Wall clock time and date at job start Sat Apr 11 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48498 * 109.47437 * 274.13705 * 3 2 1 5 5 H 1.48500 * 109.47068 * 34.14201 * 3 2 1 6 6 H 1.48503 * 109.47140 * 154.13431 * 3 2 1 7 7 C 1.37879 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00393 * 4.27996 * 7 2 1 9 9 C 1.50700 * 119.99628 * 184.28125 * 7 2 1 10 10 H 1.09000 * 109.50024 * 334.54086 * 9 7 2 11 11 C 1.53037 * 109.52387 * 214.45955 * 9 7 2 12 12 C 1.53039 * 109.54137 * 178.66997 * 11 9 7 13 13 C 1.52759 * 109.38723 * 61.23631 * 12 11 9 14 14 N 1.46926 * 109.00906 * 305.59770 * 13 12 11 15 15 C 1.34775 * 120.62811 * 233.58041 * 14 13 12 16 16 O 1.21370 * 120.00051 * 171.02166 * 15 14 13 17 17 C 1.49309 * 120.00014 * 351.02464 * 15 14 13 18 18 O 1.21385 * 119.99861 * 353.38924 * 17 15 14 19 19 N 1.34780 * 119.99996 * 173.38829 * 17 15 14 20 20 C 1.39522 * 119.99841 * 183.63778 * 19 17 15 21 21 C 1.38430 * 120.25017 * 326.95253 * 20 19 17 22 22 C 1.38653 * 120.28842 * 180.02562 * 21 20 19 23 23 C 1.37820 * 120.75224 * 0.28035 * 22 21 20 24 24 C 1.39169 * 120.07326 * 359.44544 * 23 22 21 25 25 N 1.37712 * 133.36892 * 180.16540 * 24 23 22 26 26 H 0.97000 * 125.07500 * 0.32809 * 25 24 23 27 27 C 1.36888 * 109.86088 * 180.35189 * 25 24 23 28 28 C 1.34274 * 109.88869 * 359.97438 * 27 25 24 29 29 C 1.40225 * 120.24740 * 146.98165 * 20 19 17 30 30 C 1.46933 * 118.74248 * 53.30101 * 14 13 12 31 31 H 0.97002 * 119.99858 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.46240 * 298.68709 * 11 9 7 33 33 H 1.09000 * 109.46013 * 58.66436 * 11 9 7 34 34 H 1.08995 * 109.50331 * 181.31861 * 12 11 9 35 35 H 1.09009 * 109.49938 * 301.41332 * 12 11 9 36 36 H 1.08997 * 109.51737 * 185.70970 * 13 12 11 37 37 H 1.09003 * 109.43018 * 65.42518 * 13 12 11 38 38 H 0.96999 * 120.00177 * 3.64301 * 19 17 15 39 39 H 1.08001 * 119.85352 * 0.04871 * 21 20 19 40 40 H 1.07998 * 119.62124 * 180.02562 * 22 21 20 41 41 H 1.07995 * 119.95949 * 179.70637 * 23 22 21 42 42 H 1.08005 * 125.06270 * 180.02562 * 27 25 24 43 43 H 1.07994 * 126.50607 * 180.02562 * 28 27 25 44 44 H 1.09001 * 109.58505 * 66.43262 * 30 14 13 45 45 H 1.09001 * 109.58521 * 186.71622 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4092 2.0970 -1.3964 5 1 1.4931 2.6258 0.7858 6 1 3.5877 1.4165 0.6108 7 6 2.0045 -1.1941 -0.0005 8 1 1.4668 -2.1281 -0.0707 9 6 3.5083 -1.1959 0.0969 10 1 3.8988 -0.2527 -0.2850 11 6 4.0729 -2.3542 -0.7288 12 6 5.6015 -2.3365 -0.6570 13 6 6.0431 -2.5165 0.7942 14 7 5.3878 -1.4963 1.6239 15 6 6.1147 -0.6906 2.4233 16 8 5.5865 0.2510 2.9777 17 6 7.5698 -0.9564 2.6267 18 8 8.0724 -1.9631 2.1711 19 7 8.3253 -0.0786 3.3160 20 6 9.6990 -0.2882 3.4414 21 6 10.2047 -1.5750 3.5103 22 6 11.5696 -1.7843 3.6354 23 6 12.4428 -0.7199 3.6989 24 6 11.9601 0.5834 3.6260 25 7 12.5664 1.8195 3.6573 26 1 13.5211 1.9702 3.7396 27 6 11.6208 2.8040 3.5553 28 6 10.3992 2.2556 3.4563 29 6 10.5777 0.8030 3.4991 30 6 3.9256 -1.3668 1.5610 31 1 -0.4850 0.8401 -0.0004 32 1 3.7017 -3.2986 -0.3309 33 1 3.7571 -2.2481 -1.7666 34 1 6.0037 -3.1475 -1.2642 35 1 5.9724 -1.3825 -1.0318 36 1 7.1251 -2.4032 0.8623 37 1 5.7551 -3.5092 1.1404 38 1 7.9140 0.6988 3.7251 39 1 9.5330 -2.4197 3.4661 40 1 11.9524 -2.7927 3.6878 41 1 13.5031 -0.8975 3.8012 42 1 11.8267 3.8643 3.5538 43 1 9.4628 2.7853 3.3629 44 1 3.4614 -2.2638 1.9709 45 1 3.6107 -0.4966 2.1369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595083583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:44 Heat of formation + Delta-G solvation = -12.773107 kcal Electronic energy + Delta-G solvation = -29361.705564 eV Core-core repulsion = 25344.239336 eV Total energy + Delta-G solvation = -4017.466228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55169 -41.87380 -40.21088 -38.68488 -37.90066 -35.98066 -35.12703 -33.60521 -32.23412 -32.16884 -30.25486 -29.51776 -27.68899 -26.92697 -25.06695 -23.48039 -23.26706 -23.06938 -21.65213 -21.27165 -20.61695 -19.62541 -19.06215 -18.53316 -18.03794 -17.45259 -17.20426 -16.63185 -16.39575 -16.28137 -15.86540 -15.71658 -15.47747 -15.17751 -15.05379 -14.94616 -14.74348 -14.42859 -14.17604 -14.02237 -13.79841 -13.52802 -13.40052 -13.05034 -12.92475 -12.72254 -12.64471 -12.35376 -12.22464 -11.99342 -11.76097 -11.65292 -11.49638 -11.32698 -11.07061 -10.74625 -10.29291 -10.13928 -9.73526 -9.20293 -8.42802 -8.34528 -6.37698 -0.19753 0.42103 0.65339 1.14976 1.27901 1.34058 1.44935 1.78784 1.98900 2.25443 2.29825 2.40018 2.89445 3.03053 3.12334 3.83539 4.00098 4.03606 4.13735 4.16383 4.22386 4.29993 4.43586 4.44660 4.47859 4.55431 4.68467 4.73641 4.78941 4.85199 4.95611 4.99713 5.04479 5.05666 5.20482 5.25684 5.32256 5.37086 5.55397 5.58176 5.61215 5.65188 5.70441 5.75398 5.95720 6.16452 6.21750 6.29251 6.57345 6.71140 6.74449 6.79192 7.29171 8.81563 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.002863 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.012011 B = 9777.385838 C =10814.371454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.509 4.509 8 H 0.045 0.955 9 C 0.003 3.997 10 H 0.027 0.973 11 C -0.103 4.103 12 C -0.129 4.129 13 C 0.072 3.928 14 N -0.573 5.573 15 C 0.495 3.505 16 O -0.556 6.556 17 C 0.518 3.482 18 O -0.496 6.496 19 N -0.629 5.629 20 C 0.156 3.844 21 C -0.161 4.161 22 C -0.087 4.087 23 C -0.135 4.135 24 C 0.098 3.902 25 N -0.583 5.583 26 H 0.434 0.566 27 C 0.073 3.927 28 C -0.240 4.240 29 C -0.148 4.148 30 C 0.119 3.881 31 H 0.267 0.733 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.138 0.862 37 H 0.081 0.919 38 H 0.425 0.575 39 H 0.132 0.868 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.211 0.789 43 H 0.146 0.854 44 H 0.072 0.928 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.749 1.334 7.689 32.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.176 4.176 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.182 1.182 7 C -0.548 4.548 8 H 0.063 0.937 9 C -0.017 4.017 10 H 0.045 0.955 11 C -0.141 4.141 12 C -0.167 4.167 13 C -0.048 4.048 14 N -0.304 5.304 15 C 0.278 3.722 16 O -0.436 6.436 17 C 0.301 3.699 18 O -0.372 6.372 19 N -0.273 5.273 20 C 0.062 3.938 21 C -0.183 4.183 22 C -0.106 4.106 23 C -0.155 4.155 24 C -0.011 4.011 25 N -0.188 5.188 26 H 0.274 0.726 27 C -0.053 4.053 28 C -0.265 4.265 29 C -0.155 4.155 30 C -0.002 4.002 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.155 0.845 37 H 0.100 0.900 38 H 0.263 0.737 39 H 0.149 0.851 40 H 0.172 0.828 41 H 0.170 0.830 42 H 0.228 0.772 43 H 0.164 0.836 44 H 0.090 0.910 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 31.725 1.277 7.636 32.656 hybrid contribution -0.791 1.321 0.190 1.552 sum 30.934 2.598 7.826 32.014 Atomic orbital electron populations 1.70023 1.07865 1.28003 1.52077 1.25804 0.95308 1.02347 0.94141 0.85971 0.79636 0.80056 0.78786 1.19166 1.21317 1.18182 1.21152 0.90820 0.93271 1.49532 0.93689 1.19487 0.94241 0.96386 0.91571 0.95463 1.21508 0.94557 0.98175 0.99833 1.21908 0.95771 1.02800 0.96181 1.22873 1.01617 0.90614 0.89706 1.48415 1.08067 1.34117 1.39841 1.20187 0.87745 0.83122 0.81190 1.90739 1.72959 1.29464 1.50434 1.20013 0.87020 0.83938 0.78910 1.90480 1.73116 1.26128 1.47485 1.42982 1.06565 1.27127 1.50649 1.17324 0.80770 0.93534 1.02144 1.21196 0.97191 0.95114 1.04765 1.20983 0.91372 0.99873 0.98395 1.20381 1.01259 0.88223 1.05685 1.18213 0.91007 0.87980 1.03893 1.41840 1.10147 1.02988 1.63810 0.72600 1.22395 0.87120 0.95409 1.00424 1.21855 0.99163 0.90823 1.14613 1.19169 0.92863 0.93650 1.09799 1.22191 0.76427 1.01425 1.00188 0.92413 0.92290 0.92529 0.87861 0.92840 0.84481 0.90047 0.73704 0.85071 0.82772 0.82994 0.77245 0.83641 0.90980 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 2 C 0.02 1.31 5.47 84.66 0.46 1.77 16 3 Si 0.93 46.32 27.26 68.60 1.87 48.19 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.26 -12.79 6.43 99.48 0.64 -12.15 16 7 C -0.51 -28.54 8.87 25.60 0.23 -28.31 16 8 H 0.04 2.74 8.06 -2.91 -0.02 2.72 16 9 C 0.00 0.13 1.86 -11.46 -0.02 0.11 16 10 H 0.03 1.32 5.14 -2.39 -0.01 1.31 16 11 C -0.10 -3.88 5.15 30.62 0.16 -3.72 16 12 C -0.13 -3.85 6.06 30.53 0.19 -3.67 16 13 C 0.07 2.18 5.95 86.22 0.51 2.69 16 14 N -0.57 -21.27 2.98 -821.45 -2.45 -23.72 16 15 C 0.50 18.20 7.73 87.23 0.67 18.88 16 16 O -0.56 -23.40 15.92 -3.31 -0.05 -23.45 16 17 C 0.52 15.91 7.58 87.22 0.66 16.58 16 18 O -0.50 -15.03 10.52 -3.36 -0.04 -15.06 16 19 N -0.63 -16.97 5.33 -304.40 -1.62 -18.59 16 20 C 0.16 3.95 6.36 38.45 0.24 4.20 16 21 C -0.16 -3.79 8.70 22.41 0.20 -3.59 16 22 C -0.09 -1.50 10.00 22.27 0.22 -1.27 16 23 C -0.13 -2.00 10.06 22.39 0.23 -1.78 16 24 C 0.10 1.70 7.27 39.01 0.28 1.99 16 25 N -0.58 -6.30 6.07 -187.58 -1.14 -7.44 16 26 H 0.43 1.53 8.96 -92.71 -0.83 0.70 16 27 C 0.07 0.83 11.82 83.00 0.98 1.82 16 28 C -0.24 -4.41 11.08 23.49 0.26 -4.15 16 29 C -0.15 -3.32 6.29 -20.10 -0.13 -3.44 16 30 C 0.12 5.21 5.71 86.36 0.49 5.70 16 31 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.14 3.98 4.33 -46.49 -0.20 3.77 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.42 10.81 8.30 -92.71 -0.77 10.04 16 39 H 0.13 3.34 6.08 -2.91 -0.02 3.32 16 40 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.21 0.61 8.06 -2.91 -0.02 0.59 16 43 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 44 H 0.07 3.05 8.14 -2.39 -0.02 3.04 16 45 H 0.06 2.82 7.00 -2.39 -0.02 2.80 16 Total: -1.00 -74.68 365.92 1.71 -72.97 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -0.80 Total: 21.58 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 5.64 Total: 3.80 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -4.91 Total: -108.02 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.09 Total: -38.51 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.87 Total: 48.19 kcal Total: -74.68 1.71 -72.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595083583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.193 kcal (2) G-P(sol) polarization free energy of solvation -74.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds