Wall clock time and date at job start Sat Apr 11 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86791 * 120.00287 * 2 1 4 4 H 1.48500 * 109.47376 * 179.72739 * 3 2 1 5 5 H 1.48504 * 109.47476 * 299.72789 * 3 2 1 6 6 H 1.48501 * 109.47448 * 59.72749 * 3 2 1 7 7 C 1.38814 * 119.99452 * 179.72772 * 2 1 3 8 8 H 1.08007 * 119.99337 * 162.42141 * 7 2 1 9 9 N 1.36934 * 120.00433 * 342.42105 * 7 2 1 10 10 C 1.46959 * 120.59471 * 151.57028 * 9 7 2 11 11 C 1.53811 * 108.39816 * 124.76003 * 10 9 7 12 12 N 1.46966 * 108.57993 * 49.63784 * 11 10 9 13 13 C 1.34780 * 120.59285 * 124.62633 * 12 11 10 14 14 O 1.21285 * 119.99577 * 180.02562 * 13 12 11 15 15 C 1.50692 * 120.00188 * 0.02562 * 13 12 11 16 16 H 1.09007 * 115.56088 * 34.25274 * 15 13 12 17 17 C 1.53136 * 117.51950 * 248.42673 * 15 13 12 18 18 C 1.52333 * 59.82995 * 252.55989 * 17 15 13 19 19 C 1.50787 * 121.76087 * 111.07995 * 18 17 15 20 20 O 1.21283 * 126.62045 * 323.77035 * 19 18 17 21 21 N 1.34603 * 106.76065 * 143.79611 * 19 18 17 22 22 C 1.39620 * 112.21884 * 359.97438 * 21 19 18 23 23 C 1.39328 * 130.80958 * 179.97438 * 22 21 19 24 24 C 1.37928 * 120.18300 * 179.97438 * 23 22 21 25 25 C 1.38309 * 120.35155 * 0.04333 * 24 23 22 26 26 C 1.38372 * 119.83011 * 359.97438 * 25 24 23 27 27 C 1.37681 * 119.98871 * 359.97438 * 26 25 24 28 28 C 1.46964 * 118.80786 * 304.64457 * 12 11 10 29 29 C 1.46966 * 120.59374 * 331.85158 * 9 7 2 30 30 H 0.97003 * 119.99285 * 0.27457 * 1 2 3 31 31 H 1.09004 * 109.61187 * 244.54200 * 10 9 7 32 32 H 1.08997 * 109.61402 * 5.05080 * 10 9 7 33 33 H 1.09003 * 109.74244 * 289.84510 * 11 10 9 34 34 H 1.09010 * 109.53077 * 169.30325 * 11 10 9 35 35 H 1.08998 * 117.51099 * 0.02562 * 17 15 13 36 36 H 1.09005 * 117.51809 * 145.11616 * 17 15 13 37 37 H 0.97003 * 123.89106 * 179.97438 * 21 19 18 38 38 H 1.07994 * 119.90765 * 359.97438 * 23 22 21 39 39 H 1.08005 * 119.82532 * 180.02562 * 24 23 22 40 40 H 1.07995 * 120.08319 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.00414 * 179.97438 * 26 25 24 42 42 H 1.08995 * 109.61287 * 295.47823 * 28 12 11 43 43 H 1.09004 * 109.74511 * 175.05402 * 28 12 11 44 44 H 1.09006 * 109.60550 * 354.94428 * 29 9 7 45 45 H 1.09000 * 109.60990 * 115.28232 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 0.0067 5 1 1.8966 2.3935 -1.2158 6 1 1.8866 2.3993 1.2091 7 6 2.0102 -1.2022 0.0057 8 1 3.0524 -1.2254 -0.2767 9 7 1.3735 -2.3587 0.3694 10 6 1.8090 -3.6541 -0.1710 11 6 2.1162 -4.5932 1.0077 12 7 0.9811 -4.5605 1.9406 13 6 0.3538 -5.6987 2.2978 14 8 -0.5822 -5.6592 3.0682 15 6 0.8153 -7.0204 1.7401 16 1 1.8883 -7.1101 1.5698 17 6 -0.1194 -7.7422 0.7653 18 6 0.0659 -8.2710 2.1818 19 6 -1.0428 -8.2128 3.2022 20 8 -1.8613 -7.3271 3.3314 21 7 -0.9485 -9.3331 3.9422 22 6 0.1080 -10.1490 3.5328 23 6 0.5511 -11.3773 4.0187 24 6 1.6358 -12.0018 3.4391 25 6 2.2927 -11.4149 2.3729 26 6 1.8593 -10.1949 1.8845 27 6 0.7762 -9.5690 2.4597 28 6 0.5420 -3.2645 2.4766 29 6 0.2383 -2.3260 1.3023 30 1 -0.4849 0.8401 -0.0040 31 1 1.0151 -4.0802 -0.7844 32 1 2.7064 -3.5158 -0.7741 33 1 3.0194 -4.2596 1.5187 34 1 2.2564 -5.6089 0.6375 35 1 -1.0678 -7.2607 0.5273 36 1 0.3386 -8.3068 -0.0470 37 1 -1.5457 -9.5488 4.6756 38 1 0.0439 -11.8417 4.8513 39 1 1.9742 -12.9541 3.8202 40 1 3.1418 -11.9075 1.9227 41 1 2.3704 -9.7339 1.0523 42 1 1.3330 -2.8363 3.0922 43 1 -0.3567 -3.4002 3.0783 44 1 0.0982 -1.3103 1.6724 45 1 -0.6654 -2.6568 0.7905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933236127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:00 Heat of formation + Delta-G solvation = 45.711802 kcal Electronic energy + Delta-G solvation = -29751.179102 eV Core-core repulsion = 25736.248970 eV Total energy + Delta-G solvation = -4014.930132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.87702 -39.58417 -38.38617 -36.99201 -36.01600 -35.51620 -33.83009 -31.20049 -31.11900 -30.30986 -29.41654 -27.12798 -26.04538 -24.46710 -23.40363 -22.80113 -22.42776 -21.70043 -20.74907 -19.77233 -18.40031 -17.88300 -17.65090 -16.63822 -16.21247 -15.93212 -15.55348 -15.34047 -14.78473 -14.76238 -14.61644 -14.32775 -14.16543 -14.00021 -13.63665 -13.38893 -13.24100 -13.19129 -12.85592 -12.45699 -12.27531 -12.21225 -11.76608 -11.50068 -11.30648 -11.11908 -10.94146 -10.80415 -10.75401 -10.63146 -10.52866 -10.23842 -10.13847 -9.93668 -9.78283 -9.14718 -8.99962 -8.57348 -8.16815 -8.15638 -6.69690 -5.83713 -3.28871 0.86405 1.02025 2.29349 2.82181 2.94565 3.33965 3.34658 3.42771 3.44564 3.52612 3.91851 4.05959 4.07611 4.26466 4.45249 4.63159 4.67339 4.73420 4.89302 5.01243 5.15470 5.19592 5.30823 5.32197 5.34504 5.44686 5.61107 5.72173 5.77516 5.79402 5.87295 5.92198 6.09300 6.17633 6.18708 6.37463 6.39858 6.41934 6.53655 6.70224 6.72934 6.82365 6.91865 7.29997 7.57901 7.73664 7.95692 8.08648 8.37371 8.68699 9.13055 9.76148 10.33035 11.23580 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025342 B = 0.002598 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.619573 B =10775.225376 C =11451.295925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.132 3.868 11 C 0.089 3.911 12 N -0.593 5.593 13 C 0.521 3.479 14 O -0.515 6.515 15 C -0.131 4.131 16 H 0.135 0.865 17 C -0.097 4.097 18 C -0.120 4.120 19 C 0.552 3.448 20 O -0.433 6.433 21 N -0.669 5.669 22 C 0.159 3.841 23 C -0.147 4.147 24 C -0.084 4.084 25 C -0.146 4.146 26 C -0.064 4.064 27 C -0.107 4.107 28 C 0.090 3.910 29 C 0.159 3.841 30 H 0.255 0.745 31 H 0.024 0.976 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.412 0.588 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.615 -25.136 4.517 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.004 3.996 11 C -0.036 4.036 12 N -0.326 5.326 13 C 0.307 3.693 14 O -0.390 6.390 15 C -0.152 4.152 16 H 0.153 0.847 17 C -0.135 4.135 18 C -0.124 4.124 19 C 0.337 3.663 20 O -0.300 6.300 21 N -0.314 5.314 22 C 0.060 3.940 23 C -0.168 4.168 24 C -0.103 4.103 25 C -0.165 4.165 26 C -0.082 4.082 27 C -0.110 4.110 28 C -0.033 4.033 29 C 0.032 3.968 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.250 0.750 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.505 -24.268 4.924 25.009 hybrid contribution 0.307 0.693 0.382 0.849 sum 3.812 -23.575 5.306 24.464 Atomic orbital electron populations 1.70041 1.05333 1.25631 1.53362 1.25094 0.95285 0.98605 1.00619 0.86214 0.79337 0.83809 0.77325 1.20212 1.21700 1.21481 1.19218 0.92785 0.84833 1.41770 0.91448 1.44026 1.36735 1.01426 1.49237 1.21357 0.98343 0.87411 0.92474 1.22479 0.88510 1.00190 0.92436 1.47966 1.32691 1.06510 1.45454 1.19524 0.83248 0.84205 0.82334 1.90896 1.27041 1.86096 1.35004 1.22226 0.99668 0.89834 1.03507 0.84692 1.22962 1.01612 0.99511 0.89387 1.20070 0.99479 0.93308 0.99592 1.19199 0.85071 0.80431 0.81629 1.90938 1.37288 1.33516 1.68242 1.43721 1.31105 1.20958 1.35575 1.18218 0.89001 0.92207 0.94535 1.20342 0.99797 0.93898 1.02807 1.20864 0.94394 0.99446 0.95598 1.21010 1.01330 0.95885 0.98281 1.20273 0.94233 0.94648 0.99054 1.19003 0.98374 0.95135 0.98490 1.22470 0.99795 0.82505 0.98547 1.21184 0.89021 0.98696 0.87864 0.93498 0.95815 0.91568 0.91695 0.90985 0.86660 0.86251 0.74981 0.85710 0.85334 0.85343 0.85423 0.92317 0.90134 0.88324 0.95841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 11.20 55.49 0.62 -25.33 16 2 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 3 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.26 -6.83 9.57 -15.06 -0.14 -6.97 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.45 2.96 -171.77 -0.51 -14.96 16 10 C 0.13 2.57 6.70 -3.37 -0.02 2.55 16 11 C 0.09 1.42 6.48 -3.37 -0.02 1.40 16 12 N -0.59 -11.00 2.95 -172.21 -0.51 -11.51 16 13 C 0.52 9.48 7.48 -10.99 -0.08 9.40 16 14 O -0.51 -11.27 11.77 -19.63 -0.23 -11.50 16 15 C -0.13 -1.74 4.86 -92.04 -0.45 -2.19 16 16 H 0.14 1.42 6.78 -51.92 -0.35 1.07 16 17 C -0.10 -1.12 9.99 -27.00 -0.27 -1.39 16 18 C -0.12 -1.56 2.42 -157.52 -0.38 -1.94 16 19 C 0.55 8.55 7.77 -11.02 -0.09 8.46 16 20 O -0.43 -8.58 14.48 -19.63 -0.28 -8.86 16 21 N -0.67 -7.85 5.90 -9.79 -0.06 -7.90 16 22 C 0.16 1.66 7.12 -83.59 -0.59 1.06 16 23 C -0.15 -1.16 10.07 -39.29 -0.40 -1.55 16 24 C -0.08 -0.56 10.02 -39.67 -0.40 -0.96 16 25 C -0.15 -0.99 10.07 -39.51 -0.40 -1.39 16 26 C -0.06 -0.52 10.03 -39.74 -0.40 -0.92 16 27 C -0.11 -1.14 6.12 -104.59 -0.64 -1.78 16 28 C 0.09 1.88 6.59 -3.60 -0.02 1.86 16 29 C 0.16 3.85 5.51 -3.60 -0.02 3.83 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.88 5.63 -51.92 -0.29 0.59 16 35 H 0.12 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.41 3.84 8.96 -40.82 -0.37 3.48 16 38 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.08 1.73 7.00 -51.93 -0.36 1.36 16 44 H 0.10 2.64 5.99 -51.93 -0.31 2.33 16 45 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -35.05 365.44 -10.77 -45.82 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.87 Total: 2.97 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -4.41 Total: 9.47 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.45 Total: -59.70 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.52 Total: -20.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.05 -10.77 -45.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.535 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds