Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00227 * 2 1 4 4 H 1.48507 * 109.46941 * 240.00039 * 3 2 1 5 5 H 1.48501 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48487 * 109.47498 * 120.00107 * 3 2 1 7 7 C 1.38821 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99753 * 196.92594 * 7 2 1 9 9 N 1.36936 * 119.99741 * 16.92816 * 7 2 1 10 10 C 1.46959 * 120.58926 * 208.59955 * 9 7 2 11 11 C 1.53373 * 108.63528 * 235.24743 * 10 9 7 12 12 N 1.46967 * 108.63535 * 310.58068 * 11 10 9 13 13 C 1.34772 * 120.59227 * 235.20302 * 12 11 10 14 14 O 1.21277 * 120.00142 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99978 * 180.02562 * 13 12 11 16 16 H 1.09001 * 115.55734 * 298.60302 * 15 13 12 17 17 C 1.53139 * 117.55722 * 152.79653 * 15 13 12 18 18 C 1.52335 * 117.52050 * 84.35132 * 15 13 12 19 19 C 1.50783 * 121.76400 * 218.57406 * 18 15 13 20 20 O 1.21283 * 126.61883 * 323.80572 * 19 18 15 21 21 N 1.34602 * 106.76174 * 143.78967 * 19 18 15 22 22 C 1.39624 * 112.22085 * 359.73400 * 21 19 18 23 23 C 1.39318 * 130.81069 * 179.55426 * 22 21 19 24 24 C 1.37932 * 120.18706 * 180.39509 * 23 22 21 25 25 C 1.38306 * 120.34913 * 0.27832 * 24 23 22 26 26 C 1.38374 * 119.82824 * 0.02562 * 25 24 23 27 27 C 1.37677 * 119.98926 * 359.97438 * 26 25 24 28 28 C 1.46963 * 118.81032 * 55.47447 * 12 11 10 29 29 C 1.46967 * 120.59548 * 28.62466 * 9 7 2 30 30 H 0.97003 * 119.99750 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.61025 * 115.50631 * 10 9 7 32 32 H 1.08998 * 109.61692 * 354.99463 * 10 9 7 33 33 H 1.09003 * 109.61166 * 190.83254 * 11 10 9 34 34 H 1.08997 * 109.60599 * 70.32238 * 11 10 9 35 35 H 1.09003 * 117.51742 * 145.13318 * 17 15 13 36 36 H 1.09001 * 117.51094 * 0.02562 * 17 15 13 37 37 H 0.97005 * 123.89264 * 179.97438 * 21 19 18 38 38 H 1.08002 * 119.90819 * 0.67287 * 23 22 21 39 39 H 1.08004 * 119.82762 * 180.25101 * 24 23 22 40 40 H 1.07998 * 120.08260 * 179.97438 * 25 24 23 41 41 H 1.07999 * 120.00259 * 180.02562 * 26 25 24 42 42 H 1.09006 * 109.60750 * 64.26671 * 28 12 11 43 43 H 1.09000 * 109.60943 * 184.77627 * 28 12 11 44 44 H 1.08997 * 109.60635 * 244.49681 * 29 9 7 45 45 H 1.08996 * 109.60673 * 5.00902 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0550 -1.2224 0.2728 9 7 1.3699 -2.3626 -0.3443 10 6 1.8086 -3.6515 0.2088 11 6 2.1074 -4.6071 -0.9531 12 7 0.9697 -4.5857 -1.8832 13 6 0.3401 -5.7278 -2.2232 14 8 0.7116 -6.7858 -1.7610 15 6 -0.8247 -5.6905 -3.1785 16 1 -1.6862 -5.1106 -2.8473 17 6 -1.0953 -6.9443 -4.0152 18 6 -0.5127 -5.6980 -4.6696 19 6 -1.3060 -4.8724 -5.6507 20 8 -2.4963 -4.6436 -5.6076 21 7 -0.4381 -4.4380 -6.5834 22 6 0.8646 -4.8761 -6.3374 23 6 2.0452 -4.6658 -7.0465 24 6 3.2287 -5.2176 -6.6024 25 6 3.2529 -5.9882 -5.4541 26 6 2.0836 -6.2071 -4.7474 27 6 0.9004 -5.6580 -5.1876 28 6 0.5346 -3.2973 -2.4405 29 6 0.2322 -2.3412 -1.2743 30 1 -0.4850 0.8401 0.0004 31 1 1.0186 -4.0699 0.8325 32 1 2.7100 -3.5065 0.8042 33 1 2.2470 -5.6176 -0.5690 34 1 3.0096 -4.2821 -1.4712 35 1 -2.1346 -7.1890 -4.2342 36 1 -0.4307 -7.7967 -3.8743 37 1 -0.6882 -3.8815 -7.3375 38 1 2.0345 -4.0653 -7.9441 39 1 4.1412 -5.0475 -7.1545 40 1 4.1820 -6.4185 -5.1105 41 1 2.0994 -6.8081 -3.8501 42 1 1.3275 -2.8812 -3.0621 43 1 -0.3647 -3.4426 -3.0390 44 1 -0.6699 -2.6661 -0.7562 45 1 0.0927 -1.3307 -1.6584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933236026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = 16.902412 kcal Electronic energy + Delta-G solvation = -30744.440003 eV Core-core repulsion = 26728.260602 eV Total energy + Delta-G solvation = -4016.179401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.95808 -41.00838 -39.52889 -38.65992 -37.24516 -36.62223 -35.61305 -33.22582 -31.97600 -31.74905 -30.24376 -28.94506 -27.21360 -26.02157 -24.99563 -24.02771 -23.61290 -22.62251 -21.95658 -21.13029 -20.08991 -19.09836 -18.64375 -18.12348 -17.68040 -17.25618 -16.89142 -16.70876 -16.50244 -16.41969 -15.64157 -15.51384 -15.31296 -15.23248 -15.14928 -14.95810 -14.80019 -14.15378 -14.07940 -13.89895 -13.45740 -13.29514 -13.24070 -13.02770 -12.65595 -12.53532 -12.35411 -12.25886 -12.23795 -12.04982 -11.93429 -11.90182 -11.71454 -11.64957 -11.35194 -10.88798 -10.59993 -9.86717 -9.77140 -9.05617 -8.67475 -7.89860 -5.38492 0.00689 0.33926 1.09819 1.48393 1.50010 1.53600 1.57076 1.81066 1.94684 2.50269 2.59391 2.88294 2.89845 3.14504 3.23837 3.26841 3.51244 3.57949 3.68631 3.92424 4.16413 4.18639 4.20669 4.29987 4.37024 4.40985 4.49753 4.50967 4.56780 4.60668 4.65175 4.72029 4.79882 4.83951 5.00435 5.05010 5.11178 5.20280 5.41409 5.46476 5.52908 5.57125 5.58764 5.62968 5.71163 6.02349 6.33806 6.39213 6.83356 7.05749 7.08921 7.76915 8.30752 9.15520 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011718 B = 0.003892 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.983698 B = 7193.022461 C = 7375.506367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.265 4.265 8 H 0.072 0.928 9 N -0.606 5.606 10 C 0.131 3.869 11 C 0.108 3.892 12 N -0.587 5.587 13 C 0.550 3.450 14 O -0.568 6.568 15 C -0.145 4.145 16 H 0.139 0.861 17 C -0.074 4.074 18 C -0.131 4.131 19 C 0.561 3.439 20 O -0.527 6.527 21 N -0.644 5.644 22 C 0.131 3.869 23 C -0.132 4.132 24 C -0.080 4.080 25 C -0.137 4.137 26 C -0.075 4.075 27 C -0.120 4.120 28 C 0.111 3.889 29 C 0.166 3.834 30 H 0.251 0.749 31 H 0.009 0.991 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.125 0.875 37 H 0.427 0.573 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.147 0.853 41 H 0.114 0.886 42 H 0.064 0.936 43 H 0.080 0.920 44 H -0.002 1.002 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.205 -12.345 -16.663 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.796 3.204 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.394 4.394 8 H 0.090 0.910 9 N -0.329 5.329 10 C 0.004 3.996 11 C -0.015 4.015 12 N -0.318 5.318 13 C 0.338 3.662 14 O -0.448 6.448 15 C -0.166 4.166 16 H 0.157 0.843 17 C -0.111 4.111 18 C -0.135 4.135 19 C 0.349 3.651 20 O -0.403 6.403 21 N -0.288 5.288 22 C 0.034 3.966 23 C -0.153 4.153 24 C -0.098 4.098 25 C -0.155 4.155 26 C -0.093 4.093 27 C -0.123 4.123 28 C -0.014 4.014 29 C 0.039 3.961 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.153 0.847 36 H 0.143 0.857 37 H 0.268 0.732 38 H 0.172 0.828 39 H 0.181 0.819 40 H 0.165 0.835 41 H 0.132 0.868 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.016 0.984 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.614 -12.646 -16.292 21.134 hybrid contribution -0.319 1.593 0.170 1.634 sum 4.295 -11.052 -16.122 20.013 Atomic orbital electron populations 1.70157 1.06764 1.26128 1.55010 1.25816 0.95957 1.01556 1.00834 0.85338 0.77553 0.79071 0.78457 1.20110 1.22269 1.20140 1.19494 0.92980 0.85536 1.41436 0.91033 1.44198 1.36311 1.02454 1.49950 1.21402 0.98227 0.86120 0.93815 1.22074 0.87863 1.00680 0.90930 1.47947 1.32336 1.06731 1.44784 1.19547 0.82540 0.83081 0.81021 1.90631 1.67075 1.30323 1.56807 1.22127 0.99651 1.06357 0.88467 0.84316 1.23095 1.03993 0.89653 0.94375 1.20233 0.94500 1.05491 0.93270 1.19371 0.85258 0.78644 0.81799 1.90791 1.14023 1.59998 1.75518 1.43376 1.06649 1.50676 1.28075 1.18331 0.85524 0.96730 0.95979 1.20718 0.89372 1.03610 1.01602 1.21293 0.98065 0.94792 0.95656 1.21353 0.97820 1.00303 0.96057 1.20411 0.91223 0.98399 0.99284 1.18957 0.92553 1.03335 0.97461 1.22298 0.99474 0.83242 0.96369 1.21035 0.88242 0.97965 0.88846 0.93968 0.97265 0.90541 0.88887 0.90825 0.84680 0.85734 0.73183 0.82800 0.81941 0.83511 0.86822 0.91761 0.90221 0.98368 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.99 11.19 21.65 0.24 -53.74 16 2 C -0.05 -2.48 4.92 84.87 0.42 -2.06 16 3 Si 0.97 43.35 29.59 68.60 2.03 45.38 16 4 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.26 -13.97 9.58 84.04 0.80 -13.17 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 9 N -0.61 -29.50 2.97 -697.37 -2.07 -31.57 16 10 C 0.13 5.35 6.67 86.42 0.58 5.93 16 11 C 0.11 3.73 6.59 86.42 0.57 4.30 16 12 N -0.59 -20.41 2.94 -817.17 -2.40 -22.82 16 13 C 0.55 18.12 5.51 87.66 0.48 18.60 16 14 O -0.57 -20.58 15.40 -3.02 -0.05 -20.63 16 15 C -0.14 -4.08 4.16 -11.71 -0.05 -4.13 16 16 H 0.14 3.98 7.91 -2.39 -0.02 3.96 16 17 C -0.07 -1.69 9.80 30.42 0.30 -1.39 16 18 C -0.13 -3.33 2.34 -54.13 -0.13 -3.45 16 19 C 0.56 14.85 8.47 87.71 0.74 15.59 16 20 O -0.53 -16.86 18.03 -3.04 -0.05 -16.92 16 21 N -0.64 -13.29 5.90 -303.37 -1.79 -15.08 16 22 C 0.13 2.69 7.12 38.36 0.27 2.96 16 23 C -0.13 -2.03 10.07 22.46 0.23 -1.81 16 24 C -0.08 -1.13 10.02 22.21 0.22 -0.90 16 25 C -0.14 -2.40 10.07 22.32 0.22 -2.18 16 26 C -0.07 -1.72 9.26 22.17 0.21 -1.51 16 27 C -0.12 -2.88 5.73 -19.84 -0.11 -2.99 16 28 C 0.11 4.07 6.54 86.56 0.57 4.64 16 29 C 0.17 7.78 5.52 86.56 0.48 8.26 16 30 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.08 2.94 7.93 -2.39 -0.02 2.92 16 33 H 0.09 3.05 6.99 -2.39 -0.02 3.04 16 34 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.12 2.74 7.93 -2.39 -0.02 2.72 16 37 H 0.43 6.51 8.96 -92.70 -0.83 5.68 16 38 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.11 2.96 6.75 -2.91 -0.02 2.94 16 42 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 43 H 0.08 2.72 6.09 -2.39 -0.01 2.70 16 44 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.07 3.78 6.00 -2.39 -0.01 3.76 16 Total: -1.00 -68.86 369.32 1.92 -66.94 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.21 Total: 21.73 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: 5.80 Total: 26.69 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -6.02 Total: -123.20 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.10 Total: -37.54 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -68.86 1.92 -66.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.843 kcal (2) G-P(sol) polarization free energy of solvation -68.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds