Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31340 * 1 3 3 Si 1.86808 * 119.99734 * 2 1 4 4 H 1.48498 * 109.47145 * 269.99992 * 3 2 1 5 5 H 1.48500 * 109.46892 * 30.00416 * 3 2 1 6 6 H 1.48510 * 109.46798 * 149.99977 * 3 2 1 7 7 C 1.39011 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00421 * 184.58835 * 7 2 1 9 9 N 1.36893 * 119.99472 * 4.58994 * 7 2 1 10 10 C 1.38211 * 125.61689 * 129.06065 * 9 7 2 11 11 C 1.46888 * 125.43868 * 0.03104 * 10 9 7 12 12 O 1.21659 * 120.00241 * 185.32446 * 11 10 9 13 13 N 1.34782 * 119.99796 * 5.32579 * 11 10 9 14 14 C 1.46498 * 119.99812 * 184.87651 * 13 11 10 15 15 H 1.08999 * 109.63073 * 320.89058 * 14 13 11 16 16 C 1.53061 * 109.79769 * 200.39741 * 14 13 11 17 17 C 1.51794 * 110.74641 * 155.28127 * 16 14 13 18 18 C 1.51968 * 113.92476 * 66.80618 * 17 16 14 19 19 C 1.52978 * 110.76132 * 293.15998 * 18 17 16 20 20 N 1.47194 * 108.80245 * 86.32828 * 19 18 17 21 21 C 1.33379 * 120.42554 * 287.98000 * 20 19 18 22 22 O 1.21274 * 119.88663 * 180.28138 * 21 20 19 23 23 C 1.36123 * 109.12580 * 179.77684 * 10 9 7 24 24 C 1.41702 * 107.74878 * 0.21694 * 23 10 9 25 25 C 1.40020 * 133.35087 * 180.02562 * 24 23 10 26 26 C 1.36579 * 119.83072 * 179.97438 * 25 24 23 27 27 C 1.38859 * 120.59900 * 359.97438 * 26 25 24 28 28 C 1.37842 * 120.63328 * 359.97438 * 27 26 25 29 29 C 1.37837 * 125.62173 * 309.23052 * 9 7 2 30 30 H 0.97002 * 120.00616 * 4.99585 * 1 2 3 31 31 H 0.96996 * 120.00031 * 4.87745 * 13 11 10 32 32 H 1.08998 * 109.22294 * 275.61333 * 16 14 13 33 33 H 1.09003 * 109.22010 * 35.00022 * 16 14 13 34 34 H 1.08998 * 108.61679 * 187.92689 * 17 16 14 35 35 H 1.08994 * 108.61556 * 305.68896 * 17 16 14 36 36 H 1.08997 * 109.43367 * 172.72052 * 18 17 16 37 37 H 1.08995 * 109.07784 * 53.37165 * 18 17 16 38 38 H 1.09008 * 109.60866 * 326.49163 * 19 18 17 39 39 H 1.09006 * 109.60660 * 206.16311 * 19 18 17 40 40 H 0.97004 * 119.79174 * 107.96097 * 20 19 18 41 41 H 1.07995 * 126.12698 * 180.20779 * 23 10 9 42 42 H 1.07997 * 120.08604 * 359.95045 * 25 24 23 43 43 H 1.07997 * 119.70486 * 180.02562 * 26 25 24 44 44 H 1.08000 * 119.68487 * 180.02562 * 27 26 25 45 45 H 1.08003 * 120.09157 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4949 2.0465 -1.4001 5 1 1.4448 2.6527 0.7001 6 1 3.5450 1.4402 0.7001 7 6 2.0086 -1.2038 -0.0005 8 1 3.0859 -1.2053 0.0743 9 7 1.3274 -2.3874 -0.0959 10 6 1.5995 -3.4026 -0.9935 11 6 2.6689 -3.3854 -2.0003 12 8 2.7604 -4.2922 -2.8061 13 7 3.5488 -2.3649 -2.0313 14 6 4.5487 -2.2921 -3.0996 15 1 4.9240 -3.2917 -3.3186 16 6 5.7075 -1.3918 -2.6646 17 6 6.9780 -1.7511 -3.4134 18 6 6.9200 -1.4554 -4.9029 19 6 5.9027 -2.3630 -5.5968 20 7 4.5723 -1.7396 -5.5076 21 6 3.9214 -1.7001 -4.3441 22 8 2.8236 -1.1885 -4.2828 23 6 0.7218 -4.4234 -0.7918 24 6 -0.1429 -4.0469 0.2658 25 6 -1.2196 -4.6800 0.8987 26 6 -1.8759 -4.0489 1.9167 27 6 -1.4851 -2.7828 2.3320 28 6 -0.4276 -2.1398 1.7251 29 6 0.2551 -2.7617 0.6850 30 1 -0.4851 0.8368 -0.0732 31 1 3.5201 -1.6787 -1.3464 32 1 5.4513 -0.3525 -2.8703 33 1 5.8754 -1.5148 -1.5946 34 1 7.8071 -1.1913 -2.9807 35 1 7.1724 -2.8150 -3.2784 36 1 7.9038 -1.6173 -5.3434 37 1 6.6299 -0.4149 -5.0485 38 1 5.8846 -3.3355 -5.1046 39 1 6.1785 -2.4882 -6.6439 40 1 4.1663 -1.3547 -6.3001 41 1 0.6901 -5.3534 -1.3397 42 1 -1.5305 -5.6647 0.5825 43 1 -2.7058 -4.5392 2.4037 44 1 -2.0143 -2.2974 3.1387 45 1 -0.1308 -1.1553 2.0554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609163920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = -12.426692 kcal Electronic energy + Delta-G solvation = -30478.300202 eV Core-core repulsion = 26460.848996 eV Total energy + Delta-G solvation = -4017.451206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.63005 -40.09246 -38.14816 -36.64741 -35.86181 -34.78679 -33.53518 -32.77541 -30.71238 -30.20437 -28.85789 -27.97324 -26.11259 -24.98753 -24.10103 -22.86635 -21.10933 -20.87925 -20.18993 -19.34107 -19.15768 -18.06937 -17.22082 -17.03809 -16.40567 -15.61365 -15.44573 -14.87385 -14.81280 -14.56793 -14.36187 -14.11345 -14.03705 -13.78064 -13.54813 -13.19772 -13.00708 -12.81785 -12.71682 -12.47439 -12.26758 -11.88701 -11.76770 -11.61357 -11.49101 -11.31908 -11.09519 -10.99726 -10.84623 -10.71473 -10.60677 -10.09565 -9.80232 -9.70094 -9.41069 -9.22472 -9.04475 -8.56166 -8.49444 -7.10365 -6.78903 -6.52048 -4.69259 1.89549 2.82394 2.90485 2.94116 2.99414 3.03281 3.09612 3.37592 3.74024 3.78506 4.30261 4.45202 4.53477 4.59487 4.61298 4.71406 4.87169 4.99586 5.12851 5.23630 5.27502 5.30877 5.46906 5.66694 5.75566 5.78300 5.81701 5.91287 5.99083 6.02213 6.08786 6.21681 6.48315 6.64956 6.75738 6.78500 6.88807 6.95417 7.01142 7.17198 7.18599 7.34487 7.54140 7.63453 7.72288 7.96258 7.98827 8.20795 8.40518 8.47373 8.69846 8.97068 9.33310 10.21061 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.004230 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.180872 B = 6617.570507 C = 7961.301553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.067 3.933 3 Si 0.920 3.080 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.374 4.374 8 H 0.102 0.898 9 N -0.263 5.263 10 C -0.013 4.013 11 C 0.605 3.395 12 O -0.559 6.559 13 N -0.707 5.707 14 C 0.131 3.869 15 H 0.107 0.893 16 C -0.124 4.124 17 C -0.118 4.118 18 C -0.143 4.143 19 C 0.106 3.894 20 N -0.729 5.729 21 C 0.502 3.498 22 O -0.522 6.522 23 C -0.164 4.164 24 C -0.135 4.135 25 C -0.088 4.088 26 C -0.160 4.160 27 C -0.149 4.149 28 C -0.050 4.050 29 C 0.112 3.888 30 H 0.283 0.717 31 H 0.417 0.583 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.397 0.603 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.792 -0.440 -4.852 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.148 4.148 3 Si 0.744 3.256 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.501 4.501 8 H 0.119 0.881 9 N 0.072 4.928 10 C -0.127 4.127 11 C 0.396 3.604 12 O -0.438 6.438 13 N -0.367 5.367 14 C 0.021 3.979 15 H 0.124 0.876 16 C -0.162 4.162 17 C -0.156 4.156 18 C -0.181 4.181 19 C -0.019 4.019 20 N -0.384 5.384 21 C 0.286 3.714 22 O -0.396 6.396 23 C -0.192 4.192 24 C -0.140 4.140 25 C -0.107 4.107 26 C -0.179 4.179 27 C -0.169 4.169 28 C -0.070 4.070 29 C -0.002 4.002 30 H 0.094 0.906 31 H 0.263 0.737 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.233 0.767 41 H 0.150 0.850 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.392 -0.374 -5.126 13.416 hybrid contribution 0.045 1.461 -0.321 1.497 sum 12.437 1.087 -5.447 13.621 Atomic orbital electron populations 1.69902 1.06287 1.29520 1.38835 1.25686 0.95671 1.00309 0.93114 0.86018 0.79766 0.80395 0.79439 1.19104 1.19836 1.18508 1.19297 0.91669 0.81694 1.57454 0.88062 1.39875 1.21854 1.11244 1.19801 1.20083 1.01743 0.93896 0.96980 1.17241 0.79807 0.80817 0.82558 1.90689 1.73968 1.37628 1.41552 1.46411 1.33023 1.28605 1.28631 1.20923 0.89306 1.00797 0.86871 0.87575 1.21545 0.93165 0.99794 1.01703 1.21130 0.97111 1.02483 0.94859 1.21896 0.99599 1.00894 0.95739 1.21776 0.81897 0.96511 1.01715 1.45921 1.19875 1.61420 1.11160 1.21138 0.85604 0.79146 0.85475 1.90814 1.19666 1.43960 1.85141 1.20390 0.97845 0.99405 1.01558 1.18048 0.99755 0.95530 1.00652 1.20042 0.95492 0.98594 0.96532 1.20265 1.01420 0.96373 0.99887 1.20575 0.98714 0.95915 1.01740 1.20091 0.94574 0.98296 0.94033 1.18330 0.93739 0.93000 0.95148 0.90640 0.73709 0.90892 0.89531 0.91086 0.91336 0.90437 0.91083 0.90421 0.89634 0.76681 0.85043 0.87819 0.87979 0.87726 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.27 10.61 55.50 0.59 -20.69 16 2 C 0.07 1.63 5.17 -17.48 -0.09 1.54 16 3 Si 0.92 18.48 29.56 -169.99 -5.02 13.45 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.37 -9.23 7.89 -15.01 -0.12 -9.35 16 8 H 0.10 2.28 6.05 -52.49 -0.32 1.96 16 9 N -0.26 -6.82 2.80 -56.08 -0.16 -6.98 16 10 C -0.01 -0.32 6.77 -82.25 -0.56 -0.88 16 11 C 0.61 14.40 7.64 -12.76 -0.10 14.31 16 12 O -0.56 -13.83 16.55 5.23 0.09 -13.74 16 13 N -0.71 -14.45 4.53 -55.80 -0.25 -14.70 16 14 C 0.13 2.12 2.14 -68.70 -0.15 1.97 16 15 H 0.11 1.63 6.28 -51.93 -0.33 1.31 16 16 C -0.12 -1.48 5.18 -27.31 -0.14 -1.62 16 17 C -0.12 -0.98 5.27 -27.87 -0.15 -1.12 16 18 C -0.14 -1.04 5.76 -27.27 -0.16 -1.19 16 19 C 0.11 0.88 6.45 -3.67 -0.02 0.86 16 20 N -0.73 -9.13 5.28 -59.90 -0.32 -9.45 16 21 C 0.50 8.89 6.92 -11.25 -0.08 8.81 16 22 O -0.52 -12.15 17.27 5.56 0.10 -12.05 16 23 C -0.16 -4.01 10.55 -39.02 -0.41 -4.43 16 24 C -0.14 -3.29 6.16 -106.89 -0.66 -3.95 16 25 C -0.09 -1.86 10.06 -39.51 -0.40 -2.26 16 26 C -0.16 -3.18 9.97 -39.95 -0.40 -3.58 16 27 C -0.15 -3.10 10.02 -39.50 -0.40 -3.50 16 28 C -0.05 -1.20 8.60 -39.41 -0.34 -1.54 16 29 C 0.11 2.89 6.02 -83.84 -0.50 2.39 16 30 H 0.28 6.90 8.31 -40.82 -0.34 6.57 16 31 H 0.42 8.56 4.37 -40.82 -0.18 8.39 16 32 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 33 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.52 7.88 -51.93 -0.41 0.11 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 38 H 0.08 0.68 6.71 -51.92 -0.35 0.33 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.40 4.53 8.91 -40.82 -0.36 4.16 16 41 H 0.13 2.96 8.06 -52.49 -0.42 2.54 16 42 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.12 2.85 6.91 -52.48 -0.36 2.49 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -33.68 364.56 -9.79 -43.47 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -5.65 Total: 18.74 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -4.66 Total: -3.55 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.14 Total: -51.82 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: 0.18 Total: -25.80 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.68 -9.79 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609163920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.046 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds