714 21 C 0.506 3.494 22 O -0.583 6.583 23 C -0.176 4.176 24 C -0.149 4.149 25 C -0.082 4.082 26 C -0.151 4.151 27 C -0.120 4.120 28 C -0.114 4.114 29 C 0.041 3.959 30 H 0.269 0.731 31 H 0.421 0.579 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.401 0.599 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.154 0.846 44 H 0.143 0.857 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.022 2.838 10.103 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.212 4.212 3 Si 0.939 3.061 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.589 4.589 8 H 0.139 0.861 9 N 0.056 4.944 10 C -0.166 4.166 11 C 0.373 3.627 12 O -0.468 6.468 13 N -0.370 5.370 14 C 0.008 3.992 15 C -0.132 4.132 16 H 0.126 0.874 17 C -0.148 4.148 18 C -0.170 4.170 19 C -0.021 4.021 20 N -0.365 5.365 21 C 0.292 3.708 22 O -0.463 6.463 23 C -0.204 4.204 24 C -0.154 4.154 25 C -0.101 4.101 26 C -0.170 4.170 27 C -0.140 4.140 28 C -0.135 4.135 29 C -0.073 4.073 30 H 0.080 0.920 31 H 0.267 0.733 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.137 0.863 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.237 0.763 41 H 0.164 0.836 42 H 0.158 0.842 43 H 0.172 0.828 44 H 0.161 0.839 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.825 3.945 10.216 15.399 hybrid contribution 0.224 -1.223 -0.501 1.340 sum 11.049 2.723 9.716 14.963 Atomic orbital electron populations 1.70725 1.07684 1.31462 1.37425 1.28069 0.96015 1.05495 0.91607 0.82863 0.74155 0.70096 0.78977 1.18451 1.19862 1.19223 1.21206 0.99348 0.85532 1.52788 0.86119 1.40375 1.31209 1.06805 1.15998 1.20646 1.08126 0.88989 0.98807 1.17274 0.78539 0.84688 0.82164 1.90646 1.65299 1.22367 1.68458 1.46740 1.46086 1.11601 1.32526 1.21322 0.93280 0.96258 0.88310 1.21531 0.98864 0.96560 0.96250 0.87390 1.21692 0.99554 0.99599 0.93940 1.21921 0.97833 0.97205 1.00091 1.21748 0.96391 1.04216 0.79792 1.45526 1.21000 1.56908 1.13060 1.20451 0.82637 0.78257 0.89422 1.90808 1.73314 1.59968 1.22238 1.20653 1.02707 0.98946 0.98088 1.18400 1.04477 0.92819 0.99696 1.20562 0.96129 1.00400 0.93011 1.20824 1.02872 0.92877 1.00406 1.21071 0.97705 0.97158 0.98081 1.20233 1.00731 0.97601 0.94895 1.18932 1.00616 0.95976 0.91775 0.91980 0.73307 0.89656 0.92555 0.88340 0.90035 0.86260 0.91055 0.89970 0.88079 0.76311 0.83645 0.84203 0.82832 0.83899 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.24 12.37 21.67 0.27 -46.97 16 2 C 0.00 -0.09 4.38 84.95 0.37 0.28 16 3 Si 1.12 46.62 29.96 68.60 2.06 48.68 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.46 -25.41 7.57 84.09 0.64 -24.78 16 8 H 0.12 6.73 4.75 -2.91 -0.01 6.71 16 9 N -0.28 -15.61 2.56 -331.35 -0.85 -16.46 16 10 C -0.05 -2.78 6.77 39.91 0.27 -2.51 16 11 C 0.58 29.96 7.76 86.51 0.67 30.63 16 12 O -0.58 -30.59 16.85 -4.24 -0.07 -30.66 16 13 N -0.71 -31.89 4.58 -466.88 -2.14 -34.03 16 14 C 0.13 4.42 4.93 86.38 0.43 4.85 16 15 C -0.11 -2.80 2.50 -11.68 -0.03 -2.83 16 16 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 17 C -0.11 -1.57 5.32 30.71 0.16 -1.40 16 18 C -0.13 -1.22 6.02 30.67 0.18 -1.03 16 19 C 0.10 1.01 7.16 86.49 0.62 1.63 16 20 N -0.71 -14.16 5.45 -467.29 -2.55 -16.71 16 21 C 0.51 14.88 7.28 87.71 0.64 15.52 16 22 O -0.58 -23.91 13.66 -3.04 -0.04 -23.95 16 23 C -0.18 -8.96 10.55 22.63 0.24 -8.72 16 24 C -0.15 -7.35 6.16 -21.34 -0.13 -7.48 16 25 C -0.08 -3.28 10.06 22.31 0.22 -3.06 16 26 C -0.15 -5.39 9.97 22.03 0.22 -5.17 16 27 C -0.12 -4.75 10.02 22.32 0.22 -4.53 16 28 C -0.11 -5.62 8.63 22.38 0.19 -5.43 16 29 C 0.04 2.20 5.36 39.06 0.21 2.41 16 30 H 0.27 16.10 6.73 -92.71 -0.62 15.47 16 31 H 0.42 20.07 3.53 -92.71 -0.33 19.74 16 32 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 36 H 0.12 0.40 8.14 -2.38 -0.02 0.38 16 37 H 0.07 0.76 8.13 -2.39 -0.02 0.74 16 38 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.40 7.67 8.80 -92.71 -0.82 6.86 16 41 H 0.15 6.76 8.06 -2.91 -0.02 6.73 16 42 H 0.14 4.57 8.06 -2.91 -0.02 4.55 16 43 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 44 H 0.14 4.61 8.06 -2.91 -0.02 4.58 16 45 H 0.10 5.03 6.94 -2.91 -0.02 5.01 16 Total: -1.00 -77.86 363.38 1.86 -76.00 By element: Atomic # 1 Polarization: 55.69 SS G_CDS: 0.05 Total: 55.74 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 5.13 Total: -11.64 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -5.26 Total: -114.17 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -0.11 Total: -54.61 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.06 Total: 48.68 kcal Total: -77.86 1.86 -76.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591056363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.116 kcal (2) G-P(sol) polarization free energy of solvation -77.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds