Wall clock time and date at job start Sat Apr 11 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48501 * 109.47334 * 273.32136 * 3 2 1 5 5 H 1.48500 * 109.47313 * 33.31907 * 3 2 1 6 6 H 1.48498 * 109.47258 * 153.31976 * 3 2 1 7 7 C 1.38949 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99752 * 340.56985 * 7 2 1 9 9 N 1.37091 * 120.00331 * 160.56636 * 7 2 1 10 10 C 1.34783 * 120.00414 * 293.34946 * 9 7 2 11 11 O 1.21283 * 119.99993 * 182.34653 * 10 9 7 12 12 C 1.50700 * 119.99447 * 2.34830 * 10 9 7 13 13 H 1.08997 * 108.79846 * 51.03369 * 12 10 9 14 14 C 1.52479 * 108.74217 * 292.64238 * 12 10 9 15 15 C 1.54652 * 109.30604 * 176.14863 * 14 12 10 16 16 H 1.08997 * 113.98550 * 196.07720 * 15 14 12 17 17 C 1.54875 * 105.40852 * 322.61011 * 15 14 12 18 18 C 1.52569 * 111.46225 * 81.33008 * 17 15 14 19 19 C 1.54875 * 111.47313 * 359.93380 * 18 17 15 20 20 H 1.09000 * 114.59878 * 152.61884 * 19 18 17 21 21 C 1.52479 * 108.82375 * 169.46688 * 12 10 9 22 22 S 1.84204 * 102.17511 * 28.59695 * 19 18 17 23 23 O 1.42101 * 110.07992 * 207.56753 * 22 19 18 24 24 O 1.42102 * 110.09773 * 72.43388 * 22 19 18 25 25 C 1.46507 * 120.00106 * 113.34730 * 9 7 2 26 26 C 1.54264 * 110.03033 * 63.13531 * 25 9 7 27 27 C 1.54970 * 104.15666 * 217.14032 * 26 25 9 28 28 C 1.54892 * 102.78003 * 37.88794 * 27 26 25 29 29 C 1.53881 * 110.02991 * 305.91799 * 25 9 7 30 30 H 0.97002 * 119.99769 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.50058 * 296.10241 * 14 12 10 32 32 H 1.09006 * 109.50002 * 56.19922 * 14 12 10 33 33 H 1.09003 * 109.08686 * 201.82629 * 17 15 14 34 34 H 1.08995 * 109.08889 * 320.75535 * 17 15 14 35 35 H 1.08996 * 109.04942 * 239.42879 * 18 17 15 36 36 H 1.09004 * 109.13035 * 120.48968 * 18 17 15 37 37 H 1.08999 * 109.49840 * 303.75554 * 21 12 10 38 38 H 1.09004 * 109.49623 * 63.81826 * 21 12 10 39 39 H 1.08997 * 110.01796 * 184.52442 * 25 9 7 40 40 H 1.09001 * 110.48459 * 335.78101 * 26 25 9 41 41 H 1.08995 * 110.48828 * 98.42836 * 26 25 9 42 42 H 1.09005 * 110.71854 * 279.57104 * 27 26 25 43 43 H 1.09001 * 110.92294 * 156.29643 * 27 26 25 44 44 H 1.08995 * 110.48696 * 203.40849 * 28 27 26 45 45 H 1.08999 * 110.48695 * 80.75846 * 28 27 26 46 46 H 1.09003 * 110.02949 * 238.56947 * 29 25 9 47 47 H 1.09000 * 110.02979 * 359.97438 * 29 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4255 2.0870 -1.3977 5 1 1.4825 2.6314 0.7690 6 1 3.5790 1.4209 0.6286 7 6 2.0089 -1.2033 -0.0005 8 1 1.5149 -2.1122 0.3102 9 7 3.3212 -1.2371 -0.3956 10 6 3.6462 -0.9754 -1.6772 11 8 4.8025 -1.0469 -2.0363 12 6 2.5729 -0.5940 -2.6638 13 1 1.9804 0.2179 -2.2420 14 6 1.6659 -1.7985 -2.8910 15 6 0.5029 -1.3935 -3.8266 16 1 -0.3324 -2.0938 -3.8238 17 6 0.1321 0.0540 -3.4193 18 6 1.0748 1.0715 -4.0548 19 6 2.1469 0.3800 -4.9328 20 1 2.5294 0.9930 -5.7489 21 6 3.2355 -0.1043 -3.9468 22 16 1.2743 -1.1468 -5.4811 23 8 2.2150 -2.1799 -5.7403 24 8 0.2780 -0.8218 -6.4408 25 6 4.3705 -1.5575 0.5754 26 6 4.1774 -2.9924 1.1078 27 6 4.5753 -2.8988 2.6026 28 6 4.0161 -1.5160 3.0201 29 6 4.2684 -0.6190 1.7906 30 1 -0.4850 0.8401 0.0004 31 1 2.2388 -2.6039 -3.3504 32 1 1.2637 -2.1364 -1.9359 33 1 -0.8880 0.2645 -3.7406 34 1 0.1877 0.1444 -2.3346 35 1 1.5707 1.6378 -3.2665 36 1 0.4957 1.7573 -4.6733 37 1 3.9102 0.7201 -3.7161 38 1 3.7993 -0.9201 -4.3994 39 1 5.3514 -1.4607 0.1102 40 1 3.1360 -3.2990 1.0090 41 1 4.8321 -3.6863 0.5807 42 1 5.6591 -2.9274 2.7157 43 1 4.1070 -3.6954 3.1808 44 1 4.5532 -1.1335 3.8880 45 1 2.9487 -1.5837 3.2302 46 1 5.2002 -0.0674 1.9157 47 1 3.4385 0.0750 1.6577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889085319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:01 Heat of formation + Delta-G solvation = -92.785630 kcal Electronic energy + Delta-G solvation = -31108.071208 eV Core-core repulsion = 27190.286577 eV Total energy + Delta-G solvation = -3917.784631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -40.25980 -38.39418 -36.91123 -36.68114 -35.70306 -34.34798 -31.99795 -31.72662 -31.29457 -28.17293 -27.51592 -25.94383 -24.69669 -24.07443 -21.33886 -20.50283 -20.27666 -19.38675 -19.11538 -18.15662 -17.62312 -17.13690 -16.30066 -15.62817 -15.46121 -15.31015 -14.85076 -14.65499 -14.26119 -13.94497 -13.87142 -13.33888 -13.27216 -13.11313 -12.81798 -12.53133 -12.46447 -12.08221 -12.00589 -11.85446 -11.81426 -11.75744 -11.50253 -11.35695 -11.24183 -11.07583 -10.89903 -10.61337 -10.56664 -10.49843 -10.19222 -10.14024 -10.11227 -9.97640 -9.86160 -9.61182 -9.47767 -8.99278 -8.64507 -7.50897 -6.66201 -4.51513 0.37072 2.67808 2.88972 3.06151 3.13847 3.54798 3.84672 3.93159 4.01309 4.33271 4.62098 4.64993 4.77454 4.95602 5.02419 5.17754 5.18279 5.23842 5.33914 5.37885 5.48471 5.49388 5.60898 5.90572 5.95671 5.99188 6.08076 6.12028 6.12339 6.16275 6.18568 6.20937 6.22907 6.29117 6.37443 6.39251 6.40879 6.56480 6.57240 6.78903 6.82180 6.89383 6.93991 7.00409 7.52652 7.78011 8.29875 8.84203 9.09653 9.59169 10.40219 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.005132 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.365005 B = 5454.296078 C = 6043.700227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.083 3.917 3 Si 0.827 3.173 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.241 1.241 7 C -0.339 4.339 8 H 0.099 0.901 9 N -0.469 5.469 10 C 0.505 3.495 11 O -0.587 6.587 12 C -0.118 4.118 13 H 0.117 0.883 14 C -0.102 4.102 15 C -0.503 4.503 16 H 0.149 0.851 17 C -0.136 4.136 18 C -0.122 4.122 19 C -0.530 4.530 20 H 0.146 0.854 21 C -0.097 4.097 22 S 2.348 3.652 23 O -0.933 6.933 24 O -0.947 6.947 25 C 0.128 3.872 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.116 4.116 29 C -0.135 4.135 30 H 0.276 0.724 31 H 0.076 0.924 32 H 0.131 0.869 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 0.710 -1.191 1.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.125 4.125 3 Si 0.652 3.348 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.165 1.165 7 C -0.466 4.466 8 H 0.117 0.883 9 N -0.190 5.190 10 C 0.294 3.706 11 O -0.470 6.470 12 C -0.139 4.139 13 H 0.135 0.865 14 C -0.140 4.140 15 C -0.615 4.615 16 H 0.167 0.833 17 C -0.174 4.174 18 C -0.161 4.161 19 C -0.640 4.640 20 H 0.164 0.836 21 C -0.136 4.136 22 S 2.534 3.466 23 O -0.930 6.930 24 O -0.944 6.944 25 C 0.024 3.976 26 C -0.163 4.163 27 C -0.159 4.159 28 C -0.154 4.154 29 C -0.173 4.173 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.149 0.851 33 H 0.096 0.904 34 H 0.145 0.855 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.253 0.251 -2.255 2.592 hybrid contribution 0.259 1.647 0.926 1.907 sum 1.512 1.898 -1.329 2.767 Atomic orbital electron populations 1.69723 1.05918 1.28185 1.44657 1.25689 0.94988 0.97909 0.93892 0.87792 0.82799 0.84615 0.79599 1.19437 1.20684 1.16464 1.18735 0.83718 0.95621 1.48525 0.88343 1.43740 1.06689 1.63340 1.05269 1.20612 0.88600 0.77849 0.83514 1.90547 1.21211 1.56244 1.79008 1.21383 0.96927 1.00953 0.94594 0.86534 1.21723 0.92657 0.96805 1.02820 1.30408 1.08876 1.04379 1.17808 0.83297 1.22189 0.99168 0.89014 1.07056 1.22037 0.95179 0.99284 0.99564 1.30567 1.07431 1.18351 1.07622 0.83613 1.21585 0.95824 1.02887 0.93312 1.10564 0.77715 0.78971 0.79338 1.93580 1.61616 1.53344 1.84448 1.93544 1.58158 1.84394 1.58310 1.21718 0.92739 0.93395 0.89726 1.22623 1.02292 0.96810 0.94610 1.22432 0.99723 0.97231 0.96482 1.22264 1.01075 0.95098 0.96967 1.22641 1.01571 0.98727 0.94355 0.91323 0.90576 0.85108 0.90419 0.85520 0.89254 0.90306 0.89596 0.88981 0.90211 0.90235 0.92643 0.92368 0.92215 0.92922 0.91245 0.93205 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.21 12.62 55.50 0.70 -18.51 16 2 C 0.08 1.83 3.48 -17.47 -0.06 1.77 16 3 Si 0.83 17.48 24.02 -169.99 -4.08 13.40 16 4 H -0.27 -5.52 5.69 56.52 0.32 -5.20 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.24 -5.15 5.21 56.52 0.29 -4.85 16 7 C -0.34 -7.37 5.24 -14.94 -0.08 -7.45 16 8 H 0.10 2.31 7.41 -52.48 -0.39 1.92 16 9 N -0.47 -9.94 1.64 -106.54 -0.17 -10.11 16 10 C 0.51 11.05 5.80 -10.98 -0.06 10.99 16 11 O -0.59 -14.00 15.32 5.55 0.09 -13.91 16 12 C -0.12 -2.27 1.17 -92.30 -0.11 -2.38 16 13 H 0.12 2.28 0.66 -51.93 -0.03 2.24 16 14 C -0.10 -1.82 4.48 -26.13 -0.12 -1.94 16 15 C -0.50 -7.75 4.80 -24.87 -0.12 -7.87 16 16 H 0.15 1.93 8.14 -51.93 -0.42 1.51 16 17 C -0.14 -2.12 5.24 -25.96 -0.14 -2.26 16 18 C -0.12 -1.79 5.24 -25.96 -0.14 -1.93 16 19 C -0.53 -7.70 4.81 -24.87 -0.12 -7.82 16 20 H 0.15 1.67 8.14 -51.93 -0.42 1.25 16 21 C -0.10 -1.70 3.93 -26.13 -0.10 -1.80 16 22 S 2.35 37.08 5.40 -107.50 -0.58 36.50 16 23 O -0.93 -17.17 16.15 -57.63 -0.93 -18.11 16 24 O -0.95 -16.69 18.17 -57.63 -1.05 -17.73 16 25 C 0.13 2.50 3.28 -66.81 -0.22 2.28 16 26 C -0.12 -2.13 6.43 -25.03 -0.16 -2.29 16 27 C -0.12 -1.75 6.91 -24.69 -0.17 -1.92 16 28 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 29 C -0.14 -2.47 5.51 -25.61 -0.14 -2.62 16 30 H 0.28 5.98 8.31 -40.82 -0.34 5.64 16 31 H 0.08 1.35 7.26 -51.93 -0.38 0.97 16 32 H 0.13 2.53 5.86 -51.93 -0.30 2.23 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.13 2.28 4.53 -51.93 -0.24 2.05 16 35 H 0.09 1.42 5.72 -51.93 -0.30 1.12 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 38 H 0.09 1.65 7.19 -51.93 -0.37 1.27 16 39 H 0.08 1.65 6.96 -51.93 -0.36 1.28 16 40 H 0.08 1.45 6.84 -51.93 -0.36 1.09 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.73 3.52 -51.93 -0.18 1.55 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -27.58 338.24 -9.72 -37.29 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -6.88 Total: 13.32 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: -1.90 Total: -27.23 kcal Atomic # 7 Polarization: -29.15 SS G_CDS: 0.53 Total: -28.63 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -1.89 Total: -49.75 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -4.08 Total: 13.40 kcal Atomic # 16 Polarization: 37.08 SS G_CDS: -0.58 Total: 36.50 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.58 -9.72 -37.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889085319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.491 kcal (2) G-P(sol) polarization free energy of solvation -27.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds