Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31262 * 1 3 3 Si 1.86799 * 119.99629 * 2 1 4 4 H 1.48501 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46992 * 299.99686 * 3 2 1 6 6 H 1.48504 * 109.47302 * 59.99472 * 3 2 1 7 7 C 1.39070 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99761 * 160.36868 * 7 2 1 9 9 N 1.37105 * 120.00395 * 340.37286 * 7 2 1 10 10 C 1.35343 * 119.71156 * 318.89852 * 9 7 2 11 11 O 1.21716 * 121.29376 * 359.97438 * 10 9 7 12 12 C 1.46965 * 117.42237 * 179.97438 * 10 9 7 13 13 C 1.39369 * 121.91423 * 179.97438 * 12 10 9 14 14 C 1.37801 * 119.51761 * 179.97438 * 13 12 10 15 15 C 1.38872 * 120.57516 * 0.25609 * 14 13 12 16 16 C 1.37713 * 120.82076 * 359.48333 * 15 14 13 17 17 C 1.39631 * 119.69520 * 0.50803 * 16 15 14 18 18 N 1.35633 * 121.61850 * 179.76668 * 17 16 15 19 19 C 1.29825 * 121.62529 * 179.97438 * 18 17 16 20 20 C 1.50706 * 118.34606 * 180.02562 * 19 18 17 21 21 N 1.46901 * 109.47424 * 0.02562 * 20 19 18 22 22 C 1.48564 * 110.99974 * 69.86961 * 21 20 19 23 23 C 1.54377 * 104.59140 * 159.04110 * 22 21 20 24 24 H 1.08997 * 117.60299 * 197.00719 * 23 22 21 25 25 C 1.53005 * 118.12730 * 41.49648 * 23 22 21 26 26 C 1.54259 * 105.06360 * 336.14898 * 23 22 21 27 27 C 1.52994 * 121.78805 * 222.12780 * 26 23 22 28 28 O 1.42898 * 109.47360 * 180.02562 * 27 26 23 29 29 C 1.48555 * 111.00092 * 185.29292 * 21 20 19 30 30 H 0.96996 * 120.00509 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.24278 * 359.95433 * 13 12 10 32 32 H 1.08000 * 119.70625 * 179.97438 * 14 13 12 33 33 H 1.07993 * 119.58664 * 179.72400 * 15 14 13 34 34 H 1.08005 * 120.15337 * 180.24238 * 16 15 14 35 35 H 1.09008 * 109.46873 * 120.00266 * 20 19 18 36 36 H 1.09002 * 109.47250 * 239.99899 * 20 19 18 37 37 H 1.09000 * 110.41168 * 277.82086 * 22 21 20 38 38 H 1.08997 * 110.41078 * 40.26741 * 22 21 20 39 39 H 1.08991 * 117.44600 * 15.97406 * 25 23 22 40 40 H 1.08999 * 117.44181 * 160.72787 * 25 23 22 41 41 H 1.09003 * 109.47025 * 300.00255 * 27 26 23 42 42 H 1.08998 * 109.47296 * 59.99594 * 27 26 23 43 43 H 0.96697 * 114.00138 * 180.02562 * 28 27 26 44 44 H 1.09000 * 110.41365 * 319.73282 * 29 21 20 45 45 H 1.08998 * 110.41674 * 82.18038 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2465 1.6178 0.0000 4 1 3.7065 1.3465 0.0006 5 1 1.8877 2.3964 -1.2126 6 1 1.8876 2.3966 1.2125 7 6 2.0080 -1.2044 0.0005 8 1 3.0409 -1.2316 -0.3137 9 7 1.3823 -2.3571 0.3999 10 6 0.5561 -2.3352 1.4716 11 8 0.3547 -1.3087 2.0938 12 6 -0.0885 -3.5990 1.8552 13 6 -0.9556 -3.6834 2.9431 14 6 -1.5334 -4.8940 3.2585 15 6 -1.2545 -6.0273 2.5059 16 6 -0.4047 -5.9643 1.4241 17 6 0.1933 -4.7492 1.0840 18 7 1.0398 -4.6438 0.0296 19 6 1.5956 -3.5141 -0.2870 20 6 2.5240 -3.4810 -1.4737 21 7 2.6119 -4.8232 -2.0643 22 6 1.3360 -5.1979 -2.7268 23 6 1.7266 -6.3134 -3.7200 24 1 1.0205 -6.5511 -4.5156 25 6 2.7247 -7.3759 -3.2553 26 6 3.2262 -6.0902 -4.0042 27 6 3.8056 -6.2099 -5.4151 28 8 5.2108 -5.9531 -5.3764 29 6 3.6157 -4.8585 -3.1588 30 1 -0.4851 0.8400 -0.0004 31 1 -1.1729 -2.8064 3.5347 32 1 -2.2055 -4.9629 4.1011 33 1 -1.7127 -6.9688 2.7700 34 1 -0.1984 -6.8516 0.8439 35 1 2.1394 -2.7820 -2.2165 36 1 3.5145 -3.1599 -1.1513 37 1 0.6231 -5.5744 -1.9933 38 1 0.9191 -4.3434 -3.2597 39 1 2.9089 -7.4579 -2.1842 40 1 2.7547 -8.3137 -3.8101 41 1 3.6309 -7.2164 -5.7954 42 1 3.3213 -5.4852 -6.0695 43 1 5.6452 -6.0115 -6.2383 44 1 3.5555 -3.9509 -3.7593 45 1 4.6191 -4.9795 -2.7507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782618913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = 28.468640 kcal Electronic energy + Delta-G solvation = -30112.739063 eV Core-core repulsion = 26097.061212 eV Total energy + Delta-G solvation = -4015.677852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.53110 -39.71158 -37.58387 -36.78742 -36.18332 -33.91036 -33.70015 -31.87307 -30.34671 -29.38960 -28.72157 -26.98097 -25.95744 -25.77741 -23.63479 -22.82780 -21.62413 -20.73341 -19.83168 -19.07515 -18.72377 -17.77325 -17.36261 -16.91364 -15.84757 -15.60690 -15.18858 -14.98423 -14.93779 -14.38087 -14.25303 -13.93868 -13.75691 -13.57921 -13.35122 -13.00889 -12.96129 -12.72450 -12.56848 -12.29794 -12.21859 -11.85485 -11.59226 -11.32561 -11.22275 -11.12650 -10.96722 -10.93137 -10.81731 -10.65118 -10.49443 -10.37181 -9.86692 -9.55492 -9.31312 -8.90174 -8.75096 -8.34104 -8.33421 -8.05317 -7.02215 -6.68204 -4.52251 1.53323 1.69906 3.03402 3.12796 3.16314 3.27101 3.52491 3.73348 3.92966 4.05946 4.11694 4.51021 4.63704 4.70052 4.84367 4.91928 5.03145 5.12446 5.15830 5.27584 5.38078 5.45218 5.47531 5.53394 5.62587 5.75584 5.81099 5.86769 5.91526 5.93851 6.01093 6.11250 6.11887 6.18106 6.22063 6.38469 6.45569 6.54098 6.72415 6.83891 7.04633 7.09508 7.14584 7.22431 7.30944 7.49542 7.53724 7.62827 8.13650 8.48260 8.73497 9.21973 9.53228 10.32899 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009099 B = 0.004590 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.496324 B = 6099.100962 C = 8824.980990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.079 3.921 3 Si 0.927 3.073 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.385 4.385 8 H 0.107 0.893 9 N -0.352 5.352 10 C 0.520 3.480 11 O -0.503 6.503 12 C -0.210 4.210 13 C -0.039 4.039 14 C -0.177 4.177 15 C -0.091 4.091 16 C -0.130 4.130 17 C 0.168 3.832 18 N -0.544 5.544 19 C 0.365 3.635 20 C 0.114 3.886 21 N -0.487 5.487 22 C 0.063 3.937 23 C -0.150 4.150 24 H 0.109 0.891 25 C -0.124 4.124 26 C -0.155 4.155 27 C 0.127 3.873 28 O -0.566 6.566 29 C 0.077 3.923 30 H 0.279 0.721 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.376 0.624 44 H 0.047 0.953 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 -11.165 -8.842 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.138 4.138 3 Si 0.751 3.249 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.511 4.511 8 H 0.125 0.875 9 N -0.056 5.056 10 C 0.314 3.686 11 O -0.377 6.377 12 C -0.218 4.218 13 C -0.058 4.058 14 C -0.196 4.196 15 C -0.110 4.110 16 C -0.150 4.150 17 C 0.052 3.948 18 N -0.272 5.272 19 C 0.101 3.899 20 C -0.015 4.015 21 N -0.211 5.211 22 C -0.065 4.065 23 C -0.169 4.169 24 H 0.127 0.873 25 C -0.161 4.161 26 C -0.155 4.155 27 C 0.049 3.951 28 O -0.371 6.371 29 C -0.051 4.051 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.061 0.939 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.222 0.778 44 H 0.065 0.935 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.149 -11.283 -7.698 14.018 hybrid contribution -0.170 2.083 -0.777 2.229 sum 2.979 -9.201 -8.475 12.859 Atomic orbital electron populations 1.69816 1.07195 1.29368 1.36378 1.25399 0.94968 1.00455 0.92949 0.85907 0.80052 0.80685 0.78238 1.18625 1.20314 1.19835 1.19621 0.96960 0.84195 1.50340 0.87499 1.42258 1.34462 1.08405 1.20446 1.18194 0.81743 0.88197 0.80456 1.90662 1.61047 1.33426 1.52550 1.20860 1.04903 0.94500 1.01499 1.20877 0.93040 0.97419 0.94499 1.20826 1.03905 0.92901 1.02006 1.20963 0.97313 0.97828 0.94943 1.20590 0.99530 0.96249 0.98644 1.18848 0.92718 0.92493 0.90785 1.68472 1.16714 1.22525 1.19466 1.22618 0.93218 0.82951 0.91075 1.20876 0.98101 0.89740 0.92815 1.65234 1.05098 1.24685 1.26088 1.22730 0.93406 0.94945 0.95380 1.23509 0.91354 1.00518 1.01495 0.87321 1.23530 1.00253 0.90789 1.01541 1.22902 0.98365 0.98327 0.95951 1.21340 0.81262 0.98559 0.93896 1.86534 1.21031 1.94240 1.35291 1.22360 0.97194 0.94384 0.91175 0.91043 0.85994 0.86706 0.86580 0.85749 0.91301 0.88460 0.87542 0.93905 0.87392 0.89033 0.93588 0.93585 0.77781 0.93515 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.17 11.54 55.50 0.64 -21.53 16 2 C 0.08 2.04 4.36 -17.49 -0.08 1.97 16 3 Si 0.93 19.79 29.60 -169.99 -5.03 14.76 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.38 -9.73 8.24 -14.88 -0.12 -9.86 16 8 H 0.11 2.47 7.07 -52.49 -0.37 2.10 16 9 N -0.35 -8.96 2.68 -59.56 -0.16 -9.12 16 10 C 0.52 14.05 6.93 -12.47 -0.09 13.97 16 11 O -0.50 -14.89 14.28 5.17 0.07 -14.82 16 12 C -0.21 -4.99 5.89 -104.77 -0.62 -5.60 16 13 C -0.04 -0.81 9.68 -39.32 -0.38 -1.19 16 14 C -0.18 -3.04 10.02 -39.51 -0.40 -3.43 16 15 C -0.09 -1.46 10.00 -39.54 -0.40 -1.86 16 16 C -0.13 -2.36 10.03 -39.25 -0.39 -2.76 16 17 C 0.17 3.66 6.63 -84.50 -0.56 3.10 16 18 N -0.54 -11.71 7.57 -8.10 -0.06 -11.77 16 19 C 0.36 8.11 7.29 -154.88 -1.13 6.98 16 20 C 0.11 2.11 3.94 -4.97 -0.02 2.09 16 21 N -0.49 -7.95 4.60 -231.40 -1.07 -9.01 16 22 C 0.06 0.98 5.66 -2.18 -0.01 0.96 16 23 C -0.15 -1.86 6.93 -89.24 -0.62 -2.48 16 24 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 25 C -0.12 -1.49 9.88 -24.55 -0.24 -1.73 16 26 C -0.15 -1.91 2.90 -150.95 -0.44 -2.34 16 27 C 0.13 1.25 7.39 37.15 0.27 1.53 16 28 O -0.57 -5.77 13.36 -35.23 -0.47 -6.24 16 29 C 0.08 1.09 5.86 -2.18 -0.01 1.08 16 30 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.12 2.53 7.83 -52.49 -0.41 2.12 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 35 H 0.07 1.29 7.78 -51.92 -0.40 0.88 16 36 H 0.10 1.71 7.57 -51.93 -0.39 1.32 16 37 H 0.11 1.85 6.65 -51.93 -0.35 1.51 16 38 H 0.04 0.68 7.82 -51.93 -0.41 0.28 16 39 H 0.11 1.48 8.06 -51.93 -0.42 1.07 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.38 8.07 -51.93 -0.42 -0.04 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.38 1.96 9.12 45.56 0.42 2.37 16 44 H 0.05 0.66 8.00 -51.93 -0.42 0.24 16 45 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -32.08 369.60 -10.99 -43.07 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.26 Total: 8.69 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -5.23 Total: 0.41 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.65 Total: -51.44 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.40 Total: -21.06 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.08 -10.99 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782618913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.542 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds