Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99534 * 2 1 4 4 H 1.48505 * 109.47154 * 239.99637 * 3 2 1 5 5 H 1.48500 * 109.47135 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46829 * 119.99993 * 3 2 1 7 7 C 1.37878 * 120.00555 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99875 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99666 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.64430 * 56.85566 * 9 7 2 11 11 C 1.55165 * 110.71834 * 179.97438 * 9 7 2 12 12 C 1.54912 * 101.58047 * 154.03887 * 11 9 7 13 13 N 1.47426 * 104.83349 * 322.99211 * 12 11 9 14 14 C 1.34773 * 125.64885 * 204.09503 * 13 12 11 15 15 O 1.21588 * 120.00151 * 179.74878 * 14 13 12 16 16 N 1.34784 * 119.99935 * 0.02562 * 14 13 12 17 17 C 1.46499 * 119.99893 * 179.72905 * 16 14 13 18 18 C 1.50699 * 109.46700 * 180.02562 * 17 16 14 19 19 C 1.36112 * 120.12279 * 259.99780 * 18 17 16 20 20 C 1.39321 * 121.06446 * 180.02562 * 19 18 17 21 21 C 1.36167 * 120.86925 * 359.97438 * 20 19 18 22 22 C 1.40385 * 119.61824 * 0.02562 * 21 20 19 23 23 C 1.40780 * 121.39171 * 180.02562 * 22 21 20 24 24 C 1.36570 * 118.14998 * 179.97438 * 23 22 21 25 25 C 1.39332 * 119.94699 * 359.97438 * 24 23 22 26 26 N 1.31080 * 121.74910 * 0.02562 * 25 24 23 27 27 C 1.33692 * 121.31887 * 359.69903 * 26 25 24 28 28 C 1.47020 * 108.70406 * 24.35394 * 13 12 11 29 29 H 0.96996 * 120.00741 * 0.02562 * 1 2 3 30 30 H 0.96704 * 113.99906 * 303.13794 * 10 9 7 31 31 H 1.08997 * 111.00346 * 35.96876 * 11 9 7 32 32 H 1.09000 * 111.03483 * 272.12454 * 11 9 7 33 33 H 1.08996 * 110.36397 * 204.15001 * 12 11 9 34 34 H 1.09005 * 110.36585 * 81.82813 * 12 11 9 35 35 H 0.97005 * 119.99846 * 359.72693 * 16 14 13 36 36 H 1.08998 * 109.47134 * 299.99552 * 17 16 14 37 37 H 1.08994 * 109.47397 * 59.99843 * 17 16 14 38 38 H 1.07996 * 119.46964 * 359.97438 * 19 18 17 39 39 H 1.07997 * 119.56261 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.19240 * 179.97438 * 21 20 19 41 41 H 1.07995 * 120.92281 * 359.94949 * 23 22 21 42 42 H 1.08003 * 120.02403 * 180.02562 * 24 23 22 43 43 H 1.08000 * 119.12869 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.88041 * 118.13096 * 28 13 12 45 45 H 1.08997 * 109.88501 * 239.29737 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.3665 -2.5701 -1.1195 11 6 2.2336 -3.7001 0.0005 12 6 1.3744 -4.8047 0.6649 13 7 0.5908 -4.1032 1.6980 14 6 0.0660 -4.6672 2.8038 15 8 -0.5615 -3.9881 3.5933 16 7 0.2414 -5.9830 3.0372 17 6 -0.3241 -6.5949 4.2422 18 6 0.0127 -8.0636 4.2651 19 6 -0.9124 -8.9828 3.8753 20 6 -0.6222 -10.3453 3.8892 21 6 0.5976 -10.7958 4.2933 22 6 1.5762 -9.8761 4.7022 23 6 2.8497 -10.3005 5.1266 24 6 3.7514 -9.3490 5.5096 25 6 3.3988 -8.0016 5.4726 26 7 2.2122 -7.6098 5.0769 27 6 1.2852 -8.4893 4.6838 28 6 0.4715 -2.6877 1.3191 29 1 -0.4851 0.8399 -0.0004 30 1 -0.2682 -1.8420 -1.1661 31 1 3.1184 -3.4810 0.5982 32 1 2.5105 -3.9790 -1.0161 33 1 2.0143 -5.5597 1.1215 34 1 0.7108 -5.2620 -0.0691 35 1 0.7420 -6.5249 2.4073 36 1 0.0948 -6.1127 5.1254 37 1 -1.4069 -6.4701 4.2393 38 1 -1.8875 -8.6506 3.5509 39 1 -1.3744 -11.0535 3.5744 40 1 0.8107 -11.8546 4.3001 41 1 3.1062 -11.3493 5.1490 42 1 4.7374 -9.6408 5.8401 43 1 4.1224 -7.2602 5.7780 44 1 -0.5775 -2.4305 1.1718 45 1 0.9040 -2.0580 2.0966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591935972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = -39.756011 kcal Electronic energy + Delta-G solvation = -29124.288783 eV Core-core repulsion = 25105.652489 eV Total energy + Delta-G solvation = -4018.636294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.90596 -41.18132 -39.21486 -38.19581 -36.16783 -36.10319 -34.17334 -34.11594 -32.00110 -31.48217 -31.12902 -29.61636 -27.67648 -26.32113 -25.06317 -24.51694 -24.15419 -22.00840 -21.44468 -21.04895 -19.36101 -19.17040 -18.95544 -17.90105 -17.70466 -17.37740 -16.89952 -16.79524 -16.19825 -15.71795 -15.68214 -15.29491 -15.25974 -14.90881 -14.79725 -14.70554 -14.58984 -14.08804 -13.91966 -13.74535 -13.49435 -13.49025 -13.27443 -12.83931 -12.71970 -12.56106 -12.50834 -12.32786 -12.31911 -12.20553 -12.11513 -11.55292 -11.29888 -11.20290 -10.64203 -10.36764 -10.31095 -10.24652 -9.72642 -9.41914 -9.21666 -8.27019 -6.43185 -0.59235 -0.12056 0.94662 1.42278 1.43627 1.51634 1.71711 2.04814 2.12932 2.37882 2.99092 3.01927 3.24641 3.35741 3.47829 3.78159 3.79703 3.90026 4.04632 4.07755 4.09010 4.14671 4.27200 4.34426 4.37082 4.49078 4.54338 4.58575 4.66416 4.69172 4.86180 5.01366 5.04840 5.10165 5.14544 5.15496 5.22438 5.34114 5.40791 5.45314 5.47538 5.48276 5.62731 5.74900 5.92663 5.99901 6.13765 6.63039 7.00759 7.03749 7.28597 7.38049 7.53739 8.79295 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.002538 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.442071 B =11027.521609 C =11517.560853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.236 3.764 10 O -0.588 6.588 11 C -0.109 4.109 12 C 0.111 3.889 13 N -0.634 5.634 14 C 0.712 3.288 15 O -0.644 6.644 16 N -0.717 5.717 17 C 0.197 3.803 18 C -0.108 4.108 19 C -0.073 4.073 20 C -0.121 4.121 21 C -0.080 4.080 22 C -0.123 4.123 23 C -0.053 4.053 24 C -0.175 4.175 25 C 0.121 3.879 26 N -0.512 5.512 27 C 0.115 3.885 28 C 0.139 3.861 29 H 0.272 0.728 30 H 0.378 0.622 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.402 0.598 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.143 0.857 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.175 0.825 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.027 0.973 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.322 -27.455 8.305 29.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.597 4.597 8 H 0.087 0.913 9 C 0.195 3.805 10 O -0.398 6.398 11 C -0.147 4.147 12 C -0.011 4.011 13 N -0.371 5.371 14 C 0.414 3.586 15 O -0.527 6.527 16 N -0.373 5.373 17 C 0.074 3.926 18 C -0.109 4.109 19 C -0.093 4.093 20 C -0.139 4.139 21 C -0.098 4.098 22 C -0.125 4.125 23 C -0.078 4.078 24 C -0.195 4.195 25 C -0.051 4.051 26 N -0.220 5.220 27 C -0.006 4.006 28 C 0.015 3.985 29 H 0.081 0.919 30 H 0.229 0.771 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.238 0.762 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.161 0.839 39 H 0.179 0.821 40 H 0.184 0.816 41 H 0.193 0.807 42 H 0.187 0.813 43 H 0.186 0.814 44 H 0.045 0.955 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.694 -26.535 8.778 28.340 hybrid contribution 0.149 1.157 0.105 1.172 sum 4.842 -25.377 8.883 27.320 Atomic orbital electron populations 1.69673 1.07173 1.28675 1.50190 1.25853 0.95840 1.02950 0.93003 0.85486 0.78330 0.78195 0.78898 1.19032 1.20845 1.19929 1.21817 0.93992 0.91323 1.52521 0.91344 1.19672 0.86299 0.93510 0.80970 1.86054 1.51453 1.53041 1.49216 1.22714 0.97036 0.93486 1.01472 1.22337 0.93733 0.95343 0.89727 1.47843 1.55976 1.11130 1.22141 1.15695 0.79635 0.82462 0.80762 1.90834 1.49124 1.63506 1.49235 1.44855 1.59787 1.06271 1.26360 1.19720 0.97491 0.88719 0.86695 1.19449 0.93442 0.94447 1.03603 1.21185 0.99357 0.93463 0.95321 1.21268 0.98124 0.95030 0.99444 1.21461 0.92143 1.00444 0.95777 1.19165 0.97226 0.93441 1.02708 1.21917 0.90734 1.02100 0.93074 1.22229 1.02604 0.93179 1.01480 1.23459 0.92640 0.96515 0.92519 1.68097 1.03096 1.38884 1.11971 1.18934 0.93586 0.90028 0.98073 1.22408 0.98878 0.78604 0.98598 0.91899 0.77071 0.90030 0.88958 0.89200 0.91066 0.76230 0.92913 0.91381 0.83882 0.82091 0.81615 0.80732 0.81303 0.81354 0.95494 0.95306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.34 10.97 21.45 0.24 -51.11 16 2 C 0.02 1.30 5.28 84.66 0.45 1.75 16 3 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.56 -30.18 8.12 25.60 0.21 -29.97 16 8 H 0.07 3.57 7.76 -2.91 -0.02 3.55 16 9 C 0.24 11.92 0.86 -10.35 -0.01 11.91 16 10 O -0.59 -30.88 13.07 -148.98 -1.95 -32.83 16 11 C -0.11 -4.38 6.23 31.99 0.20 -4.18 16 12 C 0.11 3.96 6.56 86.86 0.57 4.53 16 13 N -0.63 -28.31 3.33 -829.72 -2.76 -31.07 16 14 C 0.71 31.82 8.49 179.05 1.52 33.34 16 15 O -0.64 -34.51 16.67 -3.99 -0.07 -34.58 16 16 N -0.72 -24.40 5.51 -482.30 -2.66 -27.06 16 17 C 0.20 6.08 5.47 85.63 0.47 6.54 16 18 C -0.11 -2.58 5.26 -19.79 -0.10 -2.68 16 19 C -0.07 -1.27 9.56 22.04 0.21 -1.06 16 20 C -0.12 -1.43 9.95 22.05 0.22 -1.21 16 21 C -0.08 -0.90 9.77 22.31 0.22 -0.69 16 22 C -0.12 -2.07 5.74 -21.28 -0.12 -2.20 16 23 C -0.05 -0.61 9.90 22.50 0.22 -0.38 16 24 C -0.18 -2.15 10.03 22.14 0.22 -1.93 16 25 C 0.12 2.30 11.15 85.07 0.95 3.25 16 26 N -0.51 -13.55 9.60 -188.63 -1.81 -15.36 16 27 C 0.12 2.75 6.59 40.29 0.27 3.01 16 28 C 0.14 7.36 5.54 86.73 0.48 7.84 16 29 H 0.27 14.54 8.31 -92.71 -0.77 13.76 16 30 H 0.38 20.84 6.98 -74.05 -0.52 20.33 16 31 H 0.08 3.15 8.03 -2.39 -0.02 3.13 16 32 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 33 H 0.09 2.59 7.30 -2.39 -0.02 2.57 16 34 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.40 11.88 6.95 -92.70 -0.64 11.23 16 36 H 0.05 1.89 7.87 -2.39 -0.02 1.87 16 37 H 0.07 2.06 7.97 -2.39 -0.02 2.05 16 38 H 0.14 2.10 8.00 -2.91 -0.02 2.08 16 39 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 41 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 42 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 44 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 45 H 0.03 1.68 7.82 -2.39 -0.02 1.66 16 Total: -1.00 -76.65 376.15 -1.14 -77.79 By element: Atomic # 1 Polarization: 41.37 SS G_CDS: -0.12 Total: 41.25 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: 5.97 Total: 27.88 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -6.99 Total: -124.59 kcal Atomic # 8 Polarization: -65.39 SS G_CDS: -2.01 Total: -67.40 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -76.65 -1.14 -77.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591935972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.038 kcal (2) G-P(sol) polarization free energy of solvation -76.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds