Wall clock time and date at job start Sat Apr 11 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00219 * 2 1 4 4 H 1.48493 * 109.47021 * 275.37558 * 3 2 1 5 5 H 1.48499 * 109.46707 * 35.37360 * 3 2 1 6 6 H 1.48497 * 109.47135 * 155.37270 * 3 2 1 7 7 C 1.38819 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99644 * 35.24133 * 7 2 1 9 9 N 1.36936 * 119.99756 * 215.23640 * 7 2 1 10 10 C 1.46959 * 120.59342 * 207.36131 * 9 7 2 11 11 C 1.53372 * 108.63851 * 235.25204 * 10 9 7 12 12 N 1.46964 * 108.63336 * 310.57794 * 11 10 9 13 13 C 1.34767 * 120.59195 * 235.20158 * 12 11 10 14 14 O 1.21287 * 120.00468 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00010 * 180.02562 * 13 12 11 16 16 H 1.08998 * 115.58164 * 325.78610 * 15 13 12 17 17 C 1.53140 * 117.51506 * 111.56703 * 15 13 12 18 18 C 1.52333 * 117.51746 * 179.97438 * 15 13 12 19 19 C 1.50784 * 121.76707 * 3.63813 * 18 15 13 20 20 O 1.21287 * 126.61607 * 323.54811 * 19 18 15 21 21 N 1.34601 * 106.76571 * 143.79746 * 19 18 15 22 22 C 1.39613 * 112.21497 * 359.97438 * 21 19 18 23 23 C 1.39329 * 130.80870 * 180.02562 * 22 21 19 24 24 C 1.37933 * 120.18639 * 179.97438 * 23 22 21 25 25 C 1.38305 * 120.34836 * 359.97438 * 24 23 22 26 26 C 1.38371 * 119.83515 * 0.04807 * 25 24 23 27 27 C 1.37684 * 119.98579 * 359.93285 * 26 25 24 28 28 C 1.46968 * 118.81143 * 55.47908 * 12 11 10 29 29 C 1.46969 * 120.59348 * 27.39281 * 9 7 2 30 30 H 0.97003 * 119.99801 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.61018 * 115.50514 * 10 9 7 32 32 H 1.09007 * 109.75331 * 355.07876 * 10 9 7 33 33 H 1.08998 * 109.61148 * 190.82733 * 11 10 9 34 34 H 1.09004 * 109.74789 * 70.40739 * 11 10 9 35 35 H 1.08995 * 117.52101 * 0.02562 * 17 15 13 36 36 H 1.09002 * 117.51326 * 214.87628 * 17 15 13 37 37 H 0.96997 * 123.89173 * 179.97438 * 21 19 18 38 38 H 1.07997 * 119.90796 * 359.96988 * 23 22 21 39 39 H 1.07997 * 119.82789 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.08412 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.01256 * 179.97438 * 26 25 24 42 42 H 1.08997 * 109.61080 * 64.26423 * 28 12 11 43 43 H 1.09001 * 109.60798 * 184.77795 * 28 12 11 44 44 H 1.08998 * 109.60382 * 244.48787 * 29 9 7 45 45 H 1.08993 * 109.60940 * 4.82835 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3842 2.1119 -1.3939 5 1 1.5091 2.6172 0.8105 6 1 3.5999 1.4100 0.5834 7 6 2.0102 -1.2022 0.0005 8 1 1.6186 -2.0520 -0.5388 9 7 3.1914 -1.3106 0.6848 10 6 4.2162 -2.2744 0.2600 11 6 4.5602 -3.1801 1.4490 12 7 4.8255 -2.3350 2.6217 13 6 5.9876 -2.4423 3.2957 14 8 6.8256 -3.2420 2.9362 15 6 6.2454 -1.5694 4.4968 16 1 5.8222 -0.5661 4.4490 17 6 6.2992 -2.2500 5.8676 18 6 7.5773 -1.7382 5.2166 19 6 8.6405 -2.6791 4.7087 20 8 8.4612 -3.7580 4.1845 21 7 9.8271 -2.0930 4.9543 22 6 9.6839 -0.8511 5.5758 23 6 10.6388 0.0719 5.9969 24 6 10.2470 1.2508 6.5962 25 6 8.9048 1.5270 6.7837 26 6 7.9499 0.6155 6.3689 27 6 8.3372 -0.5622 5.7699 28 6 3.7983 -1.3751 3.0500 29 6 3.4567 -0.4655 1.8576 30 1 -0.4850 0.8401 0.0004 31 1 5.1095 -1.7400 -0.0632 32 1 3.8344 -2.8796 -0.5623 33 1 5.4463 -3.7701 1.2152 34 1 3.7229 -3.8455 1.6594 35 1 6.1485 -3.3290 5.9004 36 1 5.9114 -1.6942 6.7213 37 1 10.6830 -2.4880 4.7258 38 1 11.6888 -0.1363 5.8537 39 1 10.9921 1.9624 6.9200 40 1 8.6027 2.4516 7.2531 41 1 6.9011 0.8280 6.5142 42 1 2.9061 -1.9128 3.3707 43 1 4.1813 -0.7726 3.8736 44 1 4.2959 0.1977 1.6482 45 1 2.5715 0.1267 2.0895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933236025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:52 Heat of formation + Delta-G solvation = 31.803521 kcal Electronic energy + Delta-G solvation = -29948.909916 eV Core-core repulsion = 25933.376676 eV Total energy + Delta-G solvation = -4015.533240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.80229 -40.97768 -39.36475 -38.64931 -37.18979 -36.45877 -35.58883 -33.54850 -32.30650 -31.69237 -30.14870 -29.01521 -27.07147 -25.97932 -24.82576 -24.34625 -23.48284 -22.47476 -22.18524 -21.07116 -19.87987 -18.98649 -18.76069 -18.11917 -17.58591 -17.07593 -16.86144 -16.64720 -16.35290 -16.21608 -16.02045 -15.56283 -15.30998 -15.16875 -15.08388 -14.76563 -14.68023 -14.25068 -14.16389 -14.00575 -13.83365 -13.48486 -13.29443 -12.93486 -12.75676 -12.54022 -12.30238 -12.17462 -12.12704 -12.02262 -11.88876 -11.71973 -11.58308 -11.37233 -11.30117 -10.67966 -10.45795 -9.82359 -9.70668 -8.94031 -8.86332 -8.21984 -5.41396 0.13577 0.42077 1.28130 1.36386 1.48907 1.55325 1.63289 1.91573 2.01039 2.45339 2.75161 2.92975 2.99134 3.07622 3.23674 3.33270 3.37307 3.61945 3.75894 4.02305 4.12205 4.18355 4.22286 4.24877 4.37123 4.46669 4.48068 4.57784 4.59492 4.60474 4.66985 4.74124 4.77622 4.84797 4.86702 4.99230 5.08723 5.17696 5.21353 5.51122 5.52514 5.62413 5.69544 5.85639 5.87747 6.10977 6.12486 6.46962 6.89879 7.02103 7.26342 7.61438 8.04274 8.96306 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014862 B = 0.003271 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.549380 B = 8559.169708 C = 9729.031082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.902 3.098 4 H -0.307 1.307 5 H -0.289 1.289 6 H -0.233 1.233 7 C -0.267 4.267 8 H 0.048 0.952 9 N -0.613 5.613 10 C 0.135 3.865 11 C 0.108 3.892 12 N -0.600 5.600 13 C 0.518 3.482 14 O -0.551 6.551 15 C -0.141 4.141 16 H 0.166 0.834 17 C -0.075 4.075 18 C -0.127 4.127 19 C 0.539 3.461 20 O -0.494 6.494 21 N -0.663 5.663 22 C 0.126 3.874 23 C -0.145 4.145 24 C -0.084 4.084 25 C -0.139 4.139 26 C -0.067 4.067 27 C -0.120 4.120 28 C 0.097 3.903 29 C 0.124 3.876 30 H 0.264 0.736 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.163 0.837 37 H 0.418 0.582 38 H 0.142 0.858 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.151 0.849 42 H 0.071 0.929 43 H 0.121 0.879 44 H 0.037 0.963 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.232 4.933 20.431 29.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.209 4.209 3 Si 0.729 3.271 4 H -0.236 1.236 5 H -0.215 1.215 6 H -0.156 1.156 7 C -0.395 4.395 8 H 0.065 0.935 9 N -0.337 5.337 10 C 0.009 3.991 11 C -0.017 4.017 12 N -0.332 5.332 13 C 0.306 3.694 14 O -0.429 6.429 15 C -0.162 4.162 16 H 0.183 0.817 17 C -0.112 4.112 18 C -0.131 4.131 19 C 0.326 3.674 20 O -0.367 6.367 21 N -0.307 5.307 22 C 0.029 3.971 23 C -0.166 4.166 24 C -0.102 4.102 25 C -0.158 4.158 26 C -0.085 4.085 27 C -0.123 4.123 28 C -0.027 4.027 29 C -0.001 4.001 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.181 0.819 37 H 0.257 0.743 38 H 0.160 0.840 39 H 0.176 0.824 40 H 0.174 0.826 41 H 0.169 0.831 42 H 0.089 0.911 43 H 0.139 0.861 44 H 0.055 0.945 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.309 3.909 19.902 28.702 hybrid contribution 0.346 0.220 -1.264 1.329 sum 20.655 4.129 18.637 28.125 Atomic orbital electron populations 1.70165 1.07738 1.27616 1.51750 1.25738 0.95292 1.00402 0.99432 0.86574 0.81812 0.81505 0.77230 1.23565 1.21496 1.15625 1.18692 0.95798 0.95556 1.29489 0.93451 1.44384 1.16052 1.43773 1.29490 1.21366 0.90959 0.91521 0.95235 1.21928 1.00799 0.93068 0.85868 1.48012 1.16818 1.39203 1.29216 1.20273 0.81246 0.83445 0.84416 1.90909 1.44973 1.38554 1.68416 1.22252 0.98076 1.02903 0.93004 0.81668 1.23157 0.91988 1.02040 0.94025 1.20086 0.89466 0.97262 1.06239 1.19704 0.84461 0.85665 0.77612 1.90873 1.83525 1.21699 1.40556 1.43608 1.09672 1.18819 1.58648 1.18523 0.95622 0.86425 0.96480 1.20669 0.98823 0.94000 1.03142 1.21300 0.97281 0.95497 0.96104 1.21449 0.92525 1.00397 1.01444 1.20605 1.01855 0.90556 0.95465 1.19045 0.91802 0.96029 1.05455 1.22539 0.91040 0.91387 0.97719 1.21914 0.98956 0.92669 0.86610 0.92704 0.95688 0.91020 0.90033 0.91649 0.88226 0.81893 0.74285 0.83986 0.82420 0.82552 0.83093 0.91057 0.86113 0.94488 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 13.97 21.65 0.30 -55.32 16 2 C -0.01 -0.60 4.85 84.86 0.41 -0.19 16 3 Si 0.90 42.31 26.43 68.60 1.81 44.12 16 4 H -0.31 -15.08 7.11 99.48 0.71 -14.37 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.23 -9.93 4.82 99.48 0.48 -9.45 16 7 C -0.27 -14.59 9.86 84.04 0.83 -13.77 16 8 H 0.05 2.86 8.06 -2.91 -0.02 2.84 16 9 N -0.61 -28.00 2.70 -697.35 -1.88 -29.88 16 10 C 0.14 5.43 6.67 86.42 0.58 6.01 16 11 C 0.11 3.90 6.59 86.42 0.57 4.47 16 12 N -0.60 -20.02 2.94 -817.15 -2.40 -22.42 16 13 C 0.52 17.19 7.48 87.66 0.66 17.85 16 14 O -0.55 -22.90 11.78 21.02 0.25 -22.65 16 15 C -0.14 -3.26 4.98 -11.71 -0.06 -3.31 16 16 H 0.17 2.80 6.60 -2.39 -0.02 2.78 16 17 C -0.07 -1.35 9.99 30.41 0.30 -1.05 16 18 C -0.13 -2.93 2.41 -54.15 -0.13 -3.06 16 19 C 0.54 16.21 7.76 87.71 0.68 16.89 16 20 O -0.49 -19.43 14.49 21.02 0.30 -19.13 16 21 N -0.66 -15.09 5.90 -303.37 -1.79 -16.87 16 22 C 0.13 2.39 7.12 38.37 0.27 2.66 16 23 C -0.15 -1.89 10.07 22.46 0.23 -1.67 16 24 C -0.08 -0.78 10.02 22.21 0.22 -0.56 16 25 C -0.14 -1.30 10.06 22.32 0.22 -1.07 16 26 C -0.07 -0.82 10.03 22.17 0.22 -0.60 16 27 C -0.12 -2.22 6.12 -19.84 -0.12 -2.34 16 28 C 0.10 2.90 6.54 86.56 0.57 3.47 16 29 C 0.12 4.79 4.54 86.56 0.39 5.19 16 30 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 2.86 7.94 -2.38 -0.02 2.84 16 33 H 0.08 3.02 6.99 -2.39 -0.02 3.01 16 34 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.16 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.42 7.75 8.96 -92.71 -0.83 6.92 16 38 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 39 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 40 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 41 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.12 2.50 5.51 -2.39 -0.01 2.49 16 44 H 0.04 1.41 6.69 -2.39 -0.02 1.40 16 45 H 0.07 2.70 5.58 -2.39 -0.01 2.69 16 Total: -1.00 -80.31 359.89 2.42 -77.88 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -0.02 Total: 15.34 kcal Atomic # 6 Polarization: 23.08 SS G_CDS: 5.84 Total: 28.93 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -5.77 Total: -124.50 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: 0.55 Total: -41.78 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.81 Total: 44.12 kcal Total: -80.31 2.42 -77.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.687 kcal (2) G-P(sol) polarization free energy of solvation -80.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds