Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00153 * 2 1 4 4 H 1.48508 * 109.47165 * 246.03275 * 3 2 1 5 5 H 1.48498 * 109.47075 * 6.03011 * 3 2 1 6 6 H 1.48494 * 109.47169 * 126.03425 * 3 2 1 7 7 C 1.38815 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00435 * 340.52011 * 7 2 1 9 9 N 1.36939 * 119.99978 * 160.52663 * 7 2 1 10 10 C 1.47026 * 125.64619 * 359.69077 * 9 7 2 11 11 C 1.54323 * 107.26984 * 181.02513 * 10 9 7 12 12 H 1.09004 * 110.72343 * 140.55112 * 11 10 9 13 13 O 1.42896 * 110.71926 * 263.64977 * 11 10 9 14 14 C 1.55161 * 102.94587 * 22.18929 * 11 10 9 15 15 H 1.08999 * 111.00117 * 82.61007 * 14 11 10 16 16 C 1.52998 * 111.00543 * 206.42629 * 14 11 10 17 17 N 1.46504 * 109.47066 * 184.99669 * 16 14 11 18 18 C 1.34772 * 119.99945 * 179.97438 * 17 16 14 19 19 O 1.21539 * 120.00014 * 0.02562 * 18 17 16 20 20 C 1.47907 * 119.99876 * 180.02562 * 18 17 16 21 21 C 1.38897 * 121.11207 * 5.86905 * 20 18 17 22 22 C 1.39273 * 119.57824 * 179.68701 * 21 20 18 23 23 N 1.30991 * 121.88089 * 0.66367 * 22 21 20 24 24 C 1.33535 * 121.82995 * 359.64175 * 23 22 21 25 25 C 1.40714 * 120.97044 * 180.02562 * 24 23 22 26 26 C 1.36054 * 119.74610 * 179.97438 * 25 24 23 27 27 C 1.39356 * 121.05015 * 359.95852 * 26 25 24 28 28 C 1.36247 * 120.84096 * 0.02562 * 27 26 25 29 29 C 1.40099 * 119.64414 * 359.97438 * 28 27 26 30 30 C 1.47422 * 125.65172 * 179.37791 * 9 7 2 31 31 H 0.97005 * 120.00105 * 185.01119 * 1 2 3 32 32 H 1.09004 * 109.88281 * 300.43640 * 10 9 7 33 33 H 1.08996 * 109.88723 * 61.45135 * 10 9 7 34 34 H 0.96700 * 113.99882 * 298.54494 * 13 11 10 35 35 H 1.08999 * 109.46764 * 304.99859 * 16 14 11 36 36 H 1.09000 * 109.46908 * 64.99760 * 16 14 11 37 37 H 0.97000 * 119.99637 * 0.02562 * 17 16 14 38 38 H 1.07999 * 120.21027 * 0.02562 * 21 20 18 39 39 H 1.07997 * 119.05515 * 180.28352 * 22 21 20 40 40 H 1.08006 * 120.12602 * 359.97438 * 25 24 23 41 41 H 1.07995 * 119.47672 * 179.97438 * 26 25 24 42 42 H 1.08000 * 119.57829 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.17656 * 179.97438 * 28 27 26 44 44 H 1.08998 * 110.37414 * 274.75003 * 30 9 7 45 45 H 1.09001 * 110.36486 * 37.06936 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.9903 1.7620 -1.2794 5 1 1.2919 2.7425 0.1471 6 1 3.2109 1.6345 1.1321 7 6 2.0102 -1.2022 -0.0005 8 1 1.5166 -2.1108 0.3109 9 7 3.3208 -1.2360 -0.3959 10 6 4.1095 -0.0805 -0.8480 11 6 5.5162 -0.6002 -1.2123 12 1 5.8908 -0.1039 -2.1076 13 8 6.4203 -0.4195 -0.1205 14 6 5.2704 -2.1081 -1.4827 15 1 4.9046 -2.2686 -2.4969 16 6 6.5377 -2.9254 -1.2242 17 7 6.3042 -4.3213 -1.6026 18 6 7.2882 -5.2314 -1.4614 19 8 8.3692 -4.8941 -1.0198 20 6 7.0527 -6.6406 -1.8438 21 6 5.8709 -7.0286 -2.4619 22 6 5.6853 -8.3631 -2.8143 23 7 6.5919 -9.2761 -2.5684 24 6 7.7487 -8.9772 -1.9721 25 6 8.7103 -9.9724 -1.7171 26 6 9.8808 -9.6400 -1.1085 27 6 10.1469 -8.3250 -0.7317 28 6 9.2398 -7.3350 -0.9627 29 6 8.0238 -7.6414 -1.5875 30 6 4.1766 -2.4359 -0.4326 31 1 -0.4850 -0.8369 0.0734 32 1 3.6415 0.3677 -1.7245 33 1 4.1797 0.6564 -0.0479 34 1 6.5474 0.5041 0.1361 35 1 7.3581 -2.5206 -1.8169 36 1 6.7938 -2.8737 -0.1660 37 1 5.4417 -4.5904 -1.9553 38 1 5.1030 -6.2990 -2.6728 39 1 4.7651 -8.6547 -3.2986 40 1 8.5199 -10.9962 -2.0035 41 1 10.6156 -10.4073 -0.9146 42 1 11.0838 -8.0877 -0.2496 43 1 9.4569 -6.3196 -0.6658 44 1 4.6261 -2.6114 0.5447 45 1 3.5982 -3.3048 -0.7465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958232384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = 19.357952 kcal Electronic energy + Delta-G solvation = -28830.408256 eV Core-core repulsion = 24814.335335 eV Total energy + Delta-G solvation = -4016.072921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.38039 -39.67576 -38.68343 -37.39039 -35.32019 -34.95586 -33.76398 -32.39611 -30.91802 -30.71539 -29.87574 -28.24389 -26.31847 -24.94475 -23.87364 -23.44733 -22.53533 -21.27887 -20.72089 -19.97792 -18.47493 -17.91185 -17.90691 -17.62213 -16.84703 -16.05266 -15.80102 -15.61764 -15.42228 -15.02928 -14.72030 -14.54726 -14.42326 -14.17436 -13.91724 -13.68720 -13.43859 -13.36832 -13.19643 -12.83266 -12.47634 -12.17846 -12.08606 -11.93470 -11.66465 -11.25784 -11.21444 -10.96640 -10.78676 -10.66765 -10.50690 -10.12051 -10.02579 -9.52909 -9.44571 -9.22921 -9.11566 -9.03446 -8.70692 -8.54253 -7.13430 -6.38997 -3.25977 -0.20725 0.47905 1.44115 2.50076 2.81736 2.90483 3.26581 3.40043 3.60962 3.84025 3.92908 4.20111 4.28647 4.33651 4.41472 4.52232 4.53917 4.67878 4.80170 4.89713 4.97528 5.02620 5.03983 5.08939 5.21962 5.29256 5.39295 5.44691 5.50078 5.63103 5.68671 5.72880 5.80373 5.99207 6.01534 6.02021 6.15071 6.20996 6.24723 6.32778 6.38297 6.45721 6.58110 6.66086 7.23776 7.52804 7.54879 7.81311 7.93981 8.24797 8.96893 9.49476 10.14659 11.12226 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020927 B = 0.002401 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.680023 B =11659.081497 C =12637.398929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.026 4.026 3 Si 1.073 2.927 4 H -0.284 1.284 5 H -0.300 1.300 6 H -0.298 1.298 7 C -0.326 4.326 8 H 0.080 0.920 9 N -0.609 5.609 10 C 0.072 3.928 11 C 0.103 3.897 12 H 0.068 0.932 13 O -0.559 6.559 14 C -0.111 4.111 15 H 0.095 0.905 16 C 0.140 3.860 17 N -0.714 5.714 18 C 0.559 3.441 19 O -0.527 6.527 20 C -0.068 4.068 21 C -0.138 4.138 22 C 0.127 3.873 23 N -0.459 5.459 24 C 0.123 3.877 25 C -0.100 4.100 26 C -0.098 4.098 27 C -0.119 4.119 28 C -0.100 4.100 29 C -0.066 4.066 30 C 0.146 3.854 31 H 0.262 0.738 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.378 0.622 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.402 0.598 38 H 0.144 0.856 39 H 0.167 0.833 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.169 0.831 44 H 0.030 0.970 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.343 -14.767 -6.550 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.226 4.226 3 Si 0.907 3.093 4 H -0.211 1.211 5 H -0.229 1.229 6 H -0.227 1.227 7 C -0.453 4.453 8 H 0.098 0.902 9 N -0.337 5.337 10 C -0.053 4.053 11 C 0.043 3.957 12 H 0.085 0.915 13 O -0.365 6.365 14 C -0.131 4.131 15 H 0.113 0.887 16 C 0.017 3.983 17 N -0.365 5.365 18 C 0.345 3.655 19 O -0.405 6.405 20 C -0.080 4.080 21 C -0.159 4.159 22 C -0.045 4.045 23 N -0.168 5.168 24 C 0.001 3.999 25 C -0.118 4.118 26 C -0.118 4.118 27 C -0.137 4.137 28 C -0.118 4.118 29 C -0.069 4.069 30 C 0.020 3.980 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.226 0.774 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.237 0.763 38 H 0.162 0.838 39 H 0.185 0.815 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.186 0.814 44 H 0.047 0.953 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.767 -14.403 -6.495 24.532 hybrid contribution -0.351 -0.340 0.262 0.555 sum 18.415 -14.744 -6.234 24.400 Atomic orbital electron populations 1.70919 1.05570 1.29740 1.50473 1.25764 0.96474 1.00977 0.99356 0.83853 0.73415 0.75962 0.76075 1.21119 1.22857 1.22724 1.20132 0.84001 0.96776 1.44387 0.90248 1.44752 1.09100 1.01776 1.78050 1.22889 0.91362 0.92493 0.98575 1.22707 0.89130 0.95080 0.88797 0.91462 1.86438 1.65414 1.31783 1.52851 1.22775 0.95514 0.93632 1.01149 0.88656 1.21243 0.97014 0.77996 1.02057 1.46025 1.15590 1.09831 1.65099 1.18011 0.84389 0.84538 0.78521 1.90598 1.24296 1.80178 1.45428 1.20392 0.94767 0.93680 0.99135 1.22493 0.96864 0.98530 0.98011 1.22936 0.97839 0.88398 0.95343 1.67808 1.01152 1.36864 1.10942 1.18902 0.92651 0.91417 0.96880 1.20783 0.92641 0.98811 0.99580 1.21004 0.96806 0.96854 0.97096 1.21121 1.00009 0.92731 0.99873 1.22082 0.91582 1.02656 0.95460 1.18680 0.95506 0.92898 0.99790 1.21635 0.90199 0.91005 0.95184 0.92815 0.92336 0.94359 0.77411 0.91072 0.89814 0.76263 0.83786 0.81544 0.84602 0.85231 0.85321 0.81365 0.95258 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.58 13.70 55.49 0.76 -27.82 16 2 C -0.03 -0.76 5.49 -17.43 -0.10 -0.85 16 3 Si 1.07 25.85 24.53 -169.99 -4.17 21.68 16 4 H -0.28 -6.07 5.22 56.52 0.30 -5.78 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.30 -6.94 6.70 56.52 0.38 -6.57 16 7 C -0.33 -9.10 10.55 -15.06 -0.16 -9.25 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 9 N -0.61 -14.28 3.37 -169.93 -0.57 -14.85 16 10 C 0.07 1.46 4.38 -3.06 -0.01 1.44 16 11 C 0.10 1.58 4.07 -24.89 -0.10 1.48 16 12 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 13 O -0.56 -8.27 12.27 -35.23 -0.43 -8.70 16 14 C -0.11 -1.62 2.99 -88.35 -0.26 -1.88 16 15 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 16 C 0.14 1.86 4.60 -4.04 -0.02 1.84 16 17 N -0.71 -8.30 5.46 -61.23 -0.33 -8.64 16 18 C 0.56 7.25 7.75 -12.30 -0.10 7.16 16 19 O -0.53 -8.16 13.53 5.33 0.07 -8.08 16 20 C -0.07 -0.80 5.94 -104.34 -0.62 -1.42 16 21 C -0.14 -1.26 9.60 -38.95 -0.37 -1.63 16 22 C 0.13 1.15 11.14 -17.53 -0.20 0.96 16 23 N -0.46 -5.23 10.30 -11.01 -0.11 -5.35 16 24 C 0.12 1.46 6.61 -84.87 -0.56 0.90 16 25 C -0.10 -0.97 9.98 -39.43 -0.39 -1.36 16 26 C -0.10 -0.81 9.94 -39.95 -0.40 -1.21 16 27 C -0.12 -1.11 9.96 -39.88 -0.40 -1.51 16 28 C -0.10 -1.18 9.25 -39.60 -0.37 -1.55 16 29 C -0.07 -0.82 5.76 -106.52 -0.61 -1.43 16 30 C 0.15 2.74 6.65 -2.41 -0.02 2.72 16 31 H 0.26 7.99 8.73 -40.82 -0.36 7.63 16 32 H 0.06 1.23 5.95 -51.93 -0.31 0.92 16 33 H 0.04 0.82 4.38 -51.93 -0.23 0.59 16 34 H 0.38 4.18 9.10 45.56 0.41 4.60 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.30 7.55 -51.93 -0.39 0.90 16 37 H 0.40 3.81 6.65 -40.82 -0.27 3.53 16 38 H 0.14 0.90 6.55 -52.49 -0.34 0.56 16 39 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.17 2.20 4.99 -52.49 -0.26 1.93 16 44 H 0.03 0.59 7.91 -51.93 -0.41 0.18 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -35.58 361.53 -8.91 -44.49 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.89 Total: 7.42 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -4.68 Total: -5.60 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.26 Total: -56.66 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.36 Total: -16.78 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -4.17 Total: 21.68 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.58 -8.91 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958232384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.847 kcal (2) G-P(sol) polarization free energy of solvation -35.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds