Wall clock time and date at job start Sat Apr 11 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47537 * 270.00529 * 3 2 1 5 5 H 1.48504 * 109.47223 * 30.00128 * 3 2 1 6 6 H 1.48502 * 109.47264 * 149.99816 * 3 2 1 7 7 C 1.37875 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99858 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99719 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47039 * 179.97438 * 9 7 2 11 11 N 1.39910 * 125.81069 * 270.15738 * 10 9 7 12 12 C 1.30454 * 109.22080 * 180.29383 * 11 10 9 13 13 C 1.41094 * 108.30186 * 359.74196 * 12 11 10 14 14 C 1.47176 * 126.48098 * 180.02562 * 13 12 11 15 15 O 1.21633 * 119.99851 * 180.02562 * 14 13 12 16 16 N 1.34773 * 120.00002 * 359.97438 * 14 13 12 17 17 C 1.47072 * 136.05718 * 359.63461 * 16 14 13 18 18 C 1.53756 * 87.88896 * 152.96103 * 17 16 14 19 19 C 1.47065 * 136.05885 * 179.97438 * 16 14 13 20 20 H 1.08998 * 113.46553 * 92.30847 * 19 16 14 21 21 C 1.53001 * 113.46650 * 321.87038 * 19 16 14 22 22 O 1.42900 * 109.46975 * 294.99464 * 21 19 16 23 23 C 1.35173 * 125.80435 * 89.99581 * 10 9 7 24 24 C 1.47746 * 126.47488 * 359.97438 * 23 10 9 25 25 C 1.39607 * 120.15143 * 134.41074 * 24 23 10 26 26 C 1.37952 * 119.85048 * 179.69490 * 25 24 23 27 27 C 1.38364 * 120.14432 * 0.58101 * 26 25 24 28 28 C 1.38362 * 120.30013 * 359.71393 * 27 26 25 29 29 C 1.37947 * 120.15503 * 359.97438 * 28 27 26 30 30 H 0.97001 * 119.99965 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47509 * 60.00050 * 9 7 2 32 32 H 1.08999 * 109.46844 * 299.99371 * 9 7 2 33 33 H 1.07995 * 125.85519 * 179.74397 * 12 11 10 34 34 H 1.09001 * 113.46249 * 267.69112 * 17 16 14 35 35 H 1.08997 * 113.46804 * 38.13038 * 17 16 14 36 36 H 1.09001 * 114.39178 * 272.67236 * 18 17 16 37 37 H 1.08994 * 114.26540 * 139.79106 * 18 17 16 38 38 H 1.08995 * 109.47261 * 54.99542 * 21 19 16 39 39 H 1.09002 * 109.47053 * 175.00271 * 21 19 16 40 40 H 0.96704 * 113.99804 * 180.02562 * 22 21 19 41 41 H 1.08004 * 120.07745 * 359.97438 * 25 24 23 42 42 H 1.07998 * 119.92809 * 180.27792 * 26 25 24 43 43 H 1.08002 * 119.84988 * 179.74003 * 27 26 25 44 44 H 1.08006 * 119.91964 * 179.97438 * 28 27 26 45 45 H 1.07994 * 120.07944 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6127 -0.0027 11 7 2.7375 -4.2318 -1.1379 12 6 3.5443 -5.1872 -0.7663 13 6 3.5700 -5.2220 0.6440 14 6 4.3501 -6.1464 1.4825 15 8 4.2831 -6.0717 2.6946 16 7 5.1380 -7.0763 0.9071 17 6 5.4718 -7.4775 -0.4679 18 6 6.8215 -7.9828 0.0679 19 6 6.0375 -8.1402 1.3779 20 1 5.5487 -9.1094 1.4774 21 6 6.8424 -7.7523 2.6199 22 8 7.7332 -6.6831 2.2954 23 6 2.7171 -4.2147 1.0930 24 6 2.4253 -3.8737 2.5007 25 6 2.1540 -4.8840 3.4252 26 6 1.8886 -4.5590 4.7393 27 6 1.8791 -3.2345 5.1393 28 6 2.1412 -2.2279 4.2269 29 6 2.4144 -2.5392 2.9110 30 1 -0.4850 0.8401 0.0004 31 1 0.6248 -2.5563 -0.8919 32 1 0.6242 -2.5574 0.8881 33 1 4.0978 -5.8398 -1.4251 34 1 4.8337 -8.2718 -0.8552 35 1 5.5633 -6.6366 -1.1553 36 1 7.6039 -7.2247 0.1038 37 1 7.1534 -8.9240 -0.3704 38 1 6.1617 -7.4315 3.4084 39 1 7.4172 -8.6123 2.9636 40 1 8.2769 -6.3852 3.0376 41 1 2.1562 -5.9180 3.1132 42 1 1.6829 -5.3399 5.4565 43 1 1.6666 -2.9852 6.1684 44 1 2.1318 -1.1960 4.5456 45 1 2.6192 -1.7526 2.2000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889150178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:06 Heat of formation + Delta-G solvation = 38.115559 kcal Electronic energy + Delta-G solvation = -30072.636100 eV Core-core repulsion = 26057.376571 eV Total energy + Delta-G solvation = -4015.259530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.41859 -41.11460 -39.66889 -38.57814 -37.06644 -35.86039 -33.89305 -32.98022 -31.77564 -31.21742 -29.68554 -29.40105 -28.95791 -25.63911 -24.39818 -24.03678 -23.50132 -23.34318 -21.87206 -20.81254 -19.82625 -18.89471 -18.68190 -18.09642 -17.51872 -17.01567 -16.81741 -16.77206 -16.37253 -16.15578 -15.72292 -15.52523 -15.26090 -15.00721 -14.81441 -14.38453 -14.20346 -14.08138 -13.84948 -13.78098 -13.64322 -13.49206 -13.28972 -13.06579 -12.97356 -12.77278 -12.43736 -12.32958 -12.11190 -11.93506 -11.89898 -11.76192 -11.22045 -11.06353 -10.78320 -10.68684 -10.48245 -9.87477 -9.73709 -9.56379 -9.17685 -8.39464 -6.55273 -0.06769 0.58226 0.96326 1.27405 1.34464 1.35602 1.44775 1.55661 2.01650 2.29748 2.53642 2.91313 2.95533 3.31480 3.48380 3.57422 3.62879 3.97745 4.05299 4.13058 4.15136 4.16645 4.25167 4.34174 4.42734 4.49306 4.51906 4.60184 4.61260 4.71614 4.75407 4.78665 4.86741 4.91793 5.04752 5.07640 5.19740 5.23081 5.44422 5.50327 5.54211 5.61817 5.63825 5.67988 5.71207 5.95890 6.11618 6.50873 6.72993 6.84002 6.89449 7.14095 7.37154 8.68700 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.003907 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.231406 B = 7164.897376 C = 8315.453424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.031 3.969 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.050 0.950 9 C 0.272 3.728 10 N -0.331 5.331 11 N -0.328 5.328 12 C 0.072 3.928 13 C -0.313 4.313 14 C 0.624 3.376 15 O -0.572 6.572 16 N -0.644 5.644 17 C 0.085 3.915 18 C -0.124 4.124 19 C 0.123 3.877 20 H 0.129 0.871 21 C 0.067 3.933 22 O -0.584 6.584 23 C 0.179 3.821 24 C -0.070 4.070 25 C -0.050 4.050 26 C -0.135 4.135 27 C -0.097 4.097 28 C -0.140 4.140 29 C -0.107 4.107 30 H 0.275 0.725 31 H 0.031 0.969 32 H 0.041 0.959 33 H 0.223 0.777 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.035 0.965 39 H 0.085 0.915 40 H 0.390 0.610 41 H 0.118 0.882 42 H 0.153 0.847 43 H 0.159 0.841 44 H 0.137 0.863 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.942 -17.486 6.202 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.068 0.932 9 C 0.154 3.846 10 N -0.108 5.108 11 N -0.148 5.148 12 C -0.113 4.113 13 C -0.329 4.329 14 C 0.416 3.584 15 O -0.453 6.453 16 N -0.379 5.379 17 C -0.037 4.037 18 C -0.161 4.161 19 C 0.021 3.979 20 H 0.146 0.854 21 C -0.011 4.011 22 O -0.391 6.391 23 C 0.044 3.956 24 C -0.072 4.072 25 C -0.069 4.069 26 C -0.152 4.152 27 C -0.115 4.115 28 C -0.158 4.158 29 C -0.126 4.126 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.239 0.761 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.053 0.947 39 H 0.103 0.897 40 H 0.239 0.761 41 H 0.136 0.864 42 H 0.170 0.830 43 H 0.176 0.824 44 H 0.155 0.845 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.682 -16.502 5.267 20.351 hybrid contribution 0.535 0.954 0.746 1.324 sum 11.217 -15.549 6.013 20.093 Atomic orbital electron populations 1.70002 1.07291 1.28977 1.48709 1.25655 0.95707 1.02368 0.93401 0.85437 0.78593 0.78291 0.78758 1.19717 1.19347 1.19458 1.21213 0.92848 0.90413 1.54056 0.93218 1.19362 0.86185 0.81020 0.98056 1.49373 1.33087 1.25927 1.02402 1.77036 1.16282 1.11971 1.09544 1.24621 0.96690 0.96199 0.93773 1.20174 1.11923 1.06647 0.94112 1.16509 0.76887 0.79057 0.85901 1.90696 1.66804 1.73093 1.14688 1.49443 1.44594 1.32434 1.11397 1.23477 0.95692 1.00064 0.84479 1.23324 0.95494 1.03829 0.93487 1.23170 0.88177 0.90831 0.95680 0.85409 1.22287 0.92098 0.90244 0.96483 1.86429 1.56469 1.54848 1.41394 1.20277 0.94108 0.92454 0.88776 1.18113 1.05304 0.94536 0.89209 1.21123 0.94781 0.97709 0.93296 1.21317 1.01283 0.97503 0.95145 1.21607 0.97185 0.92185 1.00543 1.21270 1.01252 1.00824 0.92442 1.21772 0.97628 0.95411 0.97790 0.91589 0.95082 0.94104 0.76096 0.86798 0.90384 0.89336 0.85894 0.94702 0.89750 0.76117 0.86396 0.82968 0.82362 0.84475 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.68 13.29 21.45 0.28 -51.39 16 2 C 0.03 1.68 5.46 84.65 0.46 2.14 16 3 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -30.78 7.23 25.60 0.19 -30.59 16 8 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 9 C 0.27 14.85 5.42 85.63 0.46 15.31 16 10 N -0.33 -16.57 3.59 -338.01 -1.21 -17.78 16 11 N -0.33 -15.14 12.48 -56.41 -0.70 -15.84 16 12 C 0.07 2.71 11.12 85.60 0.95 3.66 16 13 C -0.31 -12.75 6.13 -19.94 -0.12 -12.87 16 14 C 0.62 22.73 7.85 86.59 0.68 23.41 16 15 O -0.57 -23.11 12.42 -4.14 -0.05 -23.16 16 16 N -0.64 -16.82 3.56 -837.37 -2.98 -19.81 16 17 C 0.08 1.42 7.14 83.27 0.59 2.02 16 18 C -0.12 -1.68 7.86 31.01 0.24 -1.44 16 19 C 0.12 2.21 4.57 41.79 0.19 2.40 16 20 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 21 C 0.07 1.30 7.05 71.98 0.51 1.80 16 22 O -0.58 -12.86 12.11 -148.98 -1.80 -14.67 16 23 C 0.18 8.31 6.50 41.43 0.27 8.58 16 24 C -0.07 -3.07 5.07 -20.10 -0.10 -3.17 16 25 C -0.05 -1.90 7.54 22.53 0.17 -1.73 16 26 C -0.13 -4.17 10.03 22.23 0.22 -3.95 16 27 C -0.10 -2.87 10.04 22.33 0.22 -2.65 16 28 C -0.14 -5.00 10.03 22.23 0.22 -4.77 16 29 C -0.11 -4.72 8.65 22.53 0.19 -4.52 16 30 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.04 2.32 7.32 -2.39 -0.02 2.30 16 33 H 0.22 5.91 5.18 -2.91 -0.02 5.90 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.37 6.11 -2.39 -0.01 1.35 16 36 H 0.09 1.61 6.92 -2.39 -0.02 1.59 16 37 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.03 0.89 7.04 -2.39 -0.02 0.88 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.39 5.73 9.12 -74.05 -0.68 5.05 16 41 H 0.12 4.51 6.81 -2.91 -0.02 4.49 16 42 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 43 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 45 H 0.12 5.88 5.56 -2.91 -0.02 5.86 16 Total: -1.00 -76.74 371.06 1.28 -75.45 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.37 Total: 28.38 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 5.36 Total: -6.37 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -4.62 Total: -104.83 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -1.86 Total: -37.83 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -76.74 1.28 -75.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889150178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.570 kcal (2) G-P(sol) polarization free energy of solvation -76.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds