Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31260 * 1 3 3 Si 1.86802 * 119.99811 * 2 1 4 4 H 1.48499 * 109.46830 * 270.00194 * 3 2 1 5 5 H 1.48498 * 109.46961 * 29.99890 * 3 2 1 6 6 H 1.48495 * 109.47136 * 150.00135 * 3 2 1 7 7 C 1.39075 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99791 * 160.39381 * 7 2 1 9 9 N 1.37106 * 120.00487 * 340.39832 * 7 2 1 10 10 C 1.35340 * 119.71299 * 318.87143 * 9 7 2 11 11 O 1.21720 * 121.29084 * 359.97438 * 10 9 7 12 12 C 1.46960 * 117.42739 * 180.27171 * 10 9 7 13 13 C 1.39369 * 121.90973 * 180.29429 * 12 10 9 14 14 C 1.37793 * 119.52161 * 179.76676 * 13 12 10 15 15 C 1.38875 * 120.56850 * 359.73599 * 14 13 12 16 16 C 1.37712 * 120.82595 * 359.97186 * 15 14 13 17 17 C 1.39633 * 119.69870 * 0.02657 * 16 15 14 18 18 N 1.35632 * 121.62604 * 179.97438 * 17 16 15 19 19 C 1.29825 * 121.62148 * 180.02562 * 18 17 16 20 20 C 1.50704 * 118.34815 * 179.97438 * 19 18 17 21 21 N 1.46902 * 109.46802 * 0.02562 * 20 19 18 22 22 C 1.48558 * 110.99967 * 69.87506 * 21 20 19 23 23 C 1.54383 * 104.59427 * 159.03711 * 22 21 20 24 24 H 1.09005 * 117.60234 * 115.27899 * 23 22 21 25 25 C 1.52996 * 118.13127 * 270.80486 * 23 22 21 26 26 C 1.54262 * 105.06178 * 336.15054 * 23 22 21 27 27 C 1.52991 * 121.78789 * 137.87075 * 26 23 22 28 28 O 1.42901 * 109.46943 * 179.97438 * 27 26 23 29 29 C 1.48562 * 110.99907 * 185.29392 * 21 20 19 30 30 H 0.96997 * 120.00349 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.23680 * 359.49954 * 13 12 10 32 32 H 1.07997 * 119.71692 * 179.75010 * 14 13 12 33 33 H 1.08004 * 119.58746 * 179.97438 * 15 14 13 34 34 H 1.08005 * 120.14973 * 179.97438 * 16 15 14 35 35 H 1.09002 * 109.47435 * 120.02254 * 20 19 18 36 36 H 1.09002 * 109.47447 * 240.02582 * 20 19 18 37 37 H 1.08998 * 110.40778 * 277.81389 * 22 21 20 38 38 H 1.08993 * 110.41250 * 40.25743 * 22 21 20 39 39 H 1.08994 * 117.44147 * 199.31593 * 25 23 22 40 40 H 1.09004 * 117.44137 * 344.01708 * 25 23 22 41 41 H 1.08997 * 109.47526 * 299.99568 * 27 26 23 42 42 H 1.09001 * 109.47143 * 60.00077 * 27 26 23 43 43 H 0.96709 * 113.99888 * 179.97438 * 28 27 26 44 44 H 1.09007 * 110.40882 * 319.73679 * 29 21 20 45 45 H 1.09003 * 110.41531 * 82.17996 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 2.4940 2.0464 -1.4001 5 1 1.4439 2.6526 0.7000 6 1 3.5441 1.4403 0.7000 7 6 2.0080 -1.2044 0.0005 8 1 3.0410 -1.2316 -0.3133 9 7 1.3821 -2.3573 0.3994 10 6 0.5560 -2.3358 1.4711 11 8 0.3547 -1.3094 2.0938 12 6 -0.0836 -3.6010 1.8583 13 6 -0.9554 -3.6842 2.9425 14 6 -1.5316 -4.8952 3.2590 15 6 -1.2547 -6.0278 2.5045 16 6 -0.4010 -5.9657 1.4258 17 6 0.1955 -4.7502 1.0846 18 7 1.0426 -4.6447 0.0306 19 6 1.5975 -3.5146 -0.2862 20 6 2.5275 -3.4816 -1.4716 21 7 2.6177 -4.8242 -2.0608 22 6 1.3432 -5.2009 -2.7248 23 6 1.7363 -6.3169 -3.7164 24 1 1.3272 -7.3125 -3.5444 25 6 2.1614 -5.9101 -5.1287 26 6 3.2361 -6.0924 -3.9987 27 6 4.2256 -7.2569 -4.0718 28 8 5.5346 -6.7533 -4.3453 29 6 3.6231 -4.8595 -3.1539 30 1 -0.4850 0.8400 -0.0004 31 1 -1.1743 -2.8068 3.5329 32 1 -2.2044 -4.9641 4.1010 33 1 -1.7148 -6.9690 2.7670 34 1 -0.1931 -6.8535 0.8468 35 1 2.1435 -2.7834 -2.2154 36 1 3.5174 -3.1596 -1.1480 37 1 0.6297 -5.5775 -1.9919 38 1 0.9261 -4.3473 -3.2589 39 1 2.1248 -6.6751 -5.9042 40 1 1.9175 -4.8991 -5.4551 41 1 4.2320 -7.7886 -3.1203 42 1 3.9257 -7.9392 -4.8673 43 1 6.2150 -7.4380 -4.4052 44 1 3.5627 -3.9524 -3.7553 45 1 4.6261 -4.9791 -2.7442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782618906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = 5.272811 kcal Electronic energy + Delta-G solvation = -30096.656505 eV Core-core repulsion = 26079.972807 eV Total energy + Delta-G solvation = -4016.683698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25455 -40.86292 -39.22029 -38.28260 -37.26884 -35.60327 -35.16864 -33.72955 -31.95189 -30.99037 -29.78270 -28.49373 -27.64327 -26.85276 -25.02023 -24.39045 -22.91685 -22.23564 -21.53350 -20.53792 -20.11354 -19.47223 -18.55072 -18.07252 -17.47606 -16.91564 -16.83054 -16.42259 -16.09027 -15.98036 -15.58534 -15.42538 -15.31814 -15.19997 -14.91671 -14.60133 -14.02832 -13.98274 -13.91275 -13.75728 -13.64024 -13.29167 -13.09791 -12.95763 -12.76539 -12.58504 -12.48453 -12.29144 -12.14006 -12.06081 -11.92754 -11.33075 -11.14805 -11.05399 -10.81142 -10.54717 -10.32529 -10.21762 -9.91339 -9.34635 -8.80519 -8.54623 -6.50044 -0.10621 0.09064 1.30936 1.38628 1.48457 1.53451 1.99719 2.24695 2.40286 2.55811 2.86316 3.07673 3.25483 3.28357 3.38512 3.60893 3.80611 3.85529 3.98727 4.01951 4.17321 4.23571 4.25575 4.30866 4.40450 4.47702 4.49870 4.58244 4.61205 4.63989 4.74922 4.84832 4.90817 4.95791 5.10892 5.11623 5.13280 5.16980 5.21576 5.34601 5.36623 5.55030 5.56961 5.76400 5.91672 5.93701 6.04406 6.29670 6.59905 6.83704 7.03658 7.40761 7.62124 8.43733 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.004519 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.070377 B = 6194.717830 C = 8656.001816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.032 3.968 3 Si 0.993 3.007 4 H -0.250 1.250 5 H -0.287 1.287 6 H -0.257 1.257 7 C -0.404 4.404 8 H 0.121 0.879 9 N -0.370 5.370 10 C 0.494 3.506 11 O -0.553 6.553 12 C -0.239 4.239 13 C -0.068 4.068 14 C -0.150 4.150 15 C -0.071 4.071 16 C -0.124 4.124 17 C 0.136 3.864 18 N -0.529 5.529 19 C 0.353 3.647 20 C 0.122 3.878 21 N -0.490 5.490 22 C 0.064 3.936 23 C -0.141 4.141 24 H 0.132 0.868 25 C -0.134 4.134 26 C -0.147 4.147 27 C 0.132 3.868 28 O -0.588 6.588 29 C 0.073 3.927 30 H 0.276 0.724 31 H 0.109 0.891 32 H 0.158 0.842 33 H 0.173 0.827 34 H 0.151 0.849 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.023 0.977 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.397 0.603 44 H 0.039 0.961 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 -16.190 -8.017 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.180 4.180 3 Si 0.813 3.187 4 H -0.174 1.174 5 H -0.213 1.213 6 H -0.181 1.181 7 C -0.531 4.531 8 H 0.138 0.862 9 N -0.074 5.074 10 C 0.291 3.709 11 O -0.431 6.431 12 C -0.246 4.246 13 C -0.088 4.088 14 C -0.168 4.168 15 C -0.091 4.091 16 C -0.144 4.144 17 C 0.021 3.979 18 N -0.255 5.255 19 C 0.089 3.911 20 C -0.007 4.007 21 N -0.214 5.214 22 C -0.063 4.063 23 C -0.160 4.160 24 H 0.150 0.850 25 C -0.171 4.171 26 C -0.148 4.148 27 C 0.055 3.945 28 O -0.397 6.397 29 C -0.054 4.054 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.175 0.825 33 H 0.190 0.810 34 H 0.169 0.831 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.041 0.959 39 H 0.146 0.854 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.247 0.753 44 H 0.057 0.943 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.711 -15.916 -7.506 17.984 hybrid contribution -0.113 2.377 0.253 2.393 sum 3.598 -13.539 -7.252 15.775 Atomic orbital electron populations 1.69925 1.09014 1.29793 1.39164 1.26398 0.95549 1.03891 0.92128 0.84990 0.78420 0.75783 0.79462 1.17438 1.21252 1.18080 1.19970 0.97636 0.84741 1.50704 0.86181 1.42356 1.34926 1.09260 1.20893 1.18868 0.82383 0.89033 0.80649 1.90583 1.63115 1.35152 1.54288 1.21007 1.06399 0.93840 1.03346 1.21009 0.94145 0.99090 0.94520 1.21350 1.02017 0.91304 1.02149 1.21577 0.95197 0.99510 0.92782 1.21009 0.98692 0.95324 0.99335 1.19349 0.93948 0.93575 0.90978 1.68546 1.15941 1.21927 1.19109 1.23283 0.93626 0.82246 0.91935 1.20808 0.97296 0.91163 0.91478 1.65417 1.05558 1.22635 1.27756 1.22653 0.92585 0.95876 0.95227 1.23534 0.95943 1.00478 0.96050 0.84996 1.23946 0.98949 1.03250 0.90976 1.23080 0.90754 0.98028 1.02935 1.21305 0.81446 0.91959 0.99802 1.86445 1.18581 1.39749 1.94882 1.22443 0.96545 0.95760 0.90637 0.91471 0.87285 0.82470 0.81001 0.83108 0.92247 0.87880 0.89400 0.95861 0.85428 0.89566 0.92890 0.91285 0.75288 0.94272 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.45 11.54 21.68 0.25 -50.20 16 2 C 0.03 1.73 4.36 84.98 0.37 2.10 16 3 Si 0.99 42.52 29.60 68.60 2.03 44.55 16 4 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.40 -21.70 8.24 84.07 0.69 -21.01 16 8 H 0.12 5.81 7.07 -2.91 -0.02 5.79 16 9 N -0.37 -20.04 2.68 -460.25 -1.23 -21.27 16 10 C 0.49 28.60 6.93 86.44 0.60 29.20 16 11 O -0.55 -35.33 14.28 -4.41 -0.06 -35.40 16 12 C -0.24 -11.78 5.89 -19.96 -0.12 -11.90 16 13 C -0.07 -2.86 9.68 22.44 0.22 -2.65 16 14 C -0.15 -4.61 10.02 22.32 0.22 -4.38 16 15 C -0.07 -1.93 10.00 22.30 0.22 -1.71 16 16 C -0.12 -4.11 10.03 22.48 0.23 -3.89 16 17 C 0.14 5.95 6.63 39.65 0.26 6.21 16 18 N -0.53 -23.28 7.57 -179.53 -1.36 -24.64 16 19 C 0.35 16.48 7.29 137.94 1.01 17.49 16 20 C 0.12 4.73 3.93 85.56 0.34 5.07 16 21 N -0.49 -16.23 4.98 -886.01 -4.41 -20.64 16 22 C 0.06 2.01 5.56 86.45 0.48 2.49 16 23 C -0.14 -3.24 6.88 -9.90 -0.07 -3.31 16 24 H 0.13 2.55 8.14 -2.38 -0.02 2.53 16 25 C -0.13 -2.60 10.09 32.00 0.32 -2.28 16 26 C -0.15 -3.32 2.86 -49.88 -0.14 -3.46 16 27 C 0.13 2.32 7.36 71.98 0.53 2.85 16 28 O -0.59 -10.72 13.07 -148.98 -1.95 -12.67 16 29 C 0.07 2.06 5.96 86.45 0.51 2.57 16 30 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.11 4.77 7.83 -2.91 -0.02 4.75 16 32 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.06 2.39 7.78 -2.39 -0.02 2.37 16 36 H 0.10 3.79 7.57 -2.39 -0.02 3.77 16 37 H 0.09 3.07 6.65 -2.39 -0.02 3.05 16 38 H 0.02 0.78 7.82 -2.39 -0.02 0.77 16 39 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.87 8.07 -2.39 -0.02 0.85 16 43 H 0.40 3.28 9.12 -74.05 -0.68 2.60 16 44 H 0.04 1.12 8.00 -2.38 -0.02 1.10 16 45 H 0.09 2.47 7.67 -2.39 -0.02 2.45 16 Total: -1.00 -77.10 369.37 -0.70 -77.79 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.36 Total: 29.07 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 5.68 Total: 13.40 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -6.75 Total: -116.75 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -2.01 Total: -48.07 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -77.10 -0.70 -77.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782618906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.068 kcal (2) G-P(sol) polarization free energy of solvation -77.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds