Wall clock time and date at job start Sat Apr 11 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31260 * 1 3 3 Si 1.86802 * 119.99811 * 2 1 4 4 H 1.48499 * 109.46830 * 270.00194 * 3 2 1 5 5 H 1.48498 * 109.46961 * 29.99890 * 3 2 1 6 6 H 1.48495 * 109.47136 * 150.00135 * 3 2 1 7 7 C 1.39075 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99791 * 160.39381 * 7 2 1 9 9 N 1.37106 * 120.00487 * 340.39832 * 7 2 1 10 10 C 1.35340 * 119.71299 * 318.87143 * 9 7 2 11 11 O 1.21720 * 121.29084 * 359.97438 * 10 9 7 12 12 C 1.46960 * 117.42739 * 180.27171 * 10 9 7 13 13 C 1.39369 * 121.90973 * 180.29429 * 12 10 9 14 14 C 1.37793 * 119.52161 * 179.76676 * 13 12 10 15 15 C 1.38875 * 120.56850 * 359.73599 * 14 13 12 16 16 C 1.37712 * 120.82595 * 359.97186 * 15 14 13 17 17 C 1.39633 * 119.69870 * 0.02657 * 16 15 14 18 18 N 1.35632 * 121.62604 * 179.97438 * 17 16 15 19 19 C 1.29825 * 121.62148 * 180.02562 * 18 17 16 20 20 C 1.50704 * 118.34815 * 179.97438 * 19 18 17 21 21 N 1.46902 * 109.46802 * 0.02562 * 20 19 18 22 22 C 1.48558 * 110.99967 * 69.87506 * 21 20 19 23 23 C 1.54383 * 104.59427 * 159.03711 * 22 21 20 24 24 H 1.09005 * 117.60234 * 115.27899 * 23 22 21 25 25 C 1.52996 * 118.13127 * 270.80486 * 23 22 21 26 26 C 1.54262 * 105.06178 * 336.15054 * 23 22 21 27 27 C 1.52991 * 121.78789 * 137.87075 * 26 23 22 28 28 O 1.42901 * 109.46943 * 179.97438 * 27 26 23 29 29 C 1.48562 * 110.99907 * 185.29392 * 21 20 19 30 30 H 0.96997 * 120.00349 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.23680 * 359.49954 * 13 12 10 32 32 H 1.07997 * 119.71692 * 179.75010 * 14 13 12 33 33 H 1.08004 * 119.58746 * 179.97438 * 15 14 13 34 34 H 1.08005 * 120.14973 * 179.97438 * 16 15 14 35 35 H 1.09002 * 109.47435 * 120.02254 * 20 19 18 36 36 H 1.09002 * 109.47447 * 240.02582 * 20 19 18 37 37 H 1.08998 * 110.40778 * 277.81389 * 22 21 20 38 38 H 1.08993 * 110.41250 * 40.25743 * 22 21 20 39 39 H 1.08994 * 117.44147 * 199.31593 * 25 23 22 40 40 H 1.09004 * 117.44137 * 344.01708 * 25 23 22 41 41 H 1.08997 * 109.47526 * 299.99568 * 27 26 23 42 42 H 1.09001 * 109.47143 * 60.00077 * 27 26 23 43 43 H 0.96709 * 113.99888 * 179.97438 * 28 27 26 44 44 H 1.09007 * 110.40882 * 319.73679 * 29 21 20 45 45 H 1.09003 * 110.41531 * 82.17996 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 2.4940 2.0464 -1.4001 5 1 1.4439 2.6526 0.7000 6 1 3.5441 1.4403 0.7000 7 6 2.0080 -1.2044 0.0005 8 1 3.0410 -1.2316 -0.3133 9 7 1.3821 -2.3573 0.3994 10 6 0.5560 -2.3358 1.4711 11 8 0.3547 -1.3094 2.0938 12 6 -0.0836 -3.6010 1.8583 13 6 -0.9554 -3.6842 2.9425 14 6 -1.5316 -4.8952 3.2590 15 6 -1.2547 -6.0278 2.5045 16 6 -0.4010 -5.9657 1.4258 17 6 0.1955 -4.7502 1.0846 18 7 1.0426 -4.6447 0.0306 19 6 1.5975 -3.5146 -0.2862 20 6 2.5275 -3.4816 -1.4716 21 7 2.6177 -4.8242 -2.0608 22 6 1.3432 -5.2009 -2.7248 23 6 1.7363 -6.3169 -3.7164 24 1 1.3272 -7.3125 -3.5444 25 6 2.1614 -5.9101 -5.1287 26 6 3.2361 -6.0924 -3.9987 27 6 4.2256 -7.2569 -4.0718 28 8 5.5346 -6.7533 -4.3453 29 6 3.6231 -4.8595 -3.1539 30 1 -0.4850 0.8400 -0.0004 31 1 -1.1743 -2.8068 3.5329 32 1 -2.2044 -4.9641 4.1010 33 1 -1.7148 -6.9690 2.7670 34 1 -0.1931 -6.8535 0.8468 35 1 2.1435 -2.7834 -2.2154 36 1 3.5174 -3.1596 -1.1480 37 1 0.6297 -5.5775 -1.9919 38 1 0.9261 -4.3473 -3.2589 39 1 2.1248 -6.6751 -5.9042 40 1 1.9175 -4.8991 -5.4551 41 1 4.2320 -7.7886 -3.1203 42 1 3.9257 -7.9392 -4.8673 43 1 6.2150 -7.4380 -4.4052 44 1 3.5627 -3.9524 -3.7553 45 1 4.6261 -4.9791 -2.7442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782618906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:39 Heat of formation + Delta-G solvation = 27.543901 kcal Electronic energy + Delta-G solvation = -30095.690758 eV Core-core repulsion = 26079.972807 eV Total energy + Delta-G solvation = -4015.717951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.53231 -39.71924 -37.58853 -36.75825 -36.17461 -34.00629 -33.71669 -31.87703 -30.35317 -29.42921 -28.71891 -27.03919 -25.94626 -25.77844 -23.50224 -22.79630 -21.46005 -20.70099 -20.35349 -19.11073 -18.72738 -17.77394 -17.32192 -16.88852 -15.84878 -15.61233 -15.26183 -14.99872 -14.68556 -14.46423 -14.28789 -13.90769 -13.79837 -13.73892 -13.57647 -13.00956 -12.93244 -12.60473 -12.51628 -12.29357 -12.01817 -11.85317 -11.60455 -11.32215 -11.23111 -11.15038 -10.99194 -10.95101 -10.82776 -10.65183 -10.49970 -10.33685 -10.07177 -9.55354 -9.48259 -8.90373 -8.74966 -8.34764 -8.33549 -8.01641 -7.02467 -6.68330 -4.52028 1.52893 1.69321 3.03165 3.13066 3.16598 3.26636 3.45172 3.74375 3.92364 4.03880 4.10234 4.45292 4.66326 4.71403 4.81900 4.89783 5.01955 5.10922 5.15600 5.30167 5.34510 5.41039 5.49646 5.53790 5.60147 5.68210 5.76614 5.80831 5.84654 5.89433 5.97513 6.06775 6.11306 6.17955 6.21793 6.26724 6.45294 6.55529 6.71862 6.83279 7.04062 7.09135 7.13801 7.21537 7.30708 7.52745 7.53504 7.62567 8.13406 8.47905 8.73357 9.21627 9.52903 10.33021 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.004519 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.070377 B = 6194.717830 C = 8656.001816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.079 3.921 3 Si 0.928 3.072 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.385 4.385 8 H 0.107 0.893 9 N -0.352 5.352 10 C 0.520 3.480 11 O -0.503 6.503 12 C -0.210 4.210 13 C -0.038 4.038 14 C -0.177 4.177 15 C -0.090 4.090 16 C -0.131 4.131 17 C 0.168 3.832 18 N -0.545 5.545 19 C 0.364 3.636 20 C 0.113 3.887 21 N -0.485 5.485 22 C 0.065 3.935 23 C -0.140 4.140 24 H 0.114 0.886 25 C -0.150 4.150 26 C -0.139 4.139 27 C 0.129 3.871 28 O -0.568 6.568 29 C 0.074 3.926 30 H 0.280 0.720 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.039 0.961 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.377 0.623 44 H 0.043 0.957 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.952 -12.439 -7.214 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.138 4.138 3 Si 0.752 3.248 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.512 4.512 8 H 0.125 0.875 9 N -0.055 5.055 10 C 0.314 3.686 11 O -0.377 6.377 12 C -0.218 4.218 13 C -0.058 4.058 14 C -0.197 4.197 15 C -0.110 4.110 16 C -0.151 4.151 17 C 0.052 3.948 18 N -0.273 5.273 19 C 0.101 3.899 20 C -0.017 4.017 21 N -0.209 5.209 22 C -0.063 4.063 23 C -0.159 4.159 24 H 0.132 0.868 25 C -0.187 4.187 26 C -0.140 4.140 27 C 0.051 3.949 28 O -0.373 6.373 29 C -0.053 4.053 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.057 0.943 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.223 0.777 44 H 0.061 0.939 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.521 -12.074 -6.672 14.237 hybrid contribution 0.041 1.513 -0.087 1.516 sum 3.562 -10.560 -6.759 13.034 Atomic orbital electron populations 1.69806 1.07200 1.29493 1.36224 1.25399 0.94969 1.00453 0.92945 0.85950 0.79986 0.80393 0.78481 1.19868 1.20199 1.18709 1.19571 0.96924 0.84198 1.50468 0.87545 1.42254 1.34364 1.08377 1.20500 1.18186 0.81755 0.88200 0.80442 1.90661 1.60987 1.33485 1.52554 1.20856 1.04926 0.94490 1.01519 1.20875 0.92966 0.97416 0.94526 1.20821 1.03968 0.92898 1.01970 1.20963 0.97270 0.97841 0.94954 1.20582 0.99552 0.96210 0.98723 1.18850 0.92737 0.92518 0.90741 1.68469 1.16747 1.22535 1.19513 1.22617 0.93236 0.82944 0.91070 1.20894 0.98076 0.89867 0.92870 1.65419 1.04529 1.24431 1.26520 1.22752 0.93307 0.95212 0.94981 1.23615 0.95680 1.00996 0.95645 0.86842 1.23839 1.00959 1.02681 0.91252 1.22955 0.90314 0.98332 1.02420 1.21322 0.81864 0.92895 0.98838 1.86503 1.17908 1.38049 1.94864 1.22445 0.97414 0.94504 0.90966 0.90977 0.85987 0.86703 0.86588 0.85791 0.91295 0.88459 0.87454 0.94314 0.88375 0.88850 0.92786 0.93836 0.77692 0.93853 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.18 11.54 55.50 0.64 -21.54 16 2 C 0.08 2.05 4.36 -17.49 -0.08 1.97 16 3 Si 0.93 19.82 29.60 -169.99 -5.03 14.79 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.38 -9.76 8.24 -14.88 -0.12 -9.88 16 8 H 0.11 2.45 7.07 -52.49 -0.37 2.08 16 9 N -0.35 -8.96 2.68 -59.56 -0.16 -9.12 16 10 C 0.52 14.06 6.93 -12.47 -0.09 13.97 16 11 O -0.50 -14.88 14.28 5.17 0.07 -14.80 16 12 C -0.21 -4.99 5.89 -104.77 -0.62 -5.61 16 13 C -0.04 -0.80 9.68 -39.32 -0.38 -1.18 16 14 C -0.18 -3.03 10.02 -39.51 -0.40 -3.43 16 15 C -0.09 -1.45 10.00 -39.54 -0.40 -1.85 16 16 C -0.13 -2.37 10.03 -39.25 -0.39 -2.76 16 17 C 0.17 3.66 6.63 -84.49 -0.56 3.10 16 18 N -0.55 -11.76 7.57 -8.10 -0.06 -11.82 16 19 C 0.36 8.12 7.29 -154.88 -1.13 7.00 16 20 C 0.11 2.08 3.93 -4.97 -0.02 2.06 16 21 N -0.49 -7.97 4.98 -231.40 -1.15 -9.12 16 22 C 0.06 1.01 5.56 -2.18 -0.01 1.00 16 23 C -0.14 -1.75 6.88 -89.24 -0.61 -2.36 16 24 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 25 C -0.15 -1.65 10.09 -24.56 -0.25 -1.90 16 26 C -0.14 -1.72 2.86 -150.95 -0.43 -2.15 16 27 C 0.13 1.32 7.36 37.15 0.27 1.59 16 28 O -0.57 -5.88 13.07 -35.23 -0.46 -6.34 16 29 C 0.07 1.06 5.96 -2.18 -0.01 1.05 16 30 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.12 2.53 7.83 -52.49 -0.41 2.12 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.12 1.99 8.06 -52.48 -0.42 1.56 16 35 H 0.07 1.30 7.78 -51.93 -0.40 0.89 16 36 H 0.10 1.71 7.57 -51.93 -0.39 1.32 16 37 H 0.11 1.86 6.65 -51.93 -0.35 1.51 16 38 H 0.04 0.63 7.82 -51.93 -0.41 0.22 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.04 0.37 8.07 -51.93 -0.42 -0.05 16 43 H 0.38 2.05 9.12 45.56 0.42 2.47 16 44 H 0.04 0.62 8.00 -51.93 -0.42 0.20 16 45 H 0.09 1.30 7.67 -51.93 -0.40 0.90 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -32.13 369.37 -11.05 -43.18 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.24 Total: 8.58 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -5.22 Total: 0.63 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.73 Total: -51.60 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.39 Total: -21.14 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.13 -11.05 -43.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782618906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.723 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds