Wall clock time and date at job start Sat Apr 11 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47537 * 270.00529 * 3 2 1 5 5 H 1.48504 * 109.47223 * 30.00128 * 3 2 1 6 6 H 1.48502 * 109.47264 * 149.99816 * 3 2 1 7 7 C 1.37875 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99858 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99719 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47039 * 179.97438 * 9 7 2 11 11 N 1.39910 * 125.81069 * 270.15738 * 10 9 7 12 12 C 1.30454 * 109.22080 * 180.29383 * 11 10 9 13 13 C 1.41094 * 108.30186 * 359.74196 * 12 11 10 14 14 C 1.47176 * 126.48098 * 180.02562 * 13 12 11 15 15 O 1.21633 * 119.99851 * 180.02562 * 14 13 12 16 16 N 1.34773 * 120.00002 * 359.97438 * 14 13 12 17 17 C 1.47072 * 136.05718 * 359.63461 * 16 14 13 18 18 C 1.53756 * 87.88896 * 152.96103 * 17 16 14 19 19 C 1.47065 * 136.05885 * 179.97438 * 16 14 13 20 20 H 1.08998 * 113.46553 * 92.30847 * 19 16 14 21 21 C 1.53001 * 113.46650 * 321.87038 * 19 16 14 22 22 O 1.42900 * 109.46975 * 294.99464 * 21 19 16 23 23 C 1.35173 * 125.80435 * 89.99581 * 10 9 7 24 24 C 1.47746 * 126.47488 * 359.97438 * 23 10 9 25 25 C 1.39607 * 120.15143 * 134.41074 * 24 23 10 26 26 C 1.37952 * 119.85048 * 179.69490 * 25 24 23 27 27 C 1.38364 * 120.14432 * 0.58101 * 26 25 24 28 28 C 1.38362 * 120.30013 * 359.71393 * 27 26 25 29 29 C 1.37947 * 120.15503 * 359.97438 * 28 27 26 30 30 H 0.97001 * 119.99965 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47509 * 60.00050 * 9 7 2 32 32 H 1.08999 * 109.46844 * 299.99371 * 9 7 2 33 33 H 1.07995 * 125.85519 * 179.74397 * 12 11 10 34 34 H 1.09001 * 113.46249 * 267.69112 * 17 16 14 35 35 H 1.08997 * 113.46804 * 38.13038 * 17 16 14 36 36 H 1.09001 * 114.39178 * 272.67236 * 18 17 16 37 37 H 1.08994 * 114.26540 * 139.79106 * 18 17 16 38 38 H 1.08995 * 109.47261 * 54.99542 * 21 19 16 39 39 H 1.09002 * 109.47053 * 175.00271 * 21 19 16 40 40 H 0.96704 * 113.99804 * 180.02562 * 22 21 19 41 41 H 1.08004 * 120.07745 * 359.97438 * 25 24 23 42 42 H 1.07998 * 119.92809 * 180.27792 * 26 25 24 43 43 H 1.08002 * 119.84988 * 179.74003 * 27 26 25 44 44 H 1.08006 * 119.91964 * 179.97438 * 28 27 26 45 45 H 1.07994 * 120.07944 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6127 -0.0027 11 7 2.7375 -4.2318 -1.1379 12 6 3.5443 -5.1872 -0.7663 13 6 3.5700 -5.2220 0.6440 14 6 4.3501 -6.1464 1.4825 15 8 4.2831 -6.0717 2.6946 16 7 5.1380 -7.0763 0.9071 17 6 5.4718 -7.4775 -0.4679 18 6 6.8215 -7.9828 0.0679 19 6 6.0375 -8.1402 1.3779 20 1 5.5487 -9.1094 1.4774 21 6 6.8424 -7.7523 2.6199 22 8 7.7332 -6.6831 2.2954 23 6 2.7171 -4.2147 1.0930 24 6 2.4253 -3.8737 2.5007 25 6 2.1540 -4.8840 3.4252 26 6 1.8886 -4.5590 4.7393 27 6 1.8791 -3.2345 5.1393 28 6 2.1412 -2.2279 4.2269 29 6 2.4144 -2.5392 2.9110 30 1 -0.4850 0.8401 0.0004 31 1 0.6248 -2.5563 -0.8919 32 1 0.6242 -2.5574 0.8881 33 1 4.0978 -5.8398 -1.4251 34 1 4.8337 -8.2718 -0.8552 35 1 5.5633 -6.6366 -1.1553 36 1 7.6039 -7.2247 0.1038 37 1 7.1534 -8.9240 -0.3704 38 1 6.1617 -7.4315 3.4084 39 1 7.4172 -8.6123 2.9636 40 1 8.2769 -6.3852 3.0376 41 1 2.1562 -5.9180 3.1132 42 1 1.6829 -5.3399 5.4565 43 1 1.6666 -2.9852 6.1684 44 1 2.1318 -1.1960 4.5456 45 1 2.6192 -1.7526 2.2000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889150178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:07 Heat of formation + Delta-G solvation = 60.794885 kcal Electronic energy + Delta-G solvation = -30071.652651 eV Core-core repulsion = 26057.376571 eV Total energy + Delta-G solvation = -4014.276080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.92410 -40.04071 -38.23775 -37.32052 -36.18965 -33.92356 -32.15622 -31.40894 -30.38669 -29.94408 -28.60106 -28.13770 -27.20502 -23.89055 -23.32835 -22.68199 -22.11066 -22.04183 -20.53751 -19.34837 -18.63472 -17.58029 -16.91517 -16.78156 -16.27919 -15.89135 -15.65101 -15.30651 -14.76107 -14.63382 -14.45987 -14.08229 -13.92311 -13.49746 -13.42269 -12.96292 -12.85660 -12.75564 -12.65169 -12.47441 -12.27980 -12.18848 -12.03928 -11.70041 -11.51933 -11.13735 -10.93966 -10.83257 -10.52026 -10.40255 -10.36064 -10.27770 -10.08403 -9.93868 -9.23399 -9.03832 -8.72349 -8.54322 -8.30373 -8.15995 -7.69235 -6.34954 -4.43023 1.42578 2.02007 2.44258 2.82635 2.91444 3.17169 3.24030 3.26465 3.39171 3.92790 4.06516 4.21995 4.36185 4.39405 4.75213 4.91532 4.96396 4.99842 5.02134 5.19403 5.28051 5.32947 5.38514 5.42618 5.47542 5.52952 5.62243 5.67291 5.69521 5.83532 5.95706 6.02588 6.14916 6.22839 6.38469 6.44933 6.64547 6.75099 6.90659 6.94684 7.05882 7.15106 7.16900 7.49746 7.54701 7.56294 7.74963 7.75983 7.99625 8.35125 8.61513 8.68244 9.22909 10.72803 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.003907 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.231406 B = 7164.897376 C = 8315.453424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.251 3.749 10 N -0.306 5.306 11 N -0.292 5.292 12 C 0.054 3.946 13 C -0.309 4.309 14 C 0.632 3.368 15 O -0.545 6.545 16 N -0.637 5.637 17 C 0.093 3.907 18 C -0.144 4.144 19 C 0.133 3.867 20 H 0.099 0.901 21 C 0.068 3.932 22 O -0.563 6.563 23 C 0.198 3.802 24 C -0.045 4.045 25 C -0.043 4.043 26 C -0.141 4.141 27 C -0.110 4.110 28 C -0.134 4.134 29 C -0.079 4.079 30 H 0.270 0.730 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.180 0.820 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.377 0.623 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.307 -15.539 5.158 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.133 4.133 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.579 4.579 8 H 0.085 0.915 9 C 0.134 3.866 10 N -0.083 5.083 11 N -0.112 5.112 12 C -0.132 4.132 13 C -0.325 4.325 14 C 0.426 3.574 15 O -0.423 6.423 16 N -0.373 5.373 17 C -0.030 4.030 18 C -0.181 4.181 19 C 0.029 3.971 20 H 0.117 0.883 21 C -0.010 4.010 22 O -0.368 6.368 23 C 0.062 3.938 24 C -0.047 4.047 25 C -0.062 4.062 26 C -0.159 4.159 27 C -0.128 4.128 28 C -0.152 4.152 29 C -0.098 4.098 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.196 0.804 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.223 0.777 41 H 0.140 0.860 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.009 -14.513 4.241 17.600 hybrid contribution 0.942 0.516 1.022 1.483 sum 9.952 -13.996 5.263 17.962 Atomic orbital electron populations 1.69918 1.06053 1.27900 1.48214 1.24903 0.94946 0.99376 0.94124 0.86388 0.79819 0.82161 0.78623 1.20180 1.20721 1.19452 1.21204 0.93691 0.89320 1.53720 0.91533 1.19917 0.86149 0.80275 1.00303 1.49628 1.31952 1.25293 1.01389 1.77112 1.14524 1.10356 1.09228 1.23945 0.98320 0.97344 0.93564 1.19749 1.12546 1.06899 0.93285 1.16712 0.76176 0.78166 0.86381 1.90734 1.65670 1.72088 1.13855 1.49298 1.46082 1.33062 1.08900 1.23091 0.94300 0.99328 0.86301 1.23444 0.97031 1.02642 0.95028 1.22687 0.88615 0.90971 0.94827 0.88321 1.22228 0.92227 0.89443 0.97106 1.86466 1.56102 1.54130 1.40129 1.19762 0.93681 0.91949 0.88447 1.17929 1.03719 0.93907 0.89125 1.21048 0.94367 0.98448 0.92371 1.20870 1.03187 0.96114 0.95742 1.21172 0.99495 0.93112 0.99059 1.20998 1.01765 0.99113 0.93355 1.21925 0.95053 0.96064 0.96714 0.92049 0.92473 0.92428 0.80374 0.89931 0.90029 0.87477 0.89943 0.91643 0.93248 0.77666 0.86016 0.86562 0.86711 0.86175 0.83213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.22 13.29 55.43 0.74 -23.48 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.35 7.23 -34.44 -0.25 -14.60 16 8 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 9 C 0.25 6.34 5.42 -5.19 -0.03 6.31 16 10 N -0.31 -7.18 3.59 -58.19 -0.21 -7.39 16 11 N -0.29 -6.46 12.48 30.82 0.38 -6.07 16 12 C 0.05 1.00 11.12 -17.05 -0.19 0.81 16 13 C -0.31 -6.13 6.13 -104.74 -0.64 -6.77 16 14 C 0.63 11.48 7.85 -12.63 -0.10 11.38 16 15 O -0.54 -10.85 12.42 5.25 0.07 -10.78 16 16 N -0.64 -8.87 3.56 -178.65 -0.64 -9.50 16 17 C 0.09 0.93 7.14 -8.37 -0.06 0.87 16 18 C -0.14 -1.25 7.86 -26.09 -0.20 -1.45 16 19 C 0.13 1.39 4.57 -72.41 -0.33 1.05 16 20 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 21 C 0.07 0.73 7.05 37.16 0.26 0.99 16 22 O -0.56 -6.54 12.11 -35.23 -0.43 -6.97 16 23 C 0.20 4.34 6.50 -82.07 -0.53 3.81 16 24 C -0.04 -0.94 5.07 -104.99 -0.53 -1.47 16 25 C -0.04 -0.81 7.54 -39.18 -0.30 -1.11 16 26 C -0.14 -2.31 10.03 -39.64 -0.40 -2.70 16 27 C -0.11 -1.75 10.04 -39.49 -0.40 -2.14 16 28 C -0.13 -2.40 10.03 -39.64 -0.40 -2.80 16 29 C -0.08 -1.65 8.65 -39.17 -0.34 -1.98 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.06 1.50 7.32 -51.93 -0.38 1.11 16 33 H 0.18 2.53 5.18 -52.49 -0.27 2.26 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.83 6.11 -51.93 -0.32 0.51 16 36 H 0.11 1.12 6.92 -51.93 -0.36 0.76 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.86 7.04 -51.93 -0.37 0.49 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.38 2.92 9.12 45.56 0.42 3.33 16 41 H 0.12 2.27 6.81 -52.48 -0.36 1.91 16 42 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 44 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 45 H 0.15 3.44 5.56 -52.49 -0.29 3.15 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -32.65 371.06 -8.90 -41.55 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -4.86 Total: 9.52 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -4.53 Total: -8.02 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.28 Total: -46.44 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.36 Total: -17.75 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.65 -8.90 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889150178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.341 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds