Wall clock time and date at job start Sat Apr 11 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99534 * 2 1 4 4 H 1.48505 * 109.47154 * 239.99637 * 3 2 1 5 5 H 1.48500 * 109.47135 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46829 * 119.99993 * 3 2 1 7 7 C 1.37878 * 120.00555 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99875 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99666 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.64430 * 56.85566 * 9 7 2 11 11 C 1.55165 * 110.71834 * 179.97438 * 9 7 2 12 12 C 1.54912 * 101.58047 * 154.03887 * 11 9 7 13 13 N 1.47426 * 104.83349 * 322.99211 * 12 11 9 14 14 C 1.34773 * 125.64885 * 204.09503 * 13 12 11 15 15 O 1.21588 * 120.00151 * 179.74878 * 14 13 12 16 16 N 1.34784 * 119.99935 * 0.02562 * 14 13 12 17 17 C 1.46499 * 119.99893 * 179.72905 * 16 14 13 18 18 C 1.50699 * 109.46700 * 180.02562 * 17 16 14 19 19 C 1.36112 * 120.12279 * 259.99780 * 18 17 16 20 20 C 1.39321 * 121.06446 * 180.02562 * 19 18 17 21 21 C 1.36167 * 120.86925 * 359.97438 * 20 19 18 22 22 C 1.40385 * 119.61824 * 0.02562 * 21 20 19 23 23 C 1.40780 * 121.39171 * 180.02562 * 22 21 20 24 24 C 1.36570 * 118.14998 * 179.97438 * 23 22 21 25 25 C 1.39332 * 119.94699 * 359.97438 * 24 23 22 26 26 N 1.31080 * 121.74910 * 0.02562 * 25 24 23 27 27 C 1.33692 * 121.31887 * 359.69903 * 26 25 24 28 28 C 1.47020 * 108.70406 * 24.35394 * 13 12 11 29 29 H 0.96996 * 120.00741 * 0.02562 * 1 2 3 30 30 H 0.96704 * 113.99906 * 303.13794 * 10 9 7 31 31 H 1.08997 * 111.00346 * 35.96876 * 11 9 7 32 32 H 1.09000 * 111.03483 * 272.12454 * 11 9 7 33 33 H 1.08996 * 110.36397 * 204.15001 * 12 11 9 34 34 H 1.09005 * 110.36585 * 81.82813 * 12 11 9 35 35 H 0.97005 * 119.99846 * 359.72693 * 16 14 13 36 36 H 1.08998 * 109.47134 * 299.99552 * 17 16 14 37 37 H 1.08994 * 109.47397 * 59.99843 * 17 16 14 38 38 H 1.07996 * 119.46964 * 359.97438 * 19 18 17 39 39 H 1.07997 * 119.56261 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.19240 * 179.97438 * 21 20 19 41 41 H 1.07995 * 120.92281 * 359.94949 * 23 22 21 42 42 H 1.08003 * 120.02403 * 180.02562 * 24 23 22 43 43 H 1.08000 * 119.12869 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.88041 * 118.13096 * 28 13 12 45 45 H 1.08997 * 109.88501 * 239.29737 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.3665 -2.5701 -1.1195 11 6 2.2336 -3.7001 0.0005 12 6 1.3744 -4.8047 0.6649 13 7 0.5908 -4.1032 1.6980 14 6 0.0660 -4.6672 2.8038 15 8 -0.5615 -3.9881 3.5933 16 7 0.2414 -5.9830 3.0372 17 6 -0.3241 -6.5949 4.2422 18 6 0.0127 -8.0636 4.2651 19 6 -0.9124 -8.9828 3.8753 20 6 -0.6222 -10.3453 3.8892 21 6 0.5976 -10.7958 4.2933 22 6 1.5762 -9.8761 4.7022 23 6 2.8497 -10.3005 5.1266 24 6 3.7514 -9.3490 5.5096 25 6 3.3988 -8.0016 5.4726 26 7 2.2122 -7.6098 5.0769 27 6 1.2852 -8.4893 4.6838 28 6 0.4715 -2.6877 1.3191 29 1 -0.4851 0.8399 -0.0004 30 1 -0.2682 -1.8420 -1.1661 31 1 3.1184 -3.4810 0.5982 32 1 2.5105 -3.9790 -1.0161 33 1 2.0143 -5.5597 1.1215 34 1 0.7108 -5.2620 -0.0691 35 1 0.7420 -6.5249 2.4073 36 1 0.0948 -6.1127 5.1254 37 1 -1.4069 -6.4701 4.2393 38 1 -1.8875 -8.6506 3.5509 39 1 -1.3744 -11.0535 3.5744 40 1 0.8107 -11.8546 4.3001 41 1 3.1062 -11.3493 5.1490 42 1 4.7374 -9.6408 5.8401 43 1 4.1224 -7.2602 5.7780 44 1 -0.5775 -2.4305 1.1718 45 1 0.9040 -2.0580 2.0966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591935972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:19 Heat of formation + Delta-G solvation = -16.308430 kcal Electronic energy + Delta-G solvation = -29123.272020 eV Core-core repulsion = 25105.652489 eV Total energy + Delta-G solvation = -4017.619531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17904 -39.50506 -37.68588 -37.18823 -35.01387 -34.19314 -33.12279 -32.11134 -30.85737 -30.75420 -29.73527 -27.78313 -26.28792 -24.70951 -24.27903 -23.85122 -22.49626 -21.17518 -19.61782 -19.36850 -18.54349 -17.71242 -17.19033 -17.10141 -16.79585 -15.76869 -15.30995 -15.04737 -14.90323 -14.57902 -14.49942 -14.42572 -14.14498 -13.73108 -13.48400 -13.26480 -13.04093 -12.85163 -12.79658 -12.44889 -12.07152 -11.98052 -11.78598 -11.56626 -11.55518 -11.33436 -10.99778 -10.81915 -10.74366 -10.58903 -10.47945 -10.10874 -9.66883 -9.53829 -9.28375 -9.06961 -8.69717 -8.61799 -8.52080 -8.25692 -7.65902 -6.24172 -4.32587 0.06054 0.53398 1.64612 2.61806 3.25296 3.31193 3.31823 3.34790 3.86144 3.87518 4.03914 4.19405 4.30699 4.43072 4.50182 4.59762 4.63148 4.76170 4.83743 5.03361 5.05682 5.12964 5.30057 5.45924 5.57732 5.60825 5.72057 5.76282 5.77614 5.85762 5.94596 6.07226 6.09409 6.17093 6.19954 6.26057 6.55378 6.56952 6.78908 6.86321 6.95224 7.08054 7.33093 7.39194 7.69639 7.74099 7.78941 8.07639 8.62765 8.71505 9.24351 9.36074 9.49126 10.83672 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.002538 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.442071 B =11027.521609 C =11517.560853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.587 6.587 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.629 5.629 14 C 0.718 3.282 15 O -0.598 6.598 16 N -0.741 5.741 17 C 0.191 3.809 18 C -0.077 4.077 19 C -0.083 4.083 20 C -0.115 4.115 21 C -0.094 4.094 22 C -0.106 4.106 23 C -0.060 4.060 24 C -0.175 4.175 25 C 0.133 3.867 26 N -0.460 5.460 27 C 0.138 3.862 28 C 0.122 3.878 29 H 0.271 0.729 30 H 0.386 0.614 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.391 0.609 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.160 0.840 44 H 0.061 0.939 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 -23.754 8.619 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.209 3.791 10 O -0.397 6.397 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.366 5.366 14 C 0.420 3.580 15 O -0.477 6.477 16 N -0.397 5.397 17 C 0.067 3.933 18 C -0.079 4.079 19 C -0.103 4.103 20 C -0.133 4.133 21 C -0.113 4.113 22 C -0.108 4.108 23 C -0.086 4.086 24 C -0.195 4.195 25 C -0.040 4.040 26 N -0.168 5.168 27 C 0.016 3.984 28 C -0.001 4.001 29 H 0.081 0.919 30 H 0.238 0.762 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.225 0.775 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.177 0.823 44 H 0.079 0.921 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.984 -22.761 9.105 24.696 hybrid contribution 0.659 0.113 -0.058 0.671 sum 3.643 -22.648 9.047 24.659 Atomic orbital electron populations 1.69564 1.06008 1.28054 1.49851 1.25073 0.95048 0.99755 0.93387 0.86451 0.79528 0.82079 0.78770 1.20026 1.21072 1.20017 1.21481 0.93645 0.90149 1.52242 0.91588 1.19479 0.85868 0.91975 0.81818 1.86066 1.51436 1.53421 1.48788 1.22726 0.97672 0.94946 1.00044 1.22202 0.93772 0.95566 0.90306 1.47894 1.55357 1.12139 1.21247 1.15459 0.79980 0.81215 0.81331 1.90877 1.47122 1.62002 1.47726 1.44984 1.60801 1.08190 1.25744 1.19775 0.98131 0.86559 0.88831 1.19684 0.92009 0.96289 0.99873 1.20957 0.99690 0.92650 0.97008 1.20937 0.97112 0.95663 0.99616 1.21007 0.93016 0.99033 0.98241 1.18852 0.95554 0.94260 1.02123 1.21449 0.91929 1.00267 0.94914 1.21927 1.01094 0.94407 1.02072 1.23065 0.93224 0.94639 0.93093 1.68156 1.01621 1.37284 1.09694 1.18748 0.93718 0.88627 0.97283 1.22870 1.01295 0.76850 0.99059 0.91863 0.76222 0.90632 0.90677 0.92842 0.92165 0.77530 0.90199 0.91178 0.84798 0.85232 0.85237 0.84484 0.84532 0.82314 0.92098 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.28 10.97 55.43 0.61 -23.68 16 2 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.54 -14.29 8.12 -34.44 -0.28 -14.57 16 8 H 0.07 1.72 7.76 -52.49 -0.41 1.31 16 9 C 0.25 6.18 0.86 -89.93 -0.08 6.11 16 10 O -0.59 -15.14 13.07 -35.23 -0.46 -15.60 16 11 C -0.12 -2.38 6.23 -24.58 -0.15 -2.53 16 12 C 0.10 1.94 6.56 -2.53 -0.02 1.93 16 13 N -0.63 -13.72 3.33 -176.23 -0.59 -14.31 16 14 C 0.72 15.45 8.49 -86.91 -0.74 14.71 16 15 O -0.60 -15.12 16.67 5.29 0.09 -15.03 16 16 N -0.74 -12.33 5.51 -66.42 -0.37 -12.69 16 17 C 0.19 2.80 5.47 -5.19 -0.03 2.77 16 18 C -0.08 -0.92 5.26 -104.51 -0.55 -1.47 16 19 C -0.08 -0.78 9.56 -39.94 -0.38 -1.16 16 20 C -0.12 -0.88 9.95 -39.92 -0.40 -1.28 16 21 C -0.09 -0.72 9.77 -39.52 -0.39 -1.11 16 22 C -0.11 -1.03 5.74 -106.80 -0.61 -1.64 16 23 C -0.06 -0.45 9.90 -39.22 -0.39 -0.84 16 24 C -0.18 -1.31 10.03 -39.78 -0.40 -1.71 16 25 C 0.13 1.31 11.15 -17.47 -0.19 1.11 16 26 N -0.46 -5.99 9.60 -10.97 -0.11 -6.09 16 27 C 0.14 1.68 6.59 -84.85 -0.56 1.12 16 28 C 0.12 3.07 5.54 -3.06 -0.02 3.05 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 10.26 6.98 45.56 0.32 10.58 16 31 H 0.08 1.50 8.03 -51.93 -0.42 1.09 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.05 0.84 7.30 -51.93 -0.38 0.46 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.39 5.87 6.95 -40.82 -0.28 5.59 16 36 H 0.08 1.31 7.87 -51.93 -0.41 0.91 16 37 H 0.07 1.00 7.97 -51.93 -0.41 0.58 16 38 H 0.13 1.07 8.00 -52.49 -0.42 0.65 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 43 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 44 H 0.06 1.67 8.07 -51.93 -0.42 1.25 16 45 H 0.06 1.73 7.82 -51.93 -0.41 1.32 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -33.04 376.15 -10.78 -43.82 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -5.33 Total: 15.91 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -5.27 Total: 6.25 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.45 Total: -56.77 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.37 Total: -30.63 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.04 -10.78 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591935972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.507 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds