Wall clock time and date at job start Sat Apr 11 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00219 * 2 1 4 4 H 1.48493 * 109.47021 * 275.37558 * 3 2 1 5 5 H 1.48499 * 109.46707 * 35.37360 * 3 2 1 6 6 H 1.48497 * 109.47135 * 155.37270 * 3 2 1 7 7 C 1.38819 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99644 * 35.24133 * 7 2 1 9 9 N 1.36936 * 119.99756 * 215.23640 * 7 2 1 10 10 C 1.46959 * 120.59342 * 207.36131 * 9 7 2 11 11 C 1.53372 * 108.63851 * 235.25204 * 10 9 7 12 12 N 1.46964 * 108.63336 * 310.57794 * 11 10 9 13 13 C 1.34767 * 120.59195 * 235.20158 * 12 11 10 14 14 O 1.21287 * 120.00468 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00010 * 180.02562 * 13 12 11 16 16 H 1.08998 * 115.58164 * 325.78610 * 15 13 12 17 17 C 1.53140 * 117.51506 * 111.56703 * 15 13 12 18 18 C 1.52333 * 117.51746 * 179.97438 * 15 13 12 19 19 C 1.50784 * 121.76707 * 3.63813 * 18 15 13 20 20 O 1.21287 * 126.61607 * 323.54811 * 19 18 15 21 21 N 1.34601 * 106.76571 * 143.79746 * 19 18 15 22 22 C 1.39613 * 112.21497 * 359.97438 * 21 19 18 23 23 C 1.39329 * 130.80870 * 180.02562 * 22 21 19 24 24 C 1.37933 * 120.18639 * 179.97438 * 23 22 21 25 25 C 1.38305 * 120.34836 * 359.97438 * 24 23 22 26 26 C 1.38371 * 119.83515 * 0.04807 * 25 24 23 27 27 C 1.37684 * 119.98579 * 359.93285 * 26 25 24 28 28 C 1.46968 * 118.81143 * 55.47908 * 12 11 10 29 29 C 1.46969 * 120.59348 * 27.39281 * 9 7 2 30 30 H 0.97003 * 119.99801 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.61018 * 115.50514 * 10 9 7 32 32 H 1.09007 * 109.75331 * 355.07876 * 10 9 7 33 33 H 1.08998 * 109.61148 * 190.82733 * 11 10 9 34 34 H 1.09004 * 109.74789 * 70.40739 * 11 10 9 35 35 H 1.08995 * 117.52101 * 0.02562 * 17 15 13 36 36 H 1.09002 * 117.51326 * 214.87628 * 17 15 13 37 37 H 0.96997 * 123.89173 * 179.97438 * 21 19 18 38 38 H 1.07997 * 119.90796 * 359.96988 * 23 22 21 39 39 H 1.07997 * 119.82789 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.08412 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.01256 * 179.97438 * 26 25 24 42 42 H 1.08997 * 109.61080 * 64.26423 * 28 12 11 43 43 H 1.09001 * 109.60798 * 184.77795 * 28 12 11 44 44 H 1.08998 * 109.60382 * 244.48787 * 29 9 7 45 45 H 1.08993 * 109.60940 * 4.82835 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3842 2.1119 -1.3939 5 1 1.5091 2.6172 0.8105 6 1 3.5999 1.4100 0.5834 7 6 2.0102 -1.2022 0.0005 8 1 1.6186 -2.0520 -0.5388 9 7 3.1914 -1.3106 0.6848 10 6 4.2162 -2.2744 0.2600 11 6 4.5602 -3.1801 1.4490 12 7 4.8255 -2.3350 2.6217 13 6 5.9876 -2.4423 3.2957 14 8 6.8256 -3.2420 2.9362 15 6 6.2454 -1.5694 4.4968 16 1 5.8222 -0.5661 4.4490 17 6 6.2992 -2.2500 5.8676 18 6 7.5773 -1.7382 5.2166 19 6 8.6405 -2.6791 4.7087 20 8 8.4612 -3.7580 4.1845 21 7 9.8271 -2.0930 4.9543 22 6 9.6839 -0.8511 5.5758 23 6 10.6388 0.0719 5.9969 24 6 10.2470 1.2508 6.5962 25 6 8.9048 1.5270 6.7837 26 6 7.9499 0.6155 6.3689 27 6 8.3372 -0.5622 5.7699 28 6 3.7983 -1.3751 3.0500 29 6 3.4567 -0.4655 1.8576 30 1 -0.4850 0.8401 0.0004 31 1 5.1095 -1.7400 -0.0632 32 1 3.8344 -2.8796 -0.5623 33 1 5.4463 -3.7701 1.2152 34 1 3.7229 -3.8455 1.6594 35 1 6.1485 -3.3290 5.9004 36 1 5.9114 -1.6942 6.7213 37 1 10.6830 -2.4880 4.7258 38 1 11.6888 -0.1363 5.8537 39 1 10.9921 1.9624 6.9200 40 1 8.6027 2.4516 7.2531 41 1 6.9011 0.8280 6.5142 42 1 2.9061 -1.9128 3.3707 43 1 4.1813 -0.7726 3.8736 44 1 4.2959 0.1977 1.6482 45 1 2.5715 0.1267 2.0895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933236025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:53 Heat of formation + Delta-G solvation = 54.115434 kcal Electronic energy + Delta-G solvation = -29947.942399 eV Core-core repulsion = 25933.376676 eV Total energy + Delta-G solvation = -4014.565723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93223 -39.72539 -38.44934 -37.21102 -36.12265 -35.57697 -33.89201 -31.66005 -31.14192 -30.64207 -29.45727 -27.39927 -26.11343 -24.64676 -23.21426 -22.90250 -22.82811 -21.73822 -20.85721 -19.92030 -18.55401 -17.95518 -17.73237 -16.67700 -16.29336 -15.98401 -15.77173 -15.39186 -15.23413 -14.65815 -14.62169 -14.35288 -14.27247 -14.16753 -14.05897 -13.64986 -13.27750 -12.98746 -12.86381 -12.57626 -12.36897 -12.29241 -12.15240 -11.94153 -11.55008 -11.28277 -11.06735 -10.86876 -10.81691 -10.75607 -10.47828 -10.36309 -10.20753 -10.14672 -9.48940 -9.21831 -9.06523 -8.71618 -8.20129 -8.19502 -7.01277 -6.10621 -3.32388 0.83662 1.00542 2.22737 2.76040 2.85139 3.19992 3.33145 3.45770 3.49399 3.51179 3.83206 3.99024 4.02944 4.19733 4.49705 4.56633 4.63041 4.71932 4.79700 4.84387 4.99620 5.13606 5.17522 5.24308 5.28679 5.36626 5.54860 5.61032 5.63201 5.65546 5.83955 5.84631 5.91938 6.07559 6.08891 6.13456 6.17801 6.27539 6.37144 6.49732 6.58042 6.66249 6.75331 6.78786 6.96475 7.78383 7.86938 8.01444 8.23507 8.54157 8.86630 9.64605 10.04811 11.03979 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014862 B = 0.003271 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.549380 B = 8559.169708 C = 9729.031082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.038 3.962 3 Si 0.836 3.164 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.273 4.273 8 H 0.083 0.917 9 N -0.600 5.600 10 C 0.133 3.867 11 C 0.098 3.902 12 N -0.595 5.595 13 C 0.524 3.476 14 O -0.514 6.514 15 C -0.134 4.134 16 H 0.138 0.862 17 C -0.097 4.097 18 C -0.119 4.119 19 C 0.554 3.446 20 O -0.437 6.437 21 N -0.668 5.668 22 C 0.157 3.843 23 C -0.146 4.146 24 C -0.084 4.084 25 C -0.145 4.145 26 C -0.063 4.063 27 C -0.108 4.108 28 C 0.086 3.914 29 C 0.131 3.869 30 H 0.263 0.737 31 H 0.025 0.975 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.412 0.588 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.033 0.967 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.488 1.863 17.306 25.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.163 4.163 3 Si 0.663 3.337 4 H -0.220 1.220 5 H -0.220 1.220 6 H -0.180 1.180 7 C -0.400 4.400 8 H 0.100 0.900 9 N -0.323 5.323 10 C 0.006 3.994 11 C -0.025 4.025 12 N -0.328 5.328 13 C 0.310 3.690 14 O -0.390 6.390 15 C -0.155 4.155 16 H 0.156 0.844 17 C -0.135 4.135 18 C -0.123 4.123 19 C 0.339 3.661 20 O -0.305 6.305 21 N -0.313 5.313 22 C 0.059 3.941 23 C -0.168 4.168 24 C -0.102 4.102 25 C -0.164 4.164 26 C -0.081 4.081 27 C -0.111 4.111 28 C -0.039 4.039 29 C 0.004 3.996 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.251 0.749 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.051 0.949 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.503 0.791 16.724 24.953 hybrid contribution 0.788 1.202 -0.311 1.470 sum 19.291 1.993 16.413 25.406 Atomic orbital electron populations 1.70084 1.06164 1.26893 1.49085 1.25240 0.94838 0.97438 0.98778 0.87613 0.82071 0.85901 0.78117 1.22003 1.22016 1.18048 1.18794 0.94760 0.96541 1.29943 0.89979 1.44275 1.16563 1.42940 1.28558 1.21343 0.91853 0.91827 0.94330 1.22185 1.01103 0.93368 0.85860 1.47925 1.16235 1.39184 1.29466 1.19522 0.82270 0.83561 0.83661 1.90898 1.43975 1.36846 1.67260 1.22251 0.96942 1.02412 0.93904 0.84446 1.22952 0.93899 1.02367 0.94280 1.20058 0.89712 0.96708 1.05826 1.19170 0.82843 0.85885 0.78222 1.90915 1.82436 1.19374 1.37724 1.43691 1.10130 1.18295 1.59154 1.18206 0.94622 0.86401 0.94837 1.20346 0.98246 0.94218 1.03950 1.20875 0.96357 0.95728 0.97282 1.21027 0.92691 0.99907 1.02747 1.20285 1.00219 0.91481 0.96163 1.18991 0.92271 0.95636 1.04208 1.22618 0.90987 0.91912 0.98384 1.21823 0.99399 0.92192 0.86207 0.92709 0.95685 0.90728 0.89709 0.91514 0.86742 0.86203 0.74944 0.85671 0.85273 0.85272 0.85378 0.90826 0.90766 0.94948 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.87 13.97 55.49 0.78 -25.09 16 2 C 0.04 1.06 4.85 -17.43 -0.08 0.97 16 3 Si 0.84 20.47 26.43 -169.99 -4.49 15.97 16 4 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.26 -5.93 4.82 56.52 0.27 -5.65 16 7 C -0.27 -7.34 9.86 -15.06 -0.15 -7.49 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 9 N -0.60 -13.80 2.70 -171.77 -0.46 -14.27 16 10 C 0.13 2.66 6.67 -3.60 -0.02 2.63 16 11 C 0.10 1.78 6.59 -3.60 -0.02 1.75 16 12 N -0.59 -10.31 2.94 -172.21 -0.51 -10.82 16 13 C 0.52 8.96 7.48 -10.99 -0.08 8.87 16 14 O -0.51 -10.48 11.78 -19.62 -0.23 -10.72 16 15 C -0.13 -1.73 4.98 -92.04 -0.46 -2.19 16 16 H 0.14 1.51 6.60 -51.93 -0.34 1.16 16 17 C -0.10 -1.02 9.99 -27.02 -0.27 -1.29 16 18 C -0.12 -1.49 2.41 -157.55 -0.38 -1.87 16 19 C 0.55 8.22 7.76 -11.02 -0.09 8.14 16 20 O -0.44 -8.18 14.49 -19.62 -0.28 -8.46 16 21 N -0.67 -7.64 5.90 -9.79 -0.06 -7.69 16 22 C 0.16 1.64 7.12 -83.59 -0.59 1.04 16 23 C -0.15 -1.17 10.07 -39.29 -0.40 -1.56 16 24 C -0.08 -0.58 10.02 -39.67 -0.40 -0.98 16 25 C -0.14 -1.04 10.06 -39.51 -0.40 -1.43 16 26 C -0.06 -0.53 10.03 -39.73 -0.40 -0.93 16 27 C -0.11 -1.15 6.12 -104.58 -0.64 -1.79 16 28 C 0.09 1.40 6.54 -3.36 -0.02 1.38 16 29 C 0.13 2.66 4.54 -3.36 -0.02 2.64 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.44 7.94 -51.93 -0.41 1.03 16 33 H 0.08 1.53 6.99 -51.93 -0.36 1.17 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.41 3.71 8.96 -40.82 -0.37 3.35 16 38 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 40 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.07 0.95 5.51 -51.93 -0.29 0.66 16 44 H 0.03 0.67 6.69 -51.93 -0.35 0.33 16 45 H 0.08 1.66 5.58 -51.93 -0.29 1.37 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -35.02 359.89 -10.15 -45.17 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.90 Total: 2.58 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: -4.42 Total: 7.90 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.25 Total: -57.87 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.52 Total: -19.18 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.49 Total: 15.97 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.02 -10.15 -45.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.289 kcal (2) G-P(sol) polarization free energy of solvation -35.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds