Wall clock time and date at job start Sat Apr 11 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00068 * 2 1 4 4 H 1.48500 * 109.47139 * 239.99395 * 3 2 1 5 5 H 1.48502 * 109.47297 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47240 * 119.99649 * 3 2 1 7 7 C 1.37882 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47206 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47494 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46933 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99402 * 180.02562 * 12 11 10 14 14 O 1.21341 * 120.00377 * 359.97438 * 13 12 11 15 15 C 1.49455 * 119.99600 * 179.97438 * 13 12 11 16 16 O 1.21348 * 120.00328 * 359.97438 * 15 13 12 17 17 N 1.34771 * 119.99749 * 179.97438 * 15 13 12 18 18 C 1.46504 * 119.99947 * 179.97438 * 17 15 13 19 19 C 1.50699 * 109.47416 * 180.02562 * 18 17 15 20 20 C 1.36178 * 120.19431 * 260.00872 * 19 18 17 21 21 C 1.39313 * 120.86990 * 179.97438 * 20 19 18 22 22 C 1.36109 * 121.06827 * 359.97438 * 21 20 19 23 23 C 1.40554 * 119.74449 * 0.27978 * 22 21 20 24 24 N 1.33689 * 121.07244 * 180.27964 * 23 22 21 25 25 C 1.31084 * 121.32245 * 179.74423 * 24 23 22 26 26 C 1.39331 * 121.74804 * 359.69691 * 25 24 23 27 27 C 1.36566 * 119.94360 * 0.02562 * 26 25 24 28 28 C 1.40393 * 120.19573 * 79.98018 * 19 18 17 29 29 H 0.96997 * 119.99872 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 60.00353 * 9 7 2 31 31 H 1.08999 * 109.47333 * 299.99626 * 9 7 2 32 32 H 1.09004 * 109.47010 * 60.00007 * 10 9 7 33 33 H 1.09005 * 109.47281 * 300.00268 * 10 9 7 34 34 H 1.09001 * 109.46969 * 60.00564 * 11 10 9 35 35 H 1.08999 * 109.47271 * 300.00013 * 11 10 9 36 36 H 0.96995 * 120.00490 * 359.97438 * 12 11 10 37 37 H 0.97003 * 120.00350 * 0.02562 * 17 15 13 38 38 H 1.09004 * 109.46901 * 60.00499 * 18 17 15 39 39 H 1.08999 * 109.47148 * 300.00549 * 18 17 15 40 40 H 1.08007 * 119.56281 * 359.94395 * 20 19 18 41 41 H 1.08007 * 119.46405 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.12383 * 179.97438 * 22 21 20 43 43 H 1.08003 * 119.12024 * 179.72520 * 25 24 23 44 44 H 1.08001 * 120.02335 * 179.97438 * 26 25 24 45 45 H 1.08007 * 120.92795 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0018 13 6 1.9828 -7.3713 0.0019 14 8 0.7898 -7.5931 0.0020 15 6 2.9540 -8.5073 0.0020 16 8 4.1471 -8.2857 0.0014 17 7 2.5047 -9.7779 0.0026 18 6 3.4567 -10.8915 0.0021 19 6 2.7032 -12.1966 0.0023 20 6 2.5381 -12.8919 1.1615 21 6 1.8437 -14.0995 1.1780 22 6 1.3103 -14.6187 0.0385 23 6 1.4642 -13.9331 -1.1788 24 7 0.9465 -14.4159 -2.3129 25 6 1.0829 -13.7781 -3.4500 26 6 1.7658 -12.5665 -3.5337 27 6 2.3146 -12.0144 -2.4116 28 6 2.1668 -12.7025 -1.1924 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.8718 -3.6044 0.8906 33 1 2.8719 -3.6044 -0.8895 34 1 0.8533 -5.0452 -0.8886 35 1 0.8538 -5.0446 0.8914 36 1 3.3858 -5.9235 0.0014 37 1 1.5510 -9.9552 0.0026 38 1 4.0840 -10.8336 0.8916 39 1 4.0827 -10.8340 -0.8884 40 1 2.9515 -12.5023 2.0801 41 1 1.7266 -14.6324 2.1102 42 1 0.7751 -15.5563 0.0687 43 1 0.6540 -14.2029 -4.3456 44 1 1.8618 -12.0650 -4.4853 45 1 2.8470 -11.0758 -2.4582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875178148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:50 Heat of formation + Delta-G solvation = -28.875874 kcal Electronic energy + Delta-G solvation = -27295.171671 eV Core-core repulsion = 23277.007174 eV Total energy + Delta-G solvation = -4018.164496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47803 -40.60030 -38.67402 -37.78425 -35.98751 -35.39014 -33.65671 -33.27635 -31.27375 -31.06407 -31.01581 -27.72194 -26.75472 -24.75335 -24.25323 -24.06357 -22.52764 -21.37199 -20.81880 -20.23629 -18.80787 -18.36863 -17.54288 -17.39677 -17.00367 -16.37159 -16.10441 -15.69881 -15.26584 -15.13530 -14.97137 -14.77050 -14.62900 -14.47117 -14.08092 -13.93313 -13.75706 -13.49723 -13.34821 -12.84786 -12.32382 -12.27300 -12.07688 -11.92130 -11.83107 -11.78884 -11.75826 -11.01405 -10.90814 -10.78504 -10.64888 -9.97626 -9.92347 -9.85148 -9.62500 -9.42441 -9.26195 -9.16824 -9.02318 -8.74564 -8.39242 -6.04137 -4.07329 -0.16288 0.33966 1.34333 1.40777 2.23741 2.53032 3.15551 3.31269 3.35971 3.38051 3.54720 3.74002 3.81257 3.88754 4.21956 4.29629 4.33048 4.41619 4.46022 4.52964 4.65760 4.77910 4.90257 5.05639 5.08468 5.31698 5.34253 5.42793 5.52830 5.56060 5.59082 5.66017 5.80659 5.84974 5.92617 6.03746 6.04991 6.22669 6.33034 6.51168 6.64802 6.82853 6.92602 7.32859 7.43962 7.59503 7.63414 7.71193 7.93828 7.99677 8.35044 8.98917 9.56999 11.07054 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.001629 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.418384 B =17185.026974 C =17589.980205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.690 5.690 13 C 0.500 3.500 14 O -0.525 6.525 15 C 0.509 3.491 16 O -0.518 6.518 17 N -0.702 5.702 18 C 0.158 3.842 19 C -0.090 4.090 20 C -0.088 4.088 21 C -0.103 4.103 22 C -0.082 4.082 23 C 0.124 3.876 24 N -0.474 5.474 25 C 0.133 3.867 26 C -0.170 4.170 27 C -0.059 4.059 28 C -0.087 4.087 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.411 0.589 37 H 0.415 0.585 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.161 0.839 44 H 0.140 0.860 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -32.166 -2.088 32.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.342 5.342 13 C 0.279 3.721 14 O -0.402 6.402 15 C 0.290 3.710 16 O -0.393 6.393 17 N -0.356 5.356 18 C 0.036 3.964 19 C -0.092 4.092 20 C -0.107 4.107 21 C -0.123 4.123 22 C -0.101 4.101 23 C 0.002 3.998 24 N -0.182 5.182 25 C -0.040 4.040 26 C -0.190 4.190 27 C -0.085 4.085 28 C -0.089 4.089 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.251 0.749 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.178 0.822 44 H 0.158 0.842 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.820 -32.826 -1.943 33.235 hybrid contribution 0.860 1.738 -0.113 1.942 sum 5.679 -31.088 -2.057 31.670 Atomic orbital electron populations 1.69952 1.06054 1.26847 1.50416 1.25029 0.94874 0.99327 0.95217 0.86625 0.79547 0.83005 0.78623 1.20233 1.21269 1.20224 1.21160 0.93016 0.90886 1.51153 0.92614 1.19028 0.93793 0.90770 0.97717 1.21932 0.99886 0.92936 1.01321 1.21857 0.91727 0.84696 1.02565 1.46073 1.12249 1.04951 1.70950 1.19960 0.88418 0.84487 0.79202 1.90771 1.15970 1.84656 1.48762 1.20395 0.88840 0.84256 0.77481 1.90773 1.16172 1.84722 1.47655 1.45830 1.11622 1.04400 1.73757 1.20283 0.90727 0.81327 1.04097 1.19589 1.00174 0.96545 0.92868 1.20950 0.97412 0.94673 0.97669 1.20938 0.97026 0.95707 0.98628 1.20897 0.98940 0.99979 0.90303 1.18892 0.95743 0.92064 0.93067 1.68073 1.18467 1.33302 0.98336 1.23020 0.93683 0.91455 0.95815 1.21963 0.99516 0.97482 0.99994 1.21569 0.96339 0.99032 0.91510 1.18670 1.00035 0.96001 0.94221 0.92849 0.96205 0.96190 0.92413 0.92413 0.91067 0.91060 0.75291 0.74858 0.89434 0.89781 0.84916 0.84771 0.84469 0.82181 0.84198 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.11 1.91 5.67 -4.04 -0.02 1.88 16 12 N -0.69 -9.99 5.55 -60.73 -0.34 -10.33 16 13 C 0.50 7.17 7.89 -11.58 -0.09 7.08 16 14 O -0.52 -8.70 16.48 5.50 0.09 -8.61 16 15 C 0.51 6.21 7.89 -11.59 -0.09 6.11 16 16 O -0.52 -7.17 16.48 5.50 0.09 -7.08 16 17 N -0.70 -6.60 5.54 -61.91 -0.34 -6.94 16 18 C 0.16 1.19 5.08 -5.19 -0.03 1.16 16 19 C -0.09 -0.66 5.25 -104.55 -0.55 -1.21 16 20 C -0.09 -0.54 9.58 -39.92 -0.38 -0.93 16 21 C -0.10 -0.60 9.94 -39.95 -0.40 -1.00 16 22 C -0.08 -0.61 9.98 -39.47 -0.39 -1.00 16 23 C 0.12 1.14 6.60 -84.86 -0.56 0.58 16 24 N -0.47 -4.53 10.34 -10.98 -0.11 -4.65 16 25 C 0.13 0.96 11.15 -17.46 -0.19 0.77 16 26 C -0.17 -1.13 10.03 -39.78 -0.40 -1.52 16 27 C -0.06 -0.45 9.37 -39.23 -0.37 -0.81 16 28 C -0.09 -0.74 5.74 -106.80 -0.61 -1.35 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.41 5.39 7.94 -40.82 -0.32 5.07 16 37 H 0.41 3.87 7.94 -40.82 -0.32 3.55 16 38 H 0.09 0.61 7.98 -51.93 -0.41 0.20 16 39 H 0.08 0.62 7.02 -51.93 -0.36 0.25 16 40 H 0.13 0.57 8.01 -52.48 -0.42 0.15 16 41 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.16 0.68 8.06 -52.48 -0.42 0.26 16 44 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 45 H 0.14 0.95 6.69 -52.48 -0.35 0.59 16 LS Contribution 390.23 15.07 5.88 5.88 Total: -1.00 -33.63 390.23 -9.76 -43.40 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.97 Total: 3.29 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -4.78 Total: -5.52 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.06 Total: -47.71 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.18 Total: -15.69 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.63 -9.76 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875178148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.522 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds