Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00227 * 2 1 4 4 H 1.48507 * 109.46941 * 240.00039 * 3 2 1 5 5 H 1.48501 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48487 * 109.47498 * 120.00107 * 3 2 1 7 7 C 1.38821 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99753 * 196.92594 * 7 2 1 9 9 N 1.36936 * 119.99741 * 16.92816 * 7 2 1 10 10 C 1.46959 * 120.58926 * 208.59955 * 9 7 2 11 11 C 1.53373 * 108.63528 * 235.24743 * 10 9 7 12 12 N 1.46967 * 108.63535 * 310.58068 * 11 10 9 13 13 C 1.34772 * 120.59227 * 235.20302 * 12 11 10 14 14 O 1.21277 * 120.00142 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99978 * 180.02562 * 13 12 11 16 16 H 1.09001 * 115.55734 * 298.60302 * 15 13 12 17 17 C 1.53139 * 117.55722 * 152.79653 * 15 13 12 18 18 C 1.52335 * 117.52050 * 84.35132 * 15 13 12 19 19 C 1.50783 * 121.76400 * 218.57406 * 18 15 13 20 20 O 1.21283 * 126.61883 * 323.80572 * 19 18 15 21 21 N 1.34602 * 106.76174 * 143.78967 * 19 18 15 22 22 C 1.39624 * 112.22085 * 359.73400 * 21 19 18 23 23 C 1.39318 * 130.81069 * 179.55426 * 22 21 19 24 24 C 1.37932 * 120.18706 * 180.39509 * 23 22 21 25 25 C 1.38306 * 120.34913 * 0.27832 * 24 23 22 26 26 C 1.38374 * 119.82824 * 0.02562 * 25 24 23 27 27 C 1.37677 * 119.98926 * 359.97438 * 26 25 24 28 28 C 1.46963 * 118.81032 * 55.47447 * 12 11 10 29 29 C 1.46967 * 120.59548 * 28.62466 * 9 7 2 30 30 H 0.97003 * 119.99750 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.61025 * 115.50631 * 10 9 7 32 32 H 1.08998 * 109.61692 * 354.99463 * 10 9 7 33 33 H 1.09003 * 109.61166 * 190.83254 * 11 10 9 34 34 H 1.08997 * 109.60599 * 70.32238 * 11 10 9 35 35 H 1.09003 * 117.51742 * 145.13318 * 17 15 13 36 36 H 1.09001 * 117.51094 * 0.02562 * 17 15 13 37 37 H 0.97005 * 123.89264 * 179.97438 * 21 19 18 38 38 H 1.08002 * 119.90819 * 0.67287 * 23 22 21 39 39 H 1.08004 * 119.82762 * 180.25101 * 24 23 22 40 40 H 1.07998 * 120.08260 * 179.97438 * 25 24 23 41 41 H 1.07999 * 120.00259 * 180.02562 * 26 25 24 42 42 H 1.09006 * 109.60750 * 64.26671 * 28 12 11 43 43 H 1.09000 * 109.60943 * 184.77627 * 28 12 11 44 44 H 1.08997 * 109.60635 * 244.49681 * 29 9 7 45 45 H 1.08996 * 109.60673 * 5.00902 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0550 -1.2224 0.2728 9 7 1.3699 -2.3626 -0.3443 10 6 1.8086 -3.6515 0.2088 11 6 2.1074 -4.6071 -0.9531 12 7 0.9697 -4.5857 -1.8832 13 6 0.3401 -5.7278 -2.2232 14 8 0.7116 -6.7858 -1.7610 15 6 -0.8247 -5.6905 -3.1785 16 1 -1.6862 -5.1106 -2.8473 17 6 -1.0953 -6.9443 -4.0152 18 6 -0.5127 -5.6980 -4.6696 19 6 -1.3060 -4.8724 -5.6507 20 8 -2.4963 -4.6436 -5.6076 21 7 -0.4381 -4.4380 -6.5834 22 6 0.8646 -4.8761 -6.3374 23 6 2.0452 -4.6658 -7.0465 24 6 3.2287 -5.2176 -6.6024 25 6 3.2529 -5.9882 -5.4541 26 6 2.0836 -6.2071 -4.7474 27 6 0.9004 -5.6580 -5.1876 28 6 0.5346 -3.2973 -2.4405 29 6 0.2322 -2.3412 -1.2743 30 1 -0.4850 0.8401 0.0004 31 1 1.0186 -4.0699 0.8325 32 1 2.7100 -3.5065 0.8042 33 1 2.2470 -5.6176 -0.5690 34 1 3.0096 -4.2821 -1.4712 35 1 -2.1346 -7.1890 -4.2342 36 1 -0.4307 -7.7967 -3.8743 37 1 -0.6882 -3.8815 -7.3375 38 1 2.0345 -4.0653 -7.9441 39 1 4.1412 -5.0475 -7.1545 40 1 4.1820 -6.4185 -5.1105 41 1 2.0994 -6.8081 -3.8501 42 1 1.3275 -2.8812 -3.0621 43 1 -0.3647 -3.4426 -3.0390 44 1 -0.6699 -2.6661 -0.7562 45 1 0.0927 -1.3307 -1.6584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933236026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = 35.931084 kcal Electronic energy + Delta-G solvation = -30743.614857 eV Core-core repulsion = 26728.260602 eV Total energy + Delta-G solvation = -4015.354256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.98435 -39.66410 -38.59141 -37.11919 -36.08845 -35.67795 -33.87567 -31.41385 -30.99403 -30.19551 -29.40693 -27.26802 -26.13234 -24.56799 -23.33715 -22.78024 -22.47582 -21.74911 -20.53435 -19.99154 -18.65353 -17.92271 -17.52384 -16.90220 -16.19257 -15.93659 -15.77456 -15.49989 -15.38666 -14.76802 -14.46123 -14.35024 -14.00806 -13.84135 -13.70314 -13.41014 -13.31062 -13.16618 -13.05520 -12.43533 -12.32398 -12.20167 -11.77548 -11.40556 -11.34373 -11.25157 -11.01089 -10.85903 -10.78489 -10.73085 -10.55111 -10.29011 -10.26625 -10.06668 -9.87894 -9.50179 -8.94717 -8.62279 -8.30032 -8.20079 -6.73964 -5.88081 -3.33051 0.89502 1.14458 2.09268 2.66290 2.89249 3.21634 3.32960 3.39290 3.40009 3.54770 3.81259 3.91380 4.10330 4.24308 4.42047 4.63716 4.72359 4.86480 4.88571 5.10405 5.24623 5.28902 5.32338 5.36239 5.38171 5.52128 5.75341 5.77239 5.81687 5.83948 5.91050 5.91744 6.10319 6.15642 6.20536 6.30675 6.33731 6.39080 6.40669 6.56933 6.74474 6.82283 6.88028 7.16707 7.42662 7.69094 7.76366 7.82823 8.33350 8.43772 9.09159 9.71782 10.28813 11.19728 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011718 B = 0.003892 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.983698 B = 7193.022461 C = 7375.506367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.590 5.590 10 C 0.131 3.869 11 C 0.096 3.904 12 N -0.582 5.582 13 C 0.543 3.457 14 O -0.552 6.552 15 C -0.126 4.126 16 H 0.142 0.858 17 C -0.091 4.091 18 C -0.134 4.134 19 C 0.565 3.435 20 O -0.494 6.494 21 N -0.656 5.656 22 C 0.146 3.854 23 C -0.140 4.140 24 C -0.084 4.084 25 C -0.136 4.136 26 C -0.059 4.059 27 C -0.101 4.101 28 C 0.086 3.914 29 C 0.158 3.842 30 H 0.256 0.744 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.415 0.585 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.024 0.976 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.185 -11.937 -14.635 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.004 3.996 11 C -0.028 4.028 12 N -0.313 5.313 13 C 0.330 3.670 14 O -0.432 6.432 15 C -0.147 4.147 16 H 0.160 0.840 17 C -0.128 4.128 18 C -0.137 4.137 19 C 0.352 3.648 20 O -0.368 6.368 21 N -0.299 5.299 22 C 0.049 3.951 23 C -0.161 4.161 24 C -0.103 4.103 25 C -0.155 4.155 26 C -0.077 4.077 27 C -0.104 4.104 28 C -0.039 4.039 29 C 0.032 3.968 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.254 0.746 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.552 -12.208 -14.241 18.930 hybrid contribution 0.236 1.546 -0.470 1.633 sum 2.788 -10.662 -14.711 18.381 Atomic orbital electron populations 1.69996 1.05314 1.25872 1.53409 1.25079 0.95288 0.98533 1.00524 0.86348 0.78924 0.83164 0.78203 1.20967 1.21582 1.20771 1.19150 0.92598 0.84584 1.42295 0.91513 1.43956 1.36293 1.01747 1.49250 1.21304 0.98498 0.87045 0.92716 1.22252 0.87486 1.01130 0.91909 1.47960 1.32062 1.06781 1.44495 1.19269 0.82597 0.83835 0.81322 1.90647 1.66488 1.29895 1.56177 1.22227 1.00645 1.03912 0.87918 0.84040 1.22980 1.02934 0.90367 0.96561 1.20203 0.93735 1.05214 0.94594 1.19307 0.85509 0.78671 0.81287 1.90811 1.12753 1.58661 1.74582 1.43519 1.06923 1.51183 1.28321 1.18127 0.85048 0.96245 0.95691 1.20313 0.90197 1.04316 1.01236 1.20878 0.96990 0.96179 0.96239 1.21054 0.97906 1.00568 0.95949 1.20434 0.90414 0.97689 0.99165 1.18892 0.92845 1.02106 0.96525 1.22718 0.98865 0.83862 0.98423 1.21257 0.89278 0.98428 0.87873 0.93390 0.95806 0.91458 0.89885 0.91809 0.86375 0.86158 0.74610 0.85618 0.85196 0.85290 0.85139 0.91871 0.91600 0.95752 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.39 11.19 55.49 0.62 -24.77 16 2 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 3 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.76 9.58 -15.06 -0.14 -6.91 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.19 2.97 -171.77 -0.51 -14.70 16 10 C 0.13 2.69 6.67 -3.60 -0.02 2.67 16 11 C 0.10 1.70 6.59 -3.59 -0.02 1.67 16 12 N -0.58 -10.23 2.94 -172.22 -0.51 -10.74 16 13 C 0.54 9.05 5.51 -10.99 -0.06 8.99 16 14 O -0.55 -10.15 15.40 5.56 0.09 -10.07 16 15 C -0.13 -1.79 4.16 -92.04 -0.38 -2.17 16 16 H 0.14 2.00 7.91 -51.93 -0.41 1.59 16 17 C -0.09 -1.08 9.80 -27.00 -0.26 -1.34 16 18 C -0.13 -1.75 2.34 -157.52 -0.37 -2.11 16 19 C 0.56 7.67 8.47 -11.02 -0.09 7.57 16 20 O -0.49 -7.94 18.03 5.56 0.10 -7.84 16 21 N -0.66 -7.28 5.90 -9.79 -0.06 -7.33 16 22 C 0.15 1.66 7.12 -83.59 -0.59 1.06 16 23 C -0.14 -1.32 10.07 -39.29 -0.40 -1.72 16 24 C -0.08 -0.76 10.02 -39.67 -0.40 -1.16 16 25 C -0.14 -1.38 10.07 -39.51 -0.40 -1.78 16 26 C -0.06 -0.72 9.26 -39.74 -0.37 -1.08 16 27 C -0.10 -1.28 5.73 -104.58 -0.60 -1.87 16 28 C 0.09 1.58 6.54 -3.37 -0.02 1.55 16 29 C 0.16 3.61 5.52 -3.37 -0.02 3.59 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 33 H 0.08 1.41 6.99 -51.93 -0.36 1.05 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.12 1.38 7.93 -51.93 -0.41 0.97 16 37 H 0.42 3.53 8.96 -40.82 -0.37 3.16 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.13 1.74 6.75 -52.49 -0.35 1.39 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 1.12 6.09 -51.93 -0.32 0.80 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 2.52 6.00 -51.93 -0.31 2.21 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -31.62 369.32 -9.85 -41.47 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.88 Total: 5.41 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -4.24 Total: 7.01 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.45 Total: -57.54 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.19 Total: -17.91 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.62 -9.85 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.398 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds