Wall clock time and date at job start Sat Apr 11 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48504 * 109.47083 * 270.00169 * 3 2 1 5 5 H 1.48503 * 109.47082 * 30.00243 * 3 2 1 6 6 H 1.48494 * 109.47215 * 150.00607 * 3 2 1 7 7 C 1.38809 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00508 * 201.56486 * 7 2 1 9 9 N 1.36942 * 119.99680 * 21.56977 * 7 2 1 10 10 C 1.46921 * 120.63487 * 32.30898 * 9 7 2 11 11 C 1.53189 * 108.78037 * 126.41089 * 10 9 7 12 12 C 1.53039 * 109.31062 * 54.63259 * 11 10 9 13 13 N 1.46500 * 109.45833 * 178.62742 * 12 11 10 14 14 C 1.35865 * 120.00026 * 205.02841 * 13 12 11 15 15 C 1.37732 * 120.00157 * 186.06900 * 14 13 12 16 16 C 1.46748 * 120.98846 * 8.02674 * 15 14 13 17 17 O 1.21750 * 119.66715 * 0.02562 * 16 15 14 18 18 N 1.34288 * 120.66452 * 179.74330 * 16 15 14 19 19 C 1.34303 * 122.87674 * 0.55548 * 18 16 15 20 20 O 1.21638 * 119.44554 * 179.69203 * 19 18 16 21 21 C 1.46865 * 121.10614 * 359.70919 * 19 18 16 22 22 C 1.39524 * 121.39441 * 180.02562 * 21 19 18 23 23 C 1.37818 * 119.66199 * 179.97438 * 22 21 19 24 24 C 1.38736 * 120.71239 * 0.02562 * 23 22 21 25 25 C 1.37978 * 120.54523 * 0.02562 * 24 23 22 26 26 C 1.39004 * 119.57796 * 359.97438 * 25 24 23 27 27 C 1.53041 * 109.53203 * 298.64491 * 12 11 10 28 28 C 1.46928 * 120.62433 * 212.32507 * 9 7 2 29 29 H 0.97002 * 120.00165 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.58354 * 6.62191 * 10 9 7 31 31 H 1.09007 * 109.70282 * 246.27139 * 10 9 7 32 32 H 1.08998 * 109.49568 * 294.68246 * 11 10 9 33 33 H 1.08998 * 109.52660 * 174.60089 * 11 10 9 34 34 H 1.09001 * 109.46244 * 58.65887 * 12 11 10 35 35 H 0.97000 * 120.00033 * 25.03121 * 13 12 11 36 36 H 1.08002 * 119.99795 * 6.07304 * 14 13 12 37 37 H 0.96997 * 118.56273 * 180.26996 * 18 16 15 38 38 H 1.08002 * 120.16899 * 359.95939 * 22 21 19 39 39 H 1.07995 * 119.63892 * 180.02562 * 23 22 21 40 40 H 1.08006 * 119.72422 * 180.02562 * 24 23 22 41 41 H 1.08007 * 120.21110 * 179.97438 * 25 24 23 42 42 H 1.08995 * 109.49701 * 181.31425 * 27 12 11 43 43 H 1.09007 * 109.49040 * 301.40875 * 27 12 11 44 44 H 1.08989 * 109.59156 * 353.37899 * 28 9 7 45 45 H 1.09005 * 109.58176 * 113.80418 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0336 -1.2351 0.3432 9 7 1.3974 -2.3463 -0.4371 10 6 0.3846 -2.2943 -1.5001 11 6 0.7838 -3.2720 -2.6098 12 6 0.9920 -4.6635 -2.0076 13 7 1.3420 -5.6082 -3.0712 14 6 1.0857 -6.9332 -2.9143 15 6 1.5261 -7.8361 -3.8566 16 6 2.4196 -7.4188 -4.9433 17 8 2.7793 -6.2579 -5.0155 18 7 2.8491 -8.3057 -5.8555 19 6 2.4891 -9.5995 -5.8404 20 8 2.9113 -10.3478 -6.7014 21 6 1.5940 -10.1259 -4.8018 22 6 1.2165 -11.4689 -4.7800 23 6 0.3751 -11.9249 -3.7883 24 6 -0.1014 -11.0627 -2.8114 25 6 0.2588 -9.7307 -2.8155 26 6 1.1067 -9.2523 -3.8076 27 6 2.1240 -4.6116 -0.9789 28 6 1.7401 -3.6493 0.1492 29 1 -0.4850 0.8400 0.0004 30 1 0.3316 -1.2837 -1.9052 31 1 -0.5873 -2.5774 -1.0959 32 1 1.7097 -2.9350 -3.0759 33 1 -0.0063 -3.3146 -3.3595 34 1 0.0732 -4.9895 -1.5202 35 1 1.7567 -5.2878 -3.8874 36 1 0.5366 -7.2784 -2.0508 37 1 3.4422 -7.9976 -6.5585 38 1 1.5817 -12.1477 -5.5365 39 1 0.0835 -12.9646 -3.7716 40 1 -0.7597 -11.4371 -2.0415 41 1 -0.1156 -9.0641 -2.0526 42 1 2.2874 -5.6075 -0.5674 43 1 3.0373 -4.2619 -1.4604 44 1 2.5813 -3.5328 0.8323 45 1 0.8798 -4.0443 0.6896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730438550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:52 Heat of formation + Delta-G solvation = -10.546589 kcal Electronic energy + Delta-G solvation = -28910.680665 eV Core-core repulsion = 24893.310986 eV Total energy + Delta-G solvation = -4017.369679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52004 -39.40379 -38.77121 -38.24668 -36.10975 -34.98131 -33.43169 -32.08108 -31.37848 -30.54262 -29.92509 -28.21707 -25.31428 -24.61374 -24.16030 -23.02578 -22.48159 -21.98092 -21.24276 -19.79627 -19.03294 -18.35626 -17.66832 -17.08606 -16.23900 -16.10834 -15.99346 -15.62969 -15.01145 -14.87637 -14.59800 -14.32618 -14.21773 -13.98296 -13.84472 -13.65725 -13.61244 -13.46370 -13.09182 -12.95746 -12.60227 -12.13776 -11.83241 -11.65224 -11.44525 -11.27386 -11.05293 -10.85412 -10.60095 -10.54351 -10.42514 -10.29595 -10.22156 -10.16739 -9.94818 -9.78025 -9.47962 -9.26086 -8.59871 -7.50906 -6.82845 -5.95938 -3.40126 0.35561 0.95337 1.46371 2.35988 2.75791 3.00479 3.16230 3.30222 3.38194 3.38906 3.88110 3.98371 4.38107 4.45842 4.56009 4.60589 4.77839 4.89152 5.00807 5.06794 5.11735 5.21900 5.24890 5.34380 5.41546 5.46190 5.58459 5.73851 5.78604 5.90699 5.99133 6.10221 6.14963 6.18260 6.22096 6.23241 6.26903 6.34177 6.57083 6.63364 6.73079 6.79744 6.97429 7.03977 7.22032 7.31567 7.54923 7.70320 7.92150 8.30794 9.04010 9.66835 10.25214 11.12646 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.002306 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.380575 B =12137.861267 C =12947.099748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.012 3.988 3 Si 0.899 3.101 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.265 4.265 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.178 3.822 11 C -0.148 4.148 12 C 0.128 3.872 13 N -0.656 5.656 14 C 0.302 3.698 15 C -0.369 4.369 16 C 0.580 3.420 17 O -0.542 6.542 18 N -0.665 5.665 19 C 0.574 3.426 20 O -0.520 6.520 21 C -0.182 4.182 22 C -0.032 4.032 23 C -0.164 4.164 24 C -0.065 4.065 25 C -0.157 4.157 26 C 0.075 3.925 27 C -0.145 4.145 28 C 0.147 3.853 29 H 0.256 0.744 30 H 0.081 0.919 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.422 0.578 36 H 0.162 0.838 37 H 0.412 0.588 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.802 -20.506 -5.564 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.189 4.189 3 Si 0.728 3.272 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.395 4.395 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.051 3.949 11 C -0.188 4.188 12 C 0.024 3.976 13 N -0.276 5.276 14 C 0.153 3.847 15 C -0.382 4.382 16 C 0.378 3.622 17 O -0.422 6.422 18 N -0.326 5.326 19 C 0.366 3.634 20 O -0.397 6.397 21 C -0.185 4.185 22 C -0.050 4.050 23 C -0.182 4.182 24 C -0.083 4.083 25 C -0.175 4.175 26 C 0.073 3.927 27 C -0.185 4.185 28 C 0.020 3.980 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.270 0.730 36 H 0.179 0.821 37 H 0.251 0.749 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.671 -19.918 -5.721 20.790 hybrid contribution 0.803 1.026 -0.637 1.450 sum -0.868 -18.891 -6.357 19.951 Atomic orbital electron populations 1.70076 1.05444 1.25949 1.52152 1.25117 0.95129 0.98772 0.99836 0.86356 0.79406 0.83540 0.77868 1.21249 1.21687 1.20243 1.19097 0.94271 0.85469 1.40621 0.91740 1.44033 1.46522 1.01862 1.38745 1.20645 0.90761 0.97352 0.86146 1.22537 1.01918 0.93861 1.00495 1.21647 0.98559 0.89822 0.87523 1.46369 1.54888 1.04888 1.21426 1.22308 0.84980 0.83597 0.93852 1.19136 1.19254 0.93609 1.06237 1.18008 0.79247 0.84194 0.80743 1.90570 1.58983 1.17858 1.74779 1.44481 1.47384 1.10442 1.30339 1.18149 0.79722 0.80842 0.84677 1.90835 1.54347 1.56239 1.38279 1.19456 1.05087 0.95292 0.98703 1.21071 0.93694 0.93368 0.96914 1.21019 1.00679 1.00240 0.96291 1.21304 0.96741 0.93144 0.97156 1.20900 1.00945 0.96167 0.99535 1.18520 0.91655 0.90560 0.91951 1.22549 0.98193 0.99987 0.97807 1.20883 0.98155 0.86471 0.92456 0.93451 0.90098 0.95634 0.91512 0.92260 0.89632 0.72971 0.82142 0.74942 0.84831 0.85560 0.85510 0.85308 0.92577 0.91410 0.92074 0.96085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.63 11.84 55.49 0.66 -23.97 16 2 C 0.01 0.31 4.75 -17.43 -0.08 0.23 16 3 Si 0.90 20.79 29.61 -169.99 -5.03 15.76 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.27 -6.86 9.50 -15.06 -0.14 -7.00 16 8 H 0.06 1.66 7.92 -52.48 -0.42 1.25 16 9 N -0.59 -13.39 2.96 -172.34 -0.51 -13.90 16 10 C 0.18 3.74 5.33 -3.71 -0.02 3.72 16 11 C -0.15 -2.41 5.55 -26.61 -0.15 -2.56 16 12 C 0.13 1.72 2.73 -67.89 -0.19 1.53 16 13 N -0.66 -7.93 4.89 -53.95 -0.26 -8.19 16 14 C 0.30 3.00 9.93 -15.95 -0.16 2.84 16 15 C -0.37 -4.18 6.04 -102.75 -0.62 -4.80 16 16 C 0.58 7.66 7.85 -13.04 -0.10 7.56 16 17 O -0.54 -8.28 14.50 5.14 0.07 -8.20 16 18 N -0.67 -8.17 5.10 -13.88 -0.07 -8.24 16 19 C 0.57 7.46 7.85 -12.98 -0.10 7.36 16 20 O -0.52 -7.81 17.20 5.24 0.09 -7.72 16 21 C -0.18 -2.10 5.89 -104.87 -0.62 -2.72 16 22 C -0.03 -0.31 9.62 -39.26 -0.38 -0.69 16 23 C -0.16 -1.27 10.01 -39.55 -0.40 -1.66 16 24 C -0.07 -0.47 10.02 -39.49 -0.40 -0.86 16 25 C -0.16 -1.28 9.48 -39.39 -0.37 -1.65 16 26 C 0.08 0.79 5.90 -104.66 -0.62 0.17 16 27 C -0.15 -2.13 5.65 -26.62 -0.15 -2.28 16 28 C 0.15 2.71 6.52 -3.72 -0.02 2.68 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.08 1.95 6.54 -51.93 -0.34 1.61 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.42 5.84 5.26 -40.84 -0.21 5.63 16 36 H 0.16 1.04 6.47 -52.49 -0.34 0.70 16 37 H 0.41 4.52 8.79 -40.82 -0.36 4.16 16 38 H 0.13 1.23 7.71 -52.49 -0.40 0.83 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 41 H 0.13 0.74 6.50 -52.48 -0.34 0.40 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 44 H 0.06 1.13 7.93 -51.94 -0.41 0.72 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -30.75 368.50 -9.78 -40.53 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.76 Total: 6.53 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -4.51 Total: 1.87 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.19 Total: -54.31 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.16 Total: -15.92 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.75 -9.78 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730438550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.979 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds