Wall clock time and date at job start Sat Apr 11 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00153 * 2 1 4 4 H 1.48508 * 109.47165 * 246.03275 * 3 2 1 5 5 H 1.48498 * 109.47075 * 6.03011 * 3 2 1 6 6 H 1.48494 * 109.47169 * 126.03425 * 3 2 1 7 7 C 1.38815 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00435 * 340.52011 * 7 2 1 9 9 N 1.36939 * 119.99978 * 160.52663 * 7 2 1 10 10 C 1.47026 * 125.64619 * 359.69077 * 9 7 2 11 11 C 1.54323 * 107.26984 * 181.02513 * 10 9 7 12 12 H 1.09004 * 110.72343 * 140.55112 * 11 10 9 13 13 O 1.42896 * 110.71926 * 263.64977 * 11 10 9 14 14 C 1.55161 * 102.94587 * 22.18929 * 11 10 9 15 15 H 1.08999 * 111.00117 * 82.61007 * 14 11 10 16 16 C 1.52998 * 111.00543 * 206.42629 * 14 11 10 17 17 N 1.46504 * 109.47066 * 184.99669 * 16 14 11 18 18 C 1.34772 * 119.99945 * 179.97438 * 17 16 14 19 19 O 1.21539 * 120.00014 * 0.02562 * 18 17 16 20 20 C 1.47907 * 119.99876 * 180.02562 * 18 17 16 21 21 C 1.38897 * 121.11207 * 5.86905 * 20 18 17 22 22 C 1.39273 * 119.57824 * 179.68701 * 21 20 18 23 23 N 1.30991 * 121.88089 * 0.66367 * 22 21 20 24 24 C 1.33535 * 121.82995 * 359.64175 * 23 22 21 25 25 C 1.40714 * 120.97044 * 180.02562 * 24 23 22 26 26 C 1.36054 * 119.74610 * 179.97438 * 25 24 23 27 27 C 1.39356 * 121.05015 * 359.95852 * 26 25 24 28 28 C 1.36247 * 120.84096 * 0.02562 * 27 26 25 29 29 C 1.40099 * 119.64414 * 359.97438 * 28 27 26 30 30 C 1.47422 * 125.65172 * 179.37791 * 9 7 2 31 31 H 0.97005 * 120.00105 * 185.01119 * 1 2 3 32 32 H 1.09004 * 109.88281 * 300.43640 * 10 9 7 33 33 H 1.08996 * 109.88723 * 61.45135 * 10 9 7 34 34 H 0.96700 * 113.99882 * 298.54494 * 13 11 10 35 35 H 1.08999 * 109.46764 * 304.99859 * 16 14 11 36 36 H 1.09000 * 109.46908 * 64.99760 * 16 14 11 37 37 H 0.97000 * 119.99637 * 0.02562 * 17 16 14 38 38 H 1.07999 * 120.21027 * 0.02562 * 21 20 18 39 39 H 1.07997 * 119.05515 * 180.28352 * 22 21 20 40 40 H 1.08006 * 120.12602 * 359.97438 * 25 24 23 41 41 H 1.07995 * 119.47672 * 179.97438 * 26 25 24 42 42 H 1.08000 * 119.57829 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.17656 * 179.97438 * 28 27 26 44 44 H 1.08998 * 110.37414 * 274.75003 * 30 9 7 45 45 H 1.09001 * 110.36486 * 37.06936 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.9903 1.7620 -1.2794 5 1 1.2919 2.7425 0.1471 6 1 3.2109 1.6345 1.1321 7 6 2.0102 -1.2022 -0.0005 8 1 1.5166 -2.1108 0.3109 9 7 3.3208 -1.2360 -0.3959 10 6 4.1095 -0.0805 -0.8480 11 6 5.5162 -0.6002 -1.2123 12 1 5.8908 -0.1039 -2.1076 13 8 6.4203 -0.4195 -0.1205 14 6 5.2704 -2.1081 -1.4827 15 1 4.9046 -2.2686 -2.4969 16 6 6.5377 -2.9254 -1.2242 17 7 6.3042 -4.3213 -1.6026 18 6 7.2882 -5.2314 -1.4614 19 8 8.3692 -4.8941 -1.0198 20 6 7.0527 -6.6406 -1.8438 21 6 5.8709 -7.0286 -2.4619 22 6 5.6853 -8.3631 -2.8143 23 7 6.5919 -9.2761 -2.5684 24 6 7.7487 -8.9772 -1.9721 25 6 8.7103 -9.9724 -1.7171 26 6 9.8808 -9.6400 -1.1085 27 6 10.1469 -8.3250 -0.7317 28 6 9.2398 -7.3350 -0.9627 29 6 8.0238 -7.6414 -1.5875 30 6 4.1766 -2.4359 -0.4326 31 1 -0.4850 -0.8369 0.0734 32 1 3.6415 0.3677 -1.7245 33 1 4.1797 0.6564 -0.0479 34 1 6.5474 0.5041 0.1361 35 1 7.3581 -2.5206 -1.8169 36 1 6.7938 -2.8737 -0.1660 37 1 5.4417 -4.5904 -1.9553 38 1 5.1030 -6.2990 -2.6728 39 1 4.7651 -8.6547 -3.2986 40 1 8.5199 -10.9962 -2.0035 41 1 10.6156 -10.4073 -0.9146 42 1 11.0838 -8.0877 -0.2496 43 1 9.4569 -6.3196 -0.6658 44 1 4.6261 -2.6114 0.5447 45 1 3.5982 -3.3048 -0.7465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958232384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:17 Heat of formation + Delta-G solvation = -8.928203 kcal Electronic energy + Delta-G solvation = -28831.634836 eV Core-core repulsion = 24814.335335 eV Total energy + Delta-G solvation = -4017.299500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.18738 -40.73601 -39.94085 -38.11809 -36.56630 -36.29586 -34.63269 -34.18394 -32.12162 -31.55195 -30.87563 -29.73747 -27.65141 -26.06867 -24.79956 -24.55819 -23.49187 -22.77770 -21.88827 -21.25035 -19.77040 -19.22271 -18.77724 -18.50129 -18.14346 -17.27763 -17.00260 -16.55507 -16.46349 -15.92815 -15.78978 -15.68579 -15.53984 -15.36961 -15.14313 -14.87595 -14.71202 -14.52499 -14.15539 -14.13755 -14.00111 -13.55076 -13.09213 -12.81664 -12.71090 -12.54366 -12.37431 -12.29087 -12.15214 -11.80014 -11.65313 -11.58971 -11.45627 -11.15251 -10.87510 -10.57641 -10.38105 -10.25623 -9.83985 -9.31852 -9.12137 -8.65811 -5.44112 -0.99212 -0.25579 0.63750 1.35439 1.50474 1.68427 1.70612 1.87380 2.06028 2.53797 3.04387 3.06187 3.20414 3.24735 3.27799 3.39395 3.59480 3.64186 3.67838 3.74166 3.82949 3.88418 4.15149 4.19854 4.26695 4.32838 4.39108 4.51166 4.52146 4.56078 4.62692 4.72565 4.73365 4.83156 4.89584 5.01638 5.03746 5.07626 5.23170 5.32177 5.32634 5.46513 5.50668 5.54124 5.86100 6.07607 6.31597 6.77227 6.81700 6.86720 6.99453 7.44507 8.08376 8.87113 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020927 B = 0.002401 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.680023 B =11659.081497 C =12637.398929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.087 4.087 3 Si 1.109 2.891 4 H -0.235 1.235 5 H -0.316 1.316 6 H -0.288 1.288 7 C -0.314 4.314 8 H 0.046 0.954 9 N -0.630 5.630 10 C 0.060 3.940 11 C 0.113 3.887 12 H 0.110 0.890 13 O -0.569 6.569 14 C -0.094 4.094 15 H 0.120 0.880 16 C 0.153 3.847 17 N -0.706 5.706 18 C 0.559 3.441 19 O -0.557 6.557 20 C -0.093 4.093 21 C -0.123 4.123 22 C 0.124 3.876 23 N -0.476 5.476 24 C 0.100 3.900 25 C -0.107 4.107 26 C -0.093 4.093 27 C -0.112 4.112 28 C -0.129 4.129 29 C -0.086 4.086 30 C 0.141 3.859 31 H 0.246 0.754 32 H 0.057 0.943 33 H 0.034 0.966 34 H 0.396 0.604 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.413 0.587 38 H 0.174 0.826 39 H 0.202 0.798 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.014 0.986 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.624 -15.175 -8.255 26.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.279 4.279 3 Si 0.937 3.063 4 H -0.159 1.159 5 H -0.246 1.246 6 H -0.216 1.216 7 C -0.442 4.442 8 H 0.064 0.936 9 N -0.358 5.358 10 C -0.065 4.065 11 C 0.053 3.947 12 H 0.128 0.872 13 O -0.378 6.378 14 C -0.113 4.113 15 H 0.138 0.862 16 C 0.030 3.970 17 N -0.358 5.358 18 C 0.347 3.653 19 O -0.438 6.438 20 C -0.104 4.104 21 C -0.144 4.144 22 C -0.048 4.048 23 N -0.184 5.184 24 C -0.021 4.021 25 C -0.126 4.126 26 C -0.112 4.112 27 C -0.130 4.130 28 C -0.147 4.147 29 C -0.089 4.089 30 C 0.016 3.984 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.246 0.754 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.251 0.749 38 H 0.191 0.809 39 H 0.219 0.781 40 H 0.170 0.830 41 H 0.183 0.817 42 H 0.169 0.831 43 H 0.168 0.832 44 H 0.032 0.968 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 21.091 -14.844 -8.220 27.070 hybrid contribution -1.066 -0.375 0.863 1.422 sum 20.025 -15.219 -7.356 26.206 Atomic orbital electron populations 1.71039 1.06954 1.28872 1.53897 1.27137 0.96468 1.04716 0.99604 0.83479 0.72685 0.71454 0.78727 1.15913 1.24559 1.21620 1.20030 0.86324 0.95403 1.42467 0.93586 1.44840 1.08347 1.04732 1.77902 1.23125 0.93824 0.91559 0.97960 1.22718 0.86496 0.95173 0.90276 0.87231 1.86429 1.64701 1.33652 1.52986 1.22687 0.94226 0.93710 1.00718 0.86240 1.20989 0.96523 0.78634 1.00873 1.45891 1.15939 1.09142 1.64782 1.18232 0.84019 0.85177 0.77891 1.90590 1.25570 1.80780 1.46827 1.20376 0.96092 0.92840 1.01073 1.22835 0.96282 0.99288 0.95990 1.23561 0.98477 0.88104 0.94674 1.67857 1.01475 1.37730 1.11359 1.19219 0.93509 0.91681 0.97694 1.21104 0.92729 0.99215 0.99517 1.21364 0.96989 0.97095 0.95771 1.21449 1.00155 0.92770 0.98655 1.22026 0.92678 1.02598 0.97421 1.18888 0.96005 0.93560 1.00445 1.21766 0.90893 0.89733 0.96017 0.94462 0.92560 0.94824 0.75410 0.90023 0.92148 0.74922 0.80910 0.78104 0.83046 0.81739 0.83089 0.83163 0.96793 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.42 13.70 21.65 0.30 -61.12 16 2 C -0.09 -5.10 5.49 84.86 0.47 -4.63 16 3 Si 1.11 51.47 24.53 68.60 1.68 53.15 16 4 H -0.23 -9.04 5.22 99.48 0.52 -8.52 16 5 H -0.32 -15.39 7.11 99.48 0.71 -14.69 16 6 H -0.29 -12.72 6.70 99.48 0.67 -12.05 16 7 C -0.31 -17.83 10.55 84.03 0.89 -16.94 16 8 H 0.05 2.84 8.06 -2.91 -0.02 2.82 16 9 N -0.63 -28.97 3.37 -691.54 -2.33 -31.30 16 10 C 0.06 2.24 4.38 86.73 0.38 2.62 16 11 C 0.11 3.03 4.07 31.78 0.13 3.16 16 12 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 13 O -0.57 -14.97 12.27 -148.98 -1.83 -16.80 16 14 C -0.09 -2.45 2.99 -9.32 -0.03 -2.48 16 15 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 16 C 0.15 3.74 4.60 86.38 0.40 4.14 16 17 N -0.71 -15.23 5.46 -465.92 -2.54 -17.77 16 18 C 0.56 14.27 7.75 86.81 0.67 14.94 16 19 O -0.56 -17.50 13.53 -3.84 -0.05 -17.56 16 20 C -0.09 -2.12 5.94 -19.68 -0.12 -2.24 16 21 C -0.12 -2.02 9.60 22.68 0.22 -1.81 16 22 C 0.12 2.00 11.14 85.07 0.95 2.95 16 23 N -0.48 -10.27 10.30 -188.73 -1.94 -12.22 16 24 C 0.10 2.31 6.61 40.35 0.27 2.58 16 25 C -0.11 -1.94 9.98 22.37 0.22 -1.72 16 26 C -0.09 -1.36 9.94 22.03 0.22 -1.14 16 27 C -0.11 -1.99 9.96 22.07 0.22 -1.77 16 28 C -0.13 -3.11 9.25 22.26 0.21 -2.91 16 29 C -0.09 -2.15 5.76 -21.09 -0.12 -2.27 16 30 C 0.14 5.13 6.65 86.93 0.58 5.71 16 31 H 0.25 15.80 8.73 -92.70 -0.81 14.99 16 32 H 0.06 2.15 5.95 -2.38 -0.01 2.14 16 33 H 0.03 1.33 4.38 -2.39 -0.01 1.32 16 34 H 0.40 7.31 9.10 -74.06 -0.67 6.64 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.80 7.55 -2.39 -0.02 1.78 16 37 H 0.41 6.84 6.65 -92.71 -0.62 6.22 16 38 H 0.17 1.66 6.55 -2.91 -0.02 1.64 16 39 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 43 H 0.15 4.14 4.99 -2.91 -0.01 4.13 16 44 H 0.01 0.56 7.91 -2.39 -0.02 0.54 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -81.82 361.53 -1.67 -83.49 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -0.50 Total: 21.93 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 5.54 Total: -1.80 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -6.52 Total: -122.41 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -1.88 Total: -34.35 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 1.68 Total: 53.15 kcal Total: -81.82 -1.67 -83.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958232384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.561 kcal (2) G-P(sol) polarization free energy of solvation -81.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds