Wall clock time and date at job start Sat Apr 11 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48498 * 109.47437 * 274.13705 * 3 2 1 5 5 H 1.48500 * 109.47068 * 34.14201 * 3 2 1 6 6 H 1.48503 * 109.47140 * 154.13431 * 3 2 1 7 7 C 1.37879 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00393 * 4.27996 * 7 2 1 9 9 C 1.50700 * 119.99628 * 184.28125 * 7 2 1 10 10 H 1.09000 * 109.50024 * 334.54086 * 9 7 2 11 11 C 1.53037 * 109.52387 * 214.45955 * 9 7 2 12 12 C 1.53039 * 109.54137 * 178.66997 * 11 9 7 13 13 C 1.52759 * 109.38723 * 61.23631 * 12 11 9 14 14 N 1.46926 * 109.00906 * 305.59770 * 13 12 11 15 15 C 1.34775 * 120.62811 * 233.58041 * 14 13 12 16 16 O 1.21370 * 120.00051 * 171.02166 * 15 14 13 17 17 C 1.49309 * 120.00014 * 351.02464 * 15 14 13 18 18 O 1.21385 * 119.99861 * 353.38924 * 17 15 14 19 19 N 1.34780 * 119.99996 * 173.38829 * 17 15 14 20 20 C 1.39522 * 119.99841 * 183.63778 * 19 17 15 21 21 C 1.38430 * 120.25017 * 326.95253 * 20 19 17 22 22 C 1.38653 * 120.28842 * 180.02562 * 21 20 19 23 23 C 1.37820 * 120.75224 * 0.28035 * 22 21 20 24 24 C 1.39169 * 120.07326 * 359.44544 * 23 22 21 25 25 N 1.37712 * 133.36892 * 180.16540 * 24 23 22 26 26 H 0.97000 * 125.07500 * 0.32809 * 25 24 23 27 27 C 1.36888 * 109.86088 * 180.35189 * 25 24 23 28 28 C 1.34274 * 109.88869 * 359.97438 * 27 25 24 29 29 C 1.40225 * 120.24740 * 146.98165 * 20 19 17 30 30 C 1.46933 * 118.74248 * 53.30101 * 14 13 12 31 31 H 0.97002 * 119.99858 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.46240 * 298.68709 * 11 9 7 33 33 H 1.09000 * 109.46013 * 58.66436 * 11 9 7 34 34 H 1.08995 * 109.50331 * 181.31861 * 12 11 9 35 35 H 1.09009 * 109.49938 * 301.41332 * 12 11 9 36 36 H 1.08997 * 109.51737 * 185.70970 * 13 12 11 37 37 H 1.09003 * 109.43018 * 65.42518 * 13 12 11 38 38 H 0.96999 * 120.00177 * 3.64301 * 19 17 15 39 39 H 1.08001 * 119.85352 * 0.04871 * 21 20 19 40 40 H 1.07998 * 119.62124 * 180.02562 * 22 21 20 41 41 H 1.07995 * 119.95949 * 179.70637 * 23 22 21 42 42 H 1.08005 * 125.06270 * 180.02562 * 27 25 24 43 43 H 1.07994 * 126.50607 * 180.02562 * 28 27 25 44 44 H 1.09001 * 109.58505 * 66.43262 * 30 14 13 45 45 H 1.09001 * 109.58521 * 186.71622 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4092 2.0970 -1.3964 5 1 1.4931 2.6258 0.7858 6 1 3.5877 1.4165 0.6108 7 6 2.0045 -1.1941 -0.0005 8 1 1.4668 -2.1281 -0.0707 9 6 3.5083 -1.1959 0.0969 10 1 3.8988 -0.2527 -0.2850 11 6 4.0729 -2.3542 -0.7288 12 6 5.6015 -2.3365 -0.6570 13 6 6.0431 -2.5165 0.7942 14 7 5.3878 -1.4963 1.6239 15 6 6.1147 -0.6906 2.4233 16 8 5.5865 0.2510 2.9777 17 6 7.5698 -0.9564 2.6267 18 8 8.0724 -1.9631 2.1711 19 7 8.3253 -0.0786 3.3160 20 6 9.6990 -0.2882 3.4414 21 6 10.2047 -1.5750 3.5103 22 6 11.5696 -1.7843 3.6354 23 6 12.4428 -0.7199 3.6989 24 6 11.9601 0.5834 3.6260 25 7 12.5664 1.8195 3.6573 26 1 13.5211 1.9702 3.7396 27 6 11.6208 2.8040 3.5553 28 6 10.3992 2.2556 3.4563 29 6 10.5777 0.8030 3.4991 30 6 3.9256 -1.3668 1.5610 31 1 -0.4850 0.8401 -0.0004 32 1 3.7017 -3.2986 -0.3309 33 1 3.7571 -2.2481 -1.7666 34 1 6.0037 -3.1475 -1.2642 35 1 5.9724 -1.3825 -1.0318 36 1 7.1251 -2.4032 0.8623 37 1 5.7551 -3.5092 1.1404 38 1 7.9140 0.6988 3.7251 39 1 9.5330 -2.4197 3.4661 40 1 11.9524 -2.7927 3.6878 41 1 13.5031 -0.8975 3.8012 42 1 11.8267 3.8643 3.5538 43 1 9.4628 2.7853 3.3629 44 1 3.4614 -2.2638 1.9709 45 1 3.6107 -0.4966 2.1369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595083583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:45 Heat of formation + Delta-G solvation = 9.134123 kcal Electronic energy + Delta-G solvation = -29360.755596 eV Core-core repulsion = 25344.239336 eV Total energy + Delta-G solvation = -4016.516259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.65766 -40.78062 -38.90601 -37.18028 -36.97452 -34.95858 -33.26482 -31.90294 -31.41307 -30.51501 -29.49946 -28.71649 -26.17137 -25.18475 -23.87117 -22.34053 -22.23632 -21.83712 -20.79458 -20.09202 -19.16750 -18.58670 -17.44051 -17.08915 -16.76806 -16.25162 -15.98503 -15.69877 -15.25261 -14.99337 -14.77876 -14.42985 -14.17070 -14.01131 -13.63567 -13.61761 -13.35880 -13.22480 -12.91147 -12.60100 -12.52028 -12.31288 -12.22656 -11.96664 -11.63944 -11.42357 -11.11266 -10.84046 -10.77889 -10.60058 -10.44022 -10.09355 -9.67496 -9.57066 -9.43218 -9.18569 -8.82937 -8.59489 -8.46495 -8.16636 -7.66526 -6.12845 -4.14028 0.72461 1.38247 1.62471 2.38598 2.47042 2.84704 3.28932 3.30797 3.40404 3.48260 3.64396 3.72650 4.39165 4.41535 4.47572 4.65537 4.89215 4.98229 5.11868 5.18662 5.25932 5.37015 5.44572 5.50572 5.64578 5.69802 5.73990 5.96658 6.03903 6.11691 6.18470 6.21323 6.30260 6.38037 6.40993 6.45784 6.51182 6.57024 6.64339 6.77523 6.81833 6.92684 7.04849 7.22063 7.25337 7.33995 7.60704 7.70691 7.79005 8.19321 8.47099 8.92599 9.50296 10.99395 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.002863 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.012011 B = 9777.385838 C =10814.371454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.870 3.130 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.256 1.256 7 C -0.513 4.513 8 H 0.076 0.924 9 C 0.004 3.996 10 H 0.038 0.962 11 C -0.106 4.106 12 C -0.138 4.138 13 C 0.072 3.928 14 N -0.568 5.568 15 C 0.498 3.502 16 O -0.527 6.527 17 C 0.511 3.489 18 O -0.493 6.493 19 N -0.641 5.641 20 C 0.190 3.810 21 C -0.152 4.152 22 C -0.076 4.076 23 C -0.149 4.149 24 C 0.113 3.887 25 N -0.597 5.597 26 H 0.416 0.584 27 C 0.048 3.952 28 C -0.199 4.199 29 C -0.129 4.129 30 C 0.109 3.891 31 H 0.265 0.735 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.127 0.873 37 H 0.066 0.934 38 H 0.423 0.577 39 H 0.144 0.856 40 H 0.130 0.870 41 H 0.120 0.880 42 H 0.171 0.829 43 H 0.147 0.853 44 H 0.069 0.931 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.252 0.919 7.631 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.697 3.303 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.551 4.551 8 H 0.094 0.906 9 C -0.015 4.015 10 H 0.056 0.944 11 C -0.144 4.144 12 C -0.176 4.176 13 C -0.050 4.050 14 N -0.300 5.300 15 C 0.279 3.721 16 O -0.405 6.405 17 C 0.295 3.705 18 O -0.368 6.368 19 N -0.286 5.286 20 C 0.094 3.906 21 C -0.173 4.173 22 C -0.096 4.096 23 C -0.170 4.170 24 C 0.006 3.994 25 N -0.200 5.200 26 H 0.252 0.748 27 C -0.078 4.078 28 C -0.224 4.224 29 C -0.136 4.136 30 C -0.011 4.011 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.085 0.915 38 H 0.261 0.739 39 H 0.162 0.838 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.188 0.812 43 H 0.165 0.835 44 H 0.087 0.913 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 27.150 0.871 7.579 28.201 hybrid contribution 0.487 1.462 0.147 1.548 sum 27.637 2.333 7.726 28.792 Atomic orbital electron populations 1.69905 1.06356 1.27156 1.49715 1.25088 0.94703 0.99095 0.93890 0.86920 0.81188 0.83766 0.78413 1.20409 1.21292 1.17984 1.20891 0.88462 0.94687 1.51101 0.90589 1.19527 0.96951 0.95164 0.89906 0.94377 1.21604 0.92049 0.99844 1.00929 1.21949 0.98602 1.01495 0.95539 1.22661 1.01266 0.90768 0.90260 1.48449 1.09214 1.33290 1.39058 1.19686 0.86411 0.83939 0.82032 1.90763 1.71977 1.28276 1.49508 1.20732 0.88388 0.83360 0.78050 1.90496 1.73569 1.25997 1.46784 1.43125 1.06044 1.27799 1.51621 1.17124 0.81411 0.92579 0.99448 1.21131 0.96046 0.95773 1.04368 1.20701 0.92330 0.98237 0.98352 1.20000 0.99761 0.88947 1.08300 1.17972 0.91370 0.86635 1.03467 1.41785 1.09120 1.03979 1.65161 0.74756 1.21808 0.88136 0.93849 1.04006 1.21663 0.97768 0.91289 1.11683 1.18871 0.91987 0.92993 1.09718 1.22692 0.74126 1.02424 1.01852 0.92520 0.92698 0.92188 0.91500 0.92431 0.85571 0.91526 0.73915 0.83802 0.85201 0.86218 0.81154 0.83531 0.91281 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.96 55.43 0.77 -26.20 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.84 27.26 -169.99 -4.63 17.21 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.39 6.43 56.52 0.36 -6.03 16 7 C -0.51 -13.96 8.87 -34.44 -0.31 -14.27 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 C 0.00 0.10 1.86 -91.65 -0.17 -0.07 16 10 H 0.04 0.92 5.14 -51.93 -0.27 0.66 16 11 C -0.11 -2.05 5.15 -26.69 -0.14 -2.19 16 12 C -0.14 -2.22 6.06 -26.83 -0.16 -2.38 16 13 C 0.07 1.15 5.95 -3.93 -0.02 1.13 16 14 N -0.57 -10.64 2.98 -173.58 -0.52 -11.16 16 15 C 0.50 9.11 7.73 -11.65 -0.09 9.02 16 16 O -0.53 -10.85 15.92 5.48 0.09 -10.76 16 17 C 0.51 7.88 7.58 -11.65 -0.09 7.79 16 18 O -0.49 -7.68 10.52 5.47 0.06 -7.62 16 19 N -0.64 -8.58 5.33 -10.16 -0.05 -8.63 16 20 C 0.19 2.43 6.36 -83.54 -0.53 1.90 16 21 C -0.15 -1.84 8.70 -39.36 -0.34 -2.18 16 22 C -0.08 -0.74 10.00 -39.58 -0.40 -1.14 16 23 C -0.15 -1.34 10.06 -39.39 -0.40 -1.74 16 24 C 0.11 1.14 7.27 -84.01 -0.61 0.53 16 25 N -0.60 -4.29 6.07 -10.64 -0.06 -4.35 16 26 H 0.42 1.62 8.96 -40.82 -0.37 1.25 16 27 C 0.05 0.35 11.82 -16.69 -0.20 0.15 16 28 C -0.20 -1.96 11.08 -37.69 -0.42 -2.38 16 29 C -0.13 -1.52 6.29 -104.99 -0.66 -2.18 16 30 C 0.11 2.35 5.71 -3.71 -0.02 2.33 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 36 H 0.13 1.96 4.33 -54.72 -0.24 1.72 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.42 5.22 8.30 -40.82 -0.34 4.88 16 39 H 0.14 1.85 6.08 -52.49 -0.32 1.53 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 45 H 0.08 1.99 7.00 -51.93 -0.36 1.62 16 LS Contribution 365.92 15.07 5.51 5.51 Total: -1.00 -33.18 365.92 -9.20 -42.38 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.72 Total: 7.27 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -4.65 Total: -3.65 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.14 Total: -50.35 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.14 Total: -18.38 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.63 Total: 17.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.18 -9.20 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595083583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.518 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds