Wall clock time and date at job start Sat Apr 11 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48504 * 109.47083 * 270.00169 * 3 2 1 5 5 H 1.48503 * 109.47082 * 30.00243 * 3 2 1 6 6 H 1.48494 * 109.47215 * 150.00607 * 3 2 1 7 7 C 1.38809 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00508 * 201.56486 * 7 2 1 9 9 N 1.36942 * 119.99680 * 21.56977 * 7 2 1 10 10 C 1.46921 * 120.63487 * 32.30898 * 9 7 2 11 11 C 1.53189 * 108.78037 * 126.41089 * 10 9 7 12 12 C 1.53039 * 109.31062 * 54.63259 * 11 10 9 13 13 N 1.46500 * 109.45833 * 178.62742 * 12 11 10 14 14 C 1.35865 * 120.00026 * 205.02841 * 13 12 11 15 15 C 1.37732 * 120.00157 * 186.06900 * 14 13 12 16 16 C 1.46748 * 120.98846 * 8.02674 * 15 14 13 17 17 O 1.21750 * 119.66715 * 0.02562 * 16 15 14 18 18 N 1.34288 * 120.66452 * 179.74330 * 16 15 14 19 19 C 1.34303 * 122.87674 * 0.55548 * 18 16 15 20 20 O 1.21638 * 119.44554 * 179.69203 * 19 18 16 21 21 C 1.46865 * 121.10614 * 359.70919 * 19 18 16 22 22 C 1.39524 * 121.39441 * 180.02562 * 21 19 18 23 23 C 1.37818 * 119.66199 * 179.97438 * 22 21 19 24 24 C 1.38736 * 120.71239 * 0.02562 * 23 22 21 25 25 C 1.37978 * 120.54523 * 0.02562 * 24 23 22 26 26 C 1.39004 * 119.57796 * 359.97438 * 25 24 23 27 27 C 1.53041 * 109.53203 * 298.64491 * 12 11 10 28 28 C 1.46928 * 120.62433 * 212.32507 * 9 7 2 29 29 H 0.97002 * 120.00165 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.58354 * 6.62191 * 10 9 7 31 31 H 1.09007 * 109.70282 * 246.27139 * 10 9 7 32 32 H 1.08998 * 109.49568 * 294.68246 * 11 10 9 33 33 H 1.08998 * 109.52660 * 174.60089 * 11 10 9 34 34 H 1.09001 * 109.46244 * 58.65887 * 12 11 10 35 35 H 0.97000 * 120.00033 * 25.03121 * 13 12 11 36 36 H 1.08002 * 119.99795 * 6.07304 * 14 13 12 37 37 H 0.96997 * 118.56273 * 180.26996 * 18 16 15 38 38 H 1.08002 * 120.16899 * 359.95939 * 22 21 19 39 39 H 1.07995 * 119.63892 * 180.02562 * 23 22 21 40 40 H 1.08006 * 119.72422 * 180.02562 * 24 23 22 41 41 H 1.08007 * 120.21110 * 179.97438 * 25 24 23 42 42 H 1.08995 * 109.49701 * 181.31425 * 27 12 11 43 43 H 1.09007 * 109.49040 * 301.40875 * 27 12 11 44 44 H 1.08989 * 109.59156 * 353.37899 * 28 9 7 45 45 H 1.09005 * 109.58176 * 113.80418 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0336 -1.2351 0.3432 9 7 1.3974 -2.3463 -0.4371 10 6 0.3846 -2.2943 -1.5001 11 6 0.7838 -3.2720 -2.6098 12 6 0.9920 -4.6635 -2.0076 13 7 1.3420 -5.6082 -3.0712 14 6 1.0857 -6.9332 -2.9143 15 6 1.5261 -7.8361 -3.8566 16 6 2.4196 -7.4188 -4.9433 17 8 2.7793 -6.2579 -5.0155 18 7 2.8491 -8.3057 -5.8555 19 6 2.4891 -9.5995 -5.8404 20 8 2.9113 -10.3478 -6.7014 21 6 1.5940 -10.1259 -4.8018 22 6 1.2165 -11.4689 -4.7800 23 6 0.3751 -11.9249 -3.7883 24 6 -0.1014 -11.0627 -2.8114 25 6 0.2588 -9.7307 -2.8155 26 6 1.1067 -9.2523 -3.8076 27 6 2.1240 -4.6116 -0.9789 28 6 1.7401 -3.6493 0.1492 29 1 -0.4850 0.8400 0.0004 30 1 0.3316 -1.2837 -1.9052 31 1 -0.5873 -2.5774 -1.0959 32 1 1.7097 -2.9350 -3.0759 33 1 -0.0063 -3.3146 -3.3595 34 1 0.0732 -4.9895 -1.5202 35 1 1.7567 -5.2878 -3.8874 36 1 0.5366 -7.2784 -2.0508 37 1 3.4422 -7.9976 -6.5585 38 1 1.5817 -12.1477 -5.5365 39 1 0.0835 -12.9646 -3.7716 40 1 -0.7597 -11.4371 -2.0415 41 1 -0.1156 -9.0641 -2.0526 42 1 2.2874 -5.6075 -0.5674 43 1 3.0373 -4.2619 -1.4604 44 1 2.5813 -3.5328 0.8323 45 1 0.8798 -4.0443 0.6896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730438550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:51 Heat of formation + Delta-G solvation = -30.026099 kcal Electronic energy + Delta-G solvation = -28911.525360 eV Core-core repulsion = 24893.310986 eV Total energy + Delta-G solvation = -4018.214374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.43854 -40.42696 -39.69648 -39.27238 -37.38154 -35.96794 -34.79997 -33.36721 -32.06907 -31.88814 -31.36068 -29.21654 -26.85497 -25.39946 -25.28961 -24.03950 -23.77587 -23.21959 -22.07934 -21.06869 -20.00546 -19.23653 -18.74837 -18.62902 -17.32205 -17.07166 -16.93484 -16.68612 -16.49952 -15.85094 -15.61398 -15.41563 -15.35275 -15.14639 -15.04913 -14.85432 -14.79900 -14.39986 -14.27397 -13.97601 -13.73207 -13.23814 -13.10828 -12.87528 -12.80702 -12.63198 -12.54490 -12.13533 -12.03020 -11.97145 -11.81709 -11.45988 -11.37343 -11.33935 -11.32993 -11.16062 -10.56639 -10.29953 -9.92205 -8.68118 -8.34146 -7.92924 -5.38108 -0.43581 0.28738 0.63905 1.44095 1.47702 1.48369 1.54658 1.84197 2.14967 2.24041 2.48894 3.12013 3.16930 3.22223 3.65375 3.72285 3.75287 3.88696 3.92798 3.95063 4.12146 4.26214 4.35326 4.42146 4.47050 4.51549 4.63424 4.77314 4.78385 4.84213 4.92929 4.95858 5.02007 5.04871 5.15402 5.16459 5.31942 5.41446 5.44335 5.55133 5.61911 5.63615 5.66563 5.85847 6.02481 6.10117 6.24594 6.38527 6.55864 6.94758 7.13112 7.83353 8.35437 9.12726 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.002306 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.380575 B =12137.861267 C =12947.099748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.037 4.037 3 Si 0.954 3.046 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.270 4.270 8 H 0.059 0.941 9 N -0.610 5.610 10 C 0.184 3.816 11 C -0.137 4.137 12 C 0.142 3.858 13 N -0.662 5.662 14 C 0.315 3.685 15 C -0.374 4.374 16 C 0.568 3.432 17 O -0.570 6.570 18 N -0.664 5.664 19 C 0.569 3.431 20 O -0.553 6.553 21 C -0.208 4.208 22 C -0.047 4.047 23 C -0.158 4.158 24 C -0.057 4.057 25 C -0.153 4.153 26 C 0.065 3.935 27 C -0.133 4.133 28 C 0.144 3.856 29 H 0.251 0.749 30 H 0.041 0.959 31 H 0.017 0.983 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.413 0.587 36 H 0.207 0.793 37 H 0.412 0.588 38 H 0.128 0.872 39 H 0.152 0.848 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 -23.026 -3.959 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.235 4.235 3 Si 0.783 3.217 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.400 4.400 8 H 0.077 0.923 9 N -0.333 5.333 10 C 0.057 3.943 11 C -0.176 4.176 12 C 0.038 3.962 13 N -0.281 5.281 14 C 0.167 3.833 15 C -0.387 4.387 16 C 0.369 3.631 17 O -0.453 6.453 18 N -0.325 5.325 19 C 0.364 3.636 20 O -0.432 6.432 21 C -0.212 4.212 22 C -0.066 4.066 23 C -0.176 4.176 24 C -0.075 4.075 25 C -0.171 4.171 26 C 0.063 3.937 27 C -0.173 4.173 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.260 0.740 36 H 0.224 0.776 37 H 0.251 0.749 38 H 0.146 0.854 39 H 0.169 0.831 40 H 0.180 0.820 41 H 0.179 0.821 42 H 0.111 0.889 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.949 -22.493 -4.113 23.055 hybrid contribution 1.198 1.683 -1.121 2.351 sum -1.751 -20.809 -5.235 21.529 Atomic orbital electron populations 1.70172 1.06523 1.26086 1.54026 1.25732 0.95802 1.01326 1.00595 0.85477 0.78484 0.80284 0.77473 1.21506 1.22011 1.19490 1.19345 0.94224 0.87009 1.39433 0.92330 1.44290 1.46651 1.02676 1.39730 1.20442 0.90261 0.96576 0.86989 1.22272 1.01536 0.94753 0.99057 1.21383 0.99141 0.88428 0.87228 1.46171 1.55570 1.05649 1.20700 1.22826 0.83932 0.82077 0.94424 1.19234 1.19038 0.94580 1.05802 1.18503 0.79549 0.83840 0.81254 1.90559 1.60277 1.18839 1.75594 1.44514 1.47177 1.10446 1.30323 1.18570 0.79630 0.80620 0.84803 1.90802 1.55856 1.56872 1.39705 1.19548 1.06040 0.96429 0.99148 1.21194 0.94723 0.92752 0.97914 1.21380 0.99205 1.01745 0.95301 1.21760 0.96016 0.92605 0.97156 1.21299 0.99546 0.97180 0.99051 1.18582 0.92682 0.89772 0.92676 1.22378 0.97617 1.00578 0.96715 1.21031 0.98215 0.85217 0.93756 0.93958 0.94088 0.96497 0.93258 0.90448 0.86866 0.74013 0.77625 0.74925 0.85374 0.83052 0.81982 0.82068 0.88876 0.93511 0.92847 0.94926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.08 11.84 21.65 0.26 -51.82 16 2 C -0.04 -2.00 4.75 84.86 0.40 -1.60 16 3 Si 0.95 43.52 29.61 68.60 2.03 45.56 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.27 -14.13 9.50 84.03 0.80 -13.34 16 8 H 0.06 3.07 7.92 -2.91 -0.02 3.04 16 9 N -0.61 -27.74 2.96 -699.15 -2.07 -29.81 16 10 C 0.18 7.77 5.33 86.36 0.46 8.23 16 11 C -0.14 -4.30 5.55 30.67 0.17 -4.13 16 12 C 0.14 3.37 2.73 45.02 0.12 3.49 16 13 N -0.66 -14.04 4.89 -324.61 -1.59 -15.62 16 14 C 0.31 4.94 9.93 83.95 0.83 5.77 16 15 C -0.37 -7.57 6.04 -18.65 -0.11 -7.68 16 16 C 0.57 14.87 7.85 86.54 0.68 15.54 16 17 O -0.57 -17.50 14.50 -4.51 -0.07 -17.57 16 18 N -0.66 -16.86 5.10 -434.79 -2.22 -19.08 16 19 C 0.57 15.21 7.85 86.57 0.68 15.89 16 20 O -0.55 -17.39 17.20 -4.15 -0.07 -17.46 16 21 C -0.21 -4.63 5.89 -20.02 -0.12 -4.74 16 22 C -0.05 -0.86 9.62 22.48 0.22 -0.64 16 23 C -0.16 -1.88 10.01 22.29 0.22 -1.66 16 24 C -0.06 -0.53 10.02 22.33 0.22 -0.30 16 25 C -0.15 -1.71 9.48 22.39 0.21 -1.50 16 26 C 0.06 1.18 5.90 -19.89 -0.12 1.07 16 27 C -0.13 -3.53 5.65 30.66 0.17 -3.36 16 28 C 0.14 5.03 6.52 86.35 0.56 5.60 16 29 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 30 H 0.04 2.04 6.54 -2.38 -0.02 2.02 16 31 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.11 2.17 8.08 -2.39 -0.02 2.15 16 35 H 0.41 10.85 5.26 -93.00 -0.49 10.36 16 36 H 0.21 1.25 6.47 -2.91 -0.02 1.23 16 37 H 0.41 9.70 8.79 -92.71 -0.82 8.88 16 38 H 0.13 2.37 7.71 -2.91 -0.02 2.35 16 39 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.16 0.41 8.06 -2.91 -0.02 0.38 16 41 H 0.16 0.71 6.50 -2.91 -0.02 0.69 16 42 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.05 1.45 8.14 -2.38 -0.02 1.44 16 44 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 45 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -71.03 368.50 1.43 -69.60 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.25 Total: 19.57 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 5.41 Total: 16.64 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -5.62 Total: -116.33 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.14 Total: -35.03 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.56 kcal Total: -71.03 1.43 -69.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730438550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.574 kcal (2) G-P(sol) polarization free energy of solvation -71.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds