Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48501 * 109.47334 * 273.32136 * 3 2 1 5 5 H 1.48500 * 109.47313 * 33.31907 * 3 2 1 6 6 H 1.48498 * 109.47258 * 153.31976 * 3 2 1 7 7 C 1.38949 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99752 * 340.56985 * 7 2 1 9 9 N 1.37091 * 120.00331 * 160.56636 * 7 2 1 10 10 C 1.34783 * 120.00414 * 293.34946 * 9 7 2 11 11 O 1.21283 * 119.99993 * 182.34653 * 10 9 7 12 12 C 1.50700 * 119.99447 * 2.34830 * 10 9 7 13 13 H 1.08997 * 108.79846 * 51.03369 * 12 10 9 14 14 C 1.52479 * 108.74217 * 292.64238 * 12 10 9 15 15 C 1.54652 * 109.30604 * 176.14863 * 14 12 10 16 16 H 1.08997 * 113.98550 * 196.07720 * 15 14 12 17 17 C 1.54875 * 105.40852 * 322.61011 * 15 14 12 18 18 C 1.52569 * 111.46225 * 81.33008 * 17 15 14 19 19 C 1.54875 * 111.47313 * 359.93380 * 18 17 15 20 20 H 1.09000 * 114.59878 * 152.61884 * 19 18 17 21 21 C 1.52479 * 108.82375 * 169.46688 * 12 10 9 22 22 S 1.84204 * 102.17511 * 28.59695 * 19 18 17 23 23 O 1.42101 * 110.07992 * 207.56753 * 22 19 18 24 24 O 1.42102 * 110.09773 * 72.43388 * 22 19 18 25 25 C 1.46507 * 120.00106 * 113.34730 * 9 7 2 26 26 C 1.54264 * 110.03033 * 63.13531 * 25 9 7 27 27 C 1.54970 * 104.15666 * 217.14032 * 26 25 9 28 28 C 1.54892 * 102.78003 * 37.88794 * 27 26 25 29 29 C 1.53881 * 110.02991 * 305.91799 * 25 9 7 30 30 H 0.97002 * 119.99769 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.50058 * 296.10241 * 14 12 10 32 32 H 1.09006 * 109.50002 * 56.19922 * 14 12 10 33 33 H 1.09003 * 109.08686 * 201.82629 * 17 15 14 34 34 H 1.08995 * 109.08889 * 320.75535 * 17 15 14 35 35 H 1.08996 * 109.04942 * 239.42879 * 18 17 15 36 36 H 1.09004 * 109.13035 * 120.48968 * 18 17 15 37 37 H 1.08999 * 109.49840 * 303.75554 * 21 12 10 38 38 H 1.09004 * 109.49623 * 63.81826 * 21 12 10 39 39 H 1.08997 * 110.01796 * 184.52442 * 25 9 7 40 40 H 1.09001 * 110.48459 * 335.78101 * 26 25 9 41 41 H 1.08995 * 110.48828 * 98.42836 * 26 25 9 42 42 H 1.09005 * 110.71854 * 279.57104 * 27 26 25 43 43 H 1.09001 * 110.92294 * 156.29643 * 27 26 25 44 44 H 1.08995 * 110.48696 * 203.40849 * 28 27 26 45 45 H 1.08999 * 110.48695 * 80.75846 * 28 27 26 46 46 H 1.09003 * 110.02949 * 238.56947 * 29 25 9 47 47 H 1.09000 * 110.02979 * 359.97438 * 29 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4255 2.0870 -1.3977 5 1 1.4825 2.6314 0.7690 6 1 3.5790 1.4209 0.6286 7 6 2.0089 -1.2033 -0.0005 8 1 1.5149 -2.1122 0.3102 9 7 3.3212 -1.2371 -0.3956 10 6 3.6462 -0.9754 -1.6772 11 8 4.8025 -1.0469 -2.0363 12 6 2.5729 -0.5940 -2.6638 13 1 1.9804 0.2179 -2.2420 14 6 1.6659 -1.7985 -2.8910 15 6 0.5029 -1.3935 -3.8266 16 1 -0.3324 -2.0938 -3.8238 17 6 0.1321 0.0540 -3.4193 18 6 1.0748 1.0715 -4.0548 19 6 2.1469 0.3800 -4.9328 20 1 2.5294 0.9930 -5.7489 21 6 3.2355 -0.1043 -3.9468 22 16 1.2743 -1.1468 -5.4811 23 8 2.2150 -2.1799 -5.7403 24 8 0.2780 -0.8218 -6.4408 25 6 4.3705 -1.5575 0.5754 26 6 4.1774 -2.9924 1.1078 27 6 4.5753 -2.8988 2.6026 28 6 4.0161 -1.5160 3.0201 29 6 4.2684 -0.6190 1.7906 30 1 -0.4850 0.8401 0.0004 31 1 2.2388 -2.6039 -3.3504 32 1 1.2637 -2.1364 -1.9359 33 1 -0.8880 0.2645 -3.7406 34 1 0.1877 0.1444 -2.3346 35 1 1.5707 1.6378 -3.2665 36 1 0.4957 1.7573 -4.6733 37 1 3.9102 0.7201 -3.7161 38 1 3.7993 -0.9201 -4.3994 39 1 5.3514 -1.4607 0.1102 40 1 3.1360 -3.2990 1.0090 41 1 4.8321 -3.6863 0.5807 42 1 5.6591 -2.9274 2.7157 43 1 4.1070 -3.6954 3.1808 44 1 4.5532 -1.1335 3.8880 45 1 2.9487 -1.5837 3.2302 46 1 5.2002 -0.0674 1.9157 47 1 3.4385 0.0750 1.6577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889085319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = -109.838435 kcal Electronic energy + Delta-G solvation = -31108.810673 eV Core-core repulsion = 27190.286577 eV Total energy + Delta-G solvation = -3918.524096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79703 -39.81523 -38.30251 -38.17585 -37.05478 -35.98956 -33.71493 -33.02906 -32.66907 -29.55718 -28.94486 -27.37083 -26.34542 -25.40395 -22.82604 -21.74863 -21.58942 -20.87281 -20.68622 -19.49112 -19.18533 -18.45511 -17.86580 -17.19381 -16.89809 -16.60509 -16.23150 -16.18081 -15.80935 -15.52555 -15.32264 -14.72279 -14.66118 -14.48530 -14.21809 -14.05812 -13.89989 -13.60451 -13.32606 -13.20760 -13.19415 -13.14868 -13.01799 -12.96084 -12.71729 -12.51343 -12.35925 -12.09903 -11.87631 -11.84520 -11.59862 -11.51664 -11.40388 -11.35316 -11.30637 -11.13630 -10.94863 -10.59138 -10.30951 -9.21965 -8.41787 -6.27293 -0.89606 1.18104 1.32952 1.41685 1.43163 1.84458 2.20253 2.54147 2.62671 2.89426 2.91012 3.36093 3.46488 3.70361 3.78699 3.83190 3.88679 3.91481 4.03887 4.07423 4.11464 4.18895 4.28056 4.54035 4.60233 4.64145 4.73548 4.74779 4.77279 4.78011 4.81783 4.91033 4.92020 5.01977 5.05275 5.07872 5.14774 5.21365 5.23564 5.40856 5.42916 5.45330 5.49558 5.57359 5.81948 6.07260 6.50815 7.08694 7.37306 7.87509 8.67139 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.005132 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.365005 B = 5454.296078 C = 6043.700227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.075 3.925 3 Si 0.846 3.154 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.329 4.329 8 H 0.078 0.922 9 N -0.470 5.470 10 C 0.492 3.508 11 O -0.614 6.614 12 C -0.120 4.120 13 H 0.117 0.883 14 C -0.100 4.100 15 C -0.498 4.498 16 H 0.172 0.828 17 C -0.142 4.142 18 C -0.127 4.127 19 C -0.511 4.511 20 H 0.184 0.816 21 C -0.101 4.101 22 S 2.363 3.637 23 O -0.963 6.963 24 O -0.960 6.960 25 C 0.117 3.883 26 C -0.122 4.122 27 C -0.110 4.110 28 C -0.111 4.111 29 C -0.137 4.137 30 H 0.280 0.720 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 1.415 -1.294 2.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.132 4.132 3 Si 0.671 3.329 4 H -0.185 1.185 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.456 4.456 8 H 0.096 0.904 9 N -0.191 5.191 10 C 0.282 3.718 11 O -0.499 6.499 12 C -0.140 4.140 13 H 0.135 0.865 14 C -0.138 4.138 15 C -0.610 4.610 16 H 0.190 0.810 17 C -0.181 4.181 18 C -0.165 4.165 19 C -0.622 4.622 20 H 0.202 0.798 21 C -0.140 4.140 22 S 2.551 3.449 23 O -0.960 6.960 24 O -0.957 6.957 25 C 0.013 3.987 26 C -0.160 4.160 27 C -0.147 4.147 28 C -0.149 4.149 29 C -0.175 4.175 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.997 0.939 -2.351 2.721 hybrid contribution 0.353 1.409 1.001 1.764 sum 1.350 2.347 -1.350 3.026 Atomic orbital electron populations 1.69740 1.06344 1.28694 1.45200 1.25762 0.95067 0.98604 0.93753 0.87479 0.82001 0.83441 0.79938 1.18487 1.20936 1.17158 1.18408 0.83944 0.94881 1.48404 0.90404 1.43836 1.06838 1.62837 1.05556 1.21182 0.88948 0.77616 0.84083 1.90516 1.22366 1.57591 1.79439 1.21462 0.96345 1.01359 0.94878 0.86525 1.21602 0.93384 0.96285 1.02562 1.30457 1.08616 1.05176 1.16725 0.81009 1.22243 1.00959 0.89110 1.05792 1.22111 0.95290 0.99395 0.99728 1.30588 1.06143 1.17737 1.07753 0.79843 1.21568 0.96638 1.02635 0.93134 1.10064 0.77070 0.78856 0.78882 1.93541 1.62403 1.55051 1.84974 1.93524 1.58654 1.84639 1.58913 1.21920 0.91507 0.95386 0.89855 1.22573 1.01467 0.95172 0.96822 1.22408 1.00953 0.97137 0.94249 1.22236 1.00907 0.95178 0.96553 1.22641 1.01104 0.98669 0.95133 0.90949 0.91035 0.86942 0.88046 0.87801 0.90404 0.86932 0.89658 0.89870 0.91716 0.91814 0.92250 0.90572 0.90267 0.90322 0.92319 0.92401 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -39.00 12.62 21.66 0.27 -38.72 16 2 C 0.08 3.33 3.48 84.93 0.30 3.63 16 3 Si 0.85 35.39 24.02 68.60 1.65 37.04 16 4 H -0.26 -10.39 5.69 99.48 0.57 -9.82 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.25 -10.58 5.21 99.48 0.52 -10.06 16 7 C -0.33 -14.60 5.24 84.04 0.44 -14.16 16 8 H 0.08 3.79 7.41 -2.91 -0.02 3.77 16 9 N -0.47 -20.34 1.64 -609.36 -1.00 -21.34 16 10 C 0.49 21.92 5.80 87.66 0.51 22.43 16 11 O -0.61 -29.95 15.32 -3.04 -0.05 -29.99 16 12 C -0.12 -4.62 1.17 -11.89 -0.01 -4.64 16 13 H 0.12 4.51 0.66 -2.39 0.00 4.51 16 14 C -0.10 -3.60 4.48 30.98 0.14 -3.46 16 15 C -0.50 -14.72 4.80 31.80 0.15 -14.57 16 16 H 0.17 4.18 8.14 -2.39 -0.02 4.16 16 17 C -0.14 -4.17 5.24 31.09 0.16 -4.01 16 18 C -0.13 -3.38 5.24 31.09 0.16 -3.21 16 19 C -0.51 -13.58 4.81 31.80 0.15 -13.43 16 20 H 0.18 3.49 8.14 -2.39 -0.02 3.47 16 21 C -0.10 -3.44 3.93 30.98 0.12 -3.32 16 22 S 2.36 70.55 5.40 -56.49 -0.30 70.24 16 23 O -0.96 -34.81 16.15 -127.56 -2.06 -36.87 16 24 O -0.96 -31.51 18.17 -127.56 -2.32 -33.83 16 25 C 0.12 4.60 3.28 45.72 0.15 4.75 16 26 C -0.12 -4.14 6.43 31.70 0.20 -3.93 16 27 C -0.11 -2.95 6.91 31.91 0.22 -2.73 16 28 C -0.11 -3.28 6.83 31.67 0.22 -3.06 16 29 C -0.14 -4.98 5.51 31.32 0.17 -4.81 16 30 H 0.28 12.00 8.31 -92.71 -0.77 11.23 16 31 H 0.07 2.59 7.26 -2.39 -0.02 2.58 16 32 H 0.11 4.47 5.86 -2.38 -0.01 4.46 16 33 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.10 3.63 4.53 -2.39 -0.01 3.62 16 35 H 0.08 2.30 5.72 -2.39 -0.01 2.29 16 36 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.08 2.90 8.11 -2.39 -0.02 2.88 16 38 H 0.08 2.98 7.19 -2.39 -0.02 2.96 16 39 H 0.06 2.73 6.96 -2.39 -0.02 2.71 16 40 H 0.06 2.35 6.84 -2.39 -0.02 2.34 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 46 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.06 2.61 3.52 -2.39 -0.01 2.61 16 Total: -1.00 -59.54 338.24 -0.05 -59.59 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: 0.67 Total: 38.40 kcal Atomic # 6 Polarization: -47.61 SS G_CDS: 3.09 Total: -44.52 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.72 Total: -60.06 kcal Atomic # 8 Polarization: -96.27 SS G_CDS: -4.43 Total: -100.69 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 1.65 Total: 37.04 kcal Atomic # 16 Polarization: 70.55 SS G_CDS: -0.30 Total: 70.24 kcal Total: -59.54 -0.05 -59.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889085319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.249 kcal (2) G-P(sol) polarization free energy of solvation -59.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds