Wall clock time and date at job start Sat Apr 11 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00180 * 2 1 4 4 H 1.48500 * 109.47490 * 270.00202 * 3 2 1 5 5 H 1.48502 * 109.46915 * 30.00484 * 3 2 1 6 6 H 1.48503 * 109.47307 * 149.99943 * 3 2 1 7 7 C 1.37879 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00497 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00022 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47144 * 175.07089 * 9 7 2 11 11 C 1.46904 * 110.99766 * 295.17317 * 10 9 7 12 12 C 1.53237 * 109.33858 * 187.25556 * 11 10 9 13 13 N 1.47082 * 108.52169 * 306.17187 * 12 11 10 14 14 C 1.34780 * 120.88065 * 231.18978 * 13 12 11 15 15 O 1.21637 * 119.99842 * 5.87321 * 14 13 12 16 16 C 1.47136 * 120.00091 * 185.87605 * 14 13 12 17 17 C 1.37942 * 120.55069 * 53.46436 * 16 14 13 18 18 N 1.33957 * 122.20211 * 180.02562 * 17 16 14 19 19 H 0.97005 * 118.59569 * 179.97438 * 18 17 16 20 20 C 1.37794 * 122.80595 * 0.26660 * 18 17 16 21 21 C 1.39278 * 120.52364 * 179.69464 * 20 18 17 22 22 C 1.37733 * 119.97294 * 180.02562 * 21 20 18 23 23 C 1.38790 * 120.72410 * 0.02562 * 22 21 20 24 24 C 1.37721 * 120.29153 * 359.39341 * 23 22 21 25 25 C 1.39491 * 119.60637 * 0.87434 * 24 23 22 26 26 C 1.47148 * 120.55344 * 233.49144 * 16 14 13 27 27 O 1.21856 * 121.40629 * 359.95343 * 26 16 14 28 28 C 1.47076 * 118.24013 * 51.45507 * 13 12 11 29 29 C 1.46894 * 110.99868 * 59.47370 * 10 9 7 30 30 H 0.96998 * 119.99772 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.46933 * 55.07298 * 9 7 2 32 32 H 1.08995 * 109.47427 * 295.07345 * 9 7 2 33 33 H 1.09000 * 109.49433 * 67.29662 * 11 10 9 34 34 H 1.08997 * 109.51525 * 307.22485 * 11 10 9 35 35 H 1.08993 * 109.63048 * 186.45836 * 12 11 10 36 36 H 1.09006 * 109.62991 * 65.87718 * 12 11 10 37 37 H 1.07996 * 118.89977 * 0.02562 * 17 16 14 38 38 H 1.08006 * 120.00708 * 359.97438 * 21 20 18 39 39 H 1.08004 * 119.63660 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.84807 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.19384 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.62928 * 68.25211 * 28 13 12 43 43 H 1.08992 * 109.63323 * 188.83778 * 28 13 12 44 44 H 1.08998 * 109.49557 * 292.70217 * 29 10 9 45 45 H 1.08992 * 109.49692 * 52.79066 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2011 -3.6132 -0.1202 11 6 2.8915 -3.5793 -1.4164 12 6 3.7337 -4.8495 -1.5761 13 7 4.6148 -4.9762 -0.4053 14 6 5.9397 -5.1733 -0.5547 15 8 6.4380 -5.1422 -1.6639 16 6 6.7834 -5.4263 0.6239 17 6 6.4667 -6.4355 1.5094 18 7 7.2108 -6.6943 2.5928 19 1 6.9394 -7.4165 3.1807 20 6 8.3420 -5.9746 2.9108 21 6 9.0772 -6.2807 4.0534 22 6 10.2059 -5.5536 4.3607 23 6 10.6234 -4.5129 3.5429 24 6 9.9185 -4.2004 2.4017 25 6 8.7703 -4.9246 2.0810 26 6 7.9787 -4.6066 0.8781 27 8 8.3012 -3.7037 0.1259 28 6 4.0110 -4.8879 0.9329 29 6 3.1586 -3.6103 0.9938 30 1 -0.4850 0.8400 0.0004 31 1 0.5595 -2.5195 -0.8428 32 1 0.6925 -2.5964 0.9304 33 1 3.5405 -2.7047 -1.4601 34 1 2.1562 -3.5271 -2.2193 35 1 4.3361 -4.7780 -2.4817 36 1 3.0782 -5.7183 -1.6367 37 1 5.5894 -7.0372 1.3229 38 1 8.7619 -7.0875 4.6986 39 1 10.7717 -5.7953 5.2484 40 1 11.5104 -3.9517 3.7976 41 1 10.2451 -3.3905 1.7662 42 1 3.3815 -5.7603 1.1089 43 1 4.7967 -4.8417 1.6869 44 1 3.8039 -2.7353 0.9165 45 1 2.6169 -3.5808 1.9391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602207329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:10 Heat of formation + Delta-G solvation = -8.369940 kcal Electronic energy + Delta-G solvation = -29559.146225 eV Core-core repulsion = 25541.870933 eV Total energy + Delta-G solvation = -4017.275292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.38369 -39.68779 -38.12310 -37.64192 -37.13515 -34.37892 -32.58294 -32.12435 -31.33750 -30.56852 -30.06736 -28.03212 -25.51504 -24.45712 -24.35472 -23.07553 -22.71506 -22.23882 -20.83914 -19.38900 -18.77784 -18.24169 -17.88222 -16.60011 -16.23428 -16.03978 -15.67360 -15.33265 -15.16551 -14.79029 -14.75934 -14.53349 -14.37507 -14.28519 -13.76275 -13.60978 -13.48821 -13.35961 -13.13374 -12.60666 -12.46639 -12.33730 -12.10224 -11.81491 -11.70399 -11.12787 -11.04570 -10.96819 -10.66257 -10.56085 -10.23225 -10.00077 -9.87379 -9.65592 -9.61855 -9.45106 -9.35743 -8.44233 -8.36346 -8.03875 -7.24839 -6.04499 -4.13514 0.41826 0.50201 1.35796 2.35905 2.59967 2.93423 3.29247 3.31372 3.35808 3.40808 3.68926 3.94182 4.16636 4.35387 4.40588 4.41601 4.65541 4.74096 4.87527 4.91644 5.07766 5.21711 5.26248 5.36548 5.42089 5.49043 5.51563 5.55920 5.64158 5.75934 5.91581 5.95186 6.05418 6.13203 6.15918 6.19172 6.42674 6.51861 6.59141 6.64298 6.78559 6.84299 7.21369 7.49294 7.66007 7.75821 7.87718 7.98441 8.19174 8.26502 8.45740 8.96579 9.54273 11.00645 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012798 B = 0.003096 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.368742 B = 9042.740440 C = 9905.590773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.552 4.552 8 H 0.057 0.943 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.049 3.951 12 C 0.117 3.883 13 N -0.605 5.605 14 C 0.584 3.416 15 O -0.532 6.532 16 C -0.314 4.314 17 C 0.202 3.798 18 N -0.598 5.598 19 H 0.422 0.578 20 C 0.184 3.816 21 C -0.170 4.170 22 C -0.060 4.060 23 C -0.155 4.155 24 C -0.030 4.030 25 C -0.182 4.182 26 C 0.434 3.566 27 O -0.462 6.462 28 C 0.108 3.892 29 C 0.049 3.951 30 H 0.262 0.738 31 H 0.036 0.964 32 H 0.029 0.971 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.171 0.829 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.141 0.859 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.464 -18.523 11.955 27.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.591 4.591 8 H 0.075 0.925 9 C 0.063 3.937 10 N -0.264 5.264 11 C -0.080 4.080 12 C -0.005 4.005 13 N -0.339 5.339 14 C 0.372 3.628 15 O -0.408 6.408 16 C -0.326 4.326 17 C 0.070 3.930 18 N -0.206 5.206 19 H 0.258 0.742 20 C 0.083 3.917 21 C -0.191 4.191 22 C -0.079 4.079 23 C -0.174 4.174 24 C -0.049 4.049 25 C -0.186 4.186 26 C 0.316 3.684 27 O -0.340 6.340 28 C -0.015 4.015 29 C -0.080 4.080 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.188 0.812 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.486 -18.290 10.939 26.944 hybrid contribution 0.582 1.483 0.420 1.648 sum 17.068 -16.807 11.358 26.510 Atomic orbital electron populations 1.69936 1.05990 1.26883 1.50135 1.24937 0.94751 0.99152 0.94768 0.86663 0.79950 0.83559 0.78326 1.20522 1.21092 1.19920 1.21764 0.93365 0.92120 1.51819 0.92536 1.19757 0.90684 0.85365 0.97917 1.62509 1.16477 1.46936 1.00507 1.22244 0.96787 0.95456 0.93517 1.21833 0.91712 0.98751 0.88185 1.48121 1.06331 1.71286 1.08155 1.17393 0.81072 0.76713 0.87655 1.90773 1.72738 1.51197 1.26128 1.21836 1.03737 1.05627 1.01421 1.21882 0.92655 0.94518 0.83925 1.40776 1.23109 1.33039 1.23709 0.74181 1.17890 0.87121 0.92053 0.94669 1.20695 0.97750 1.03635 0.96978 1.21115 0.94632 0.93570 0.98597 1.21170 1.01512 0.99230 0.95485 1.21195 0.91434 0.96767 0.95464 1.20248 1.00031 0.99489 0.98865 1.19367 0.82816 0.82685 0.83561 1.90744 1.68668 1.28123 1.46426 1.22130 0.96397 0.99664 0.83332 1.22302 0.94610 0.95024 0.96110 0.92788 0.94627 0.95278 0.93816 0.90328 0.89390 0.91290 0.81213 0.84806 0.84964 0.85002 0.84131 0.91140 0.90675 0.93721 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.55 -15.27 7.76 -34.44 -0.27 -15.54 16 8 H 0.06 1.60 5.88 -52.48 -0.31 1.29 16 9 C 0.19 4.75 5.11 -4.97 -0.03 4.72 16 10 N -0.54 -11.21 4.83 -235.47 -1.14 -12.34 16 11 C 0.05 0.98 5.25 -3.70 -0.02 0.96 16 12 C 0.12 1.97 6.61 -3.60 -0.02 1.95 16 13 N -0.61 -9.86 3.00 -173.55 -0.52 -10.38 16 14 C 0.58 10.33 6.96 -12.65 -0.09 10.24 16 15 O -0.53 -11.54 16.40 5.24 0.09 -11.46 16 16 C -0.31 -4.48 4.79 -102.78 -0.49 -4.97 16 17 C 0.20 1.69 8.89 -16.73 -0.15 1.54 16 18 N -0.60 -3.52 5.21 -10.42 -0.05 -3.57 16 19 H 0.42 0.67 8.73 -40.82 -0.36 0.31 16 20 C 0.18 1.53 6.66 -83.94 -0.56 0.97 16 21 C -0.17 -0.97 9.86 -39.38 -0.39 -1.36 16 22 C -0.06 -0.35 10.01 -39.56 -0.40 -0.74 16 23 C -0.16 -1.15 10.03 -39.57 -0.40 -1.55 16 24 C -0.03 -0.32 9.65 -39.30 -0.38 -0.70 16 25 C -0.18 -2.19 5.89 -104.81 -0.62 -2.81 16 26 C 0.43 7.02 7.14 -32.21 -0.23 6.79 16 27 O -0.46 -9.49 16.87 5.05 0.09 -9.41 16 28 C 0.11 1.51 5.67 -3.36 -0.02 1.49 16 29 C 0.05 0.91 5.17 -3.46 -0.02 0.89 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 1.00 7.11 -51.93 -0.37 0.64 16 34 H 0.08 1.53 8.06 -51.93 -0.42 1.11 16 35 H 0.09 1.54 7.04 -51.93 -0.37 1.17 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.17 0.88 7.67 -52.49 -0.40 0.48 16 38 H 0.13 0.34 8.06 -52.48 -0.42 -0.09 16 39 H 0.13 0.40 8.06 -52.48 -0.42 -0.03 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.14 1.54 7.79 -52.49 -0.41 1.13 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.90 5.53 -51.93 -0.29 0.62 16 44 H 0.04 0.97 6.62 -51.93 -0.34 0.63 16 45 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -38.30 368.86 -10.20 -48.50 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -5.77 Total: -2.13 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -4.17 Total: 3.68 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.98 Total: -51.75 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.17 Total: -20.87 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.30 -10.20 -48.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.132 kcal (2) G-P(sol) polarization free energy of solvation -38.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds