Wall clock time and date at job start Sat Apr 11 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00068 * 2 1 4 4 H 1.48500 * 109.47139 * 239.99395 * 3 2 1 5 5 H 1.48502 * 109.47297 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47240 * 119.99649 * 3 2 1 7 7 C 1.37882 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47206 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47494 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46933 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99402 * 180.02562 * 12 11 10 14 14 O 1.21341 * 120.00377 * 359.97438 * 13 12 11 15 15 C 1.49455 * 119.99600 * 179.97438 * 13 12 11 16 16 O 1.21348 * 120.00328 * 359.97438 * 15 13 12 17 17 N 1.34771 * 119.99749 * 179.97438 * 15 13 12 18 18 C 1.46504 * 119.99947 * 179.97438 * 17 15 13 19 19 C 1.50699 * 109.47416 * 180.02562 * 18 17 15 20 20 C 1.36178 * 120.19431 * 260.00872 * 19 18 17 21 21 C 1.39313 * 120.86990 * 179.97438 * 20 19 18 22 22 C 1.36109 * 121.06827 * 359.97438 * 21 20 19 23 23 C 1.40554 * 119.74449 * 0.27978 * 22 21 20 24 24 N 1.33689 * 121.07244 * 180.27964 * 23 22 21 25 25 C 1.31084 * 121.32245 * 179.74423 * 24 23 22 26 26 C 1.39331 * 121.74804 * 359.69691 * 25 24 23 27 27 C 1.36566 * 119.94360 * 0.02562 * 26 25 24 28 28 C 1.40393 * 120.19573 * 79.98018 * 19 18 17 29 29 H 0.96997 * 119.99872 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 60.00353 * 9 7 2 31 31 H 1.08999 * 109.47333 * 299.99626 * 9 7 2 32 32 H 1.09004 * 109.47010 * 60.00007 * 10 9 7 33 33 H 1.09005 * 109.47281 * 300.00268 * 10 9 7 34 34 H 1.09001 * 109.46969 * 60.00564 * 11 10 9 35 35 H 1.08999 * 109.47271 * 300.00013 * 11 10 9 36 36 H 0.96995 * 120.00490 * 359.97438 * 12 11 10 37 37 H 0.97003 * 120.00350 * 0.02562 * 17 15 13 38 38 H 1.09004 * 109.46901 * 60.00499 * 18 17 15 39 39 H 1.08999 * 109.47148 * 300.00549 * 18 17 15 40 40 H 1.08007 * 119.56281 * 359.94395 * 20 19 18 41 41 H 1.08007 * 119.46405 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.12383 * 179.97438 * 22 21 20 43 43 H 1.08003 * 119.12024 * 179.72520 * 25 24 23 44 44 H 1.08001 * 120.02335 * 179.97438 * 26 25 24 45 45 H 1.08007 * 120.92795 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0018 13 6 1.9828 -7.3713 0.0019 14 8 0.7898 -7.5931 0.0020 15 6 2.9540 -8.5073 0.0020 16 8 4.1471 -8.2857 0.0014 17 7 2.5047 -9.7779 0.0026 18 6 3.4567 -10.8915 0.0021 19 6 2.7032 -12.1966 0.0023 20 6 2.5381 -12.8919 1.1615 21 6 1.8437 -14.0995 1.1780 22 6 1.3103 -14.6187 0.0385 23 6 1.4642 -13.9331 -1.1788 24 7 0.9465 -14.4159 -2.3129 25 6 1.0829 -13.7781 -3.4500 26 6 1.7658 -12.5665 -3.5337 27 6 2.3146 -12.0144 -2.4116 28 6 2.1668 -12.7025 -1.1924 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.8718 -3.6044 0.8906 33 1 2.8719 -3.6044 -0.8895 34 1 0.8533 -5.0452 -0.8886 35 1 0.8538 -5.0446 0.8914 36 1 3.3858 -5.9235 0.0014 37 1 1.5510 -9.9552 0.0026 38 1 4.0840 -10.8336 0.8916 39 1 4.0827 -10.8340 -0.8884 40 1 2.9515 -12.5023 2.0801 41 1 1.7266 -14.6324 2.1102 42 1 0.7751 -15.5563 0.0687 43 1 0.6540 -14.2029 -4.3456 44 1 1.8618 -12.0650 -4.4853 45 1 2.8470 -11.0758 -2.4582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875178148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:49 Heat of formation + Delta-G solvation = -51.730926 kcal Electronic energy + Delta-G solvation = -27296.162740 eV Core-core repulsion = 23277.007174 eV Total energy + Delta-G solvation = -4019.155566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.08685 -41.58782 -39.73687 -38.37034 -37.22218 -36.34513 -35.22330 -34.20981 -33.04116 -31.64285 -31.53970 -29.10320 -27.85905 -25.78748 -25.17566 -24.60350 -23.93083 -22.36967 -21.97252 -21.37210 -19.72360 -19.04032 -18.52267 -18.09002 -17.98735 -17.93124 -17.19805 -16.74600 -16.45218 -16.21306 -16.19675 -15.65196 -15.38938 -15.29693 -15.06853 -14.93585 -14.50935 -14.26468 -14.25781 -13.85516 -13.78319 -13.59927 -13.44930 -12.96221 -12.73711 -12.72693 -12.57293 -12.54460 -12.43511 -12.26981 -11.69217 -11.59782 -11.53811 -11.24966 -10.77439 -10.53858 -10.52085 -10.43454 -10.29250 -9.77760 -9.29526 -8.18997 -6.29972 -0.69088 -0.18196 0.28086 0.80872 1.34904 1.42643 1.44975 1.52917 1.94539 2.08062 2.42104 2.63672 3.10315 3.14817 3.30573 3.34927 3.40735 3.73435 3.78582 3.82574 4.03397 4.08446 4.18298 4.19504 4.27651 4.46734 4.52171 4.52791 4.56911 4.81756 4.86465 4.91762 4.92235 4.99955 5.04686 5.10726 5.15313 5.22807 5.36179 5.41420 5.51795 5.54227 5.71053 5.83321 5.84746 5.85421 6.22576 6.28301 6.64703 6.86851 6.88195 6.89030 7.39330 8.92604 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.001629 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.418384 B =17185.026974 C =17589.980205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.685 5.685 13 C 0.501 3.499 14 O -0.549 6.549 15 C 0.519 3.481 16 O -0.534 6.534 17 N -0.686 5.686 18 C 0.161 3.839 19 C -0.098 4.098 20 C -0.086 4.086 21 C -0.097 4.097 22 C -0.098 4.098 23 C 0.097 3.903 24 N -0.502 5.502 25 C 0.125 3.875 26 C -0.170 4.170 27 C -0.072 4.072 28 C -0.100 4.100 29 H 0.263 0.737 30 H -0.004 1.004 31 H -0.004 1.004 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.420 0.580 37 H 0.416 0.584 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.143 0.857 43 H 0.186 0.814 44 H 0.164 0.836 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.074 -32.741 -1.772 33.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.337 5.337 13 C 0.281 3.719 14 O -0.427 6.427 15 C 0.299 3.701 16 O -0.411 6.411 17 N -0.339 5.339 18 C 0.039 3.961 19 C -0.100 4.100 20 C -0.104 4.104 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.023 4.023 24 N -0.211 5.211 25 C -0.047 4.047 26 C -0.190 4.190 27 C -0.098 4.098 28 C -0.102 4.102 29 H 0.072 0.928 30 H 0.014 0.986 31 H 0.014 0.986 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.258 0.742 37 H 0.253 0.747 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.173 0.827 41 H 0.180 0.820 42 H 0.161 0.839 43 H 0.203 0.797 44 H 0.182 0.818 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.504 -33.441 -1.626 34.107 hybrid contribution 0.295 1.818 -0.220 1.855 sum 6.799 -31.623 -1.847 32.398 Atomic orbital electron populations 1.70093 1.07804 1.27831 1.51576 1.25989 0.95760 1.03417 0.94811 0.85495 0.78215 0.78106 0.79191 1.19157 1.21121 1.19151 1.21654 0.93729 0.92116 1.50600 0.91712 1.18935 0.94371 0.92626 0.95399 1.21641 0.98612 0.91836 1.02278 1.21473 0.91604 0.84567 1.01953 1.45872 1.12278 1.04604 1.70989 1.20347 0.88498 0.84837 0.78196 1.90763 1.17189 1.85040 1.49754 1.19859 0.87927 0.84373 0.77924 1.90776 1.16377 1.84891 1.49047 1.45824 1.12122 1.03943 1.72003 1.20397 0.90323 0.80559 1.04798 1.19573 1.00753 0.96589 0.93037 1.21275 0.96580 0.94483 0.98063 1.21258 0.95749 0.95499 0.99165 1.21121 0.99631 1.00460 0.90423 1.19235 0.96559 0.92856 0.93687 1.68084 1.19524 1.34334 0.99141 1.23515 0.93430 0.91673 0.96118 1.22255 0.98661 0.97250 1.00787 1.21750 0.96840 0.99399 0.91790 1.18832 1.00335 0.96068 0.95003 0.92810 0.98570 0.98568 0.91401 0.91381 0.91775 0.91790 0.74245 0.74674 0.88294 0.89453 0.82737 0.82024 0.83874 0.79716 0.81833 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 43.56 29.54 68.60 2.03 45.58 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.11 -3.98 5.27 30.59 0.16 -3.82 16 11 C 0.13 4.23 5.67 86.38 0.49 4.72 16 12 N -0.69 -19.11 5.55 -464.41 -2.58 -21.68 16 13 C 0.50 13.89 7.89 87.27 0.69 14.57 16 14 O -0.55 -17.95 16.48 -3.22 -0.05 -18.00 16 15 C 0.52 11.90 7.89 87.27 0.69 12.59 16 16 O -0.53 -13.85 16.48 -3.24 -0.05 -13.91 16 17 N -0.69 -11.91 5.54 -468.13 -2.59 -14.50 16 18 C 0.16 2.14 5.08 85.63 0.43 2.58 16 19 C -0.10 -1.30 5.25 -19.82 -0.10 -1.41 16 20 C -0.09 -0.88 9.58 22.05 0.21 -0.67 16 21 C -0.10 -0.96 9.94 22.03 0.22 -0.74 16 22 C -0.10 -1.39 9.98 22.34 0.22 -1.17 16 23 C 0.10 1.79 6.60 40.28 0.27 2.06 16 24 N -0.50 -9.64 10.34 -188.64 -1.95 -11.59 16 25 C 0.12 1.75 11.15 85.07 0.95 2.70 16 26 C -0.17 -2.11 10.03 22.14 0.22 -1.89 16 27 C -0.07 -1.05 9.37 22.50 0.21 -0.84 16 28 C -0.10 -1.64 5.74 -21.28 -0.12 -1.77 16 29 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 31 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 36 H 0.42 10.34 7.94 -92.71 -0.74 9.61 16 37 H 0.42 7.29 7.94 -92.71 -0.74 6.55 16 38 H 0.10 1.15 7.98 -2.38 -0.02 1.13 16 39 H 0.09 1.15 7.02 -2.39 -0.02 1.13 16 40 H 0.15 0.86 8.01 -2.91 -0.02 0.84 16 41 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 42 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 44 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 45 H 0.14 1.84 6.69 -2.91 -0.02 1.82 16 Total: -1.00 -72.70 390.23 0.03 -72.67 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -0.43 Total: 18.50 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 5.38 Total: -1.10 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -6.84 Total: -103.74 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.11 Total: -31.90 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -72.70 0.03 -72.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875178148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.939 kcal (2) G-P(sol) polarization free energy of solvation -72.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds