Wall clock time and date at job start Sat Apr 11 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00104 * 2 1 4 4 H 1.48499 * 109.46972 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47209 * 300.00643 * 3 2 1 6 6 H 1.48509 * 109.46727 * 60.00614 * 3 2 1 7 7 C 1.38809 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99880 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00348 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.65158 * 180.02562 * 9 7 2 11 11 C 1.54913 * 104.92802 * 204.15214 * 10 9 7 12 12 H 1.08997 * 111.00361 * 81.04397 * 11 10 9 13 13 C 1.52997 * 111.00200 * 204.85802 * 11 10 9 14 14 N 1.46494 * 109.47237 * 293.54181 * 13 11 10 15 15 C 1.34779 * 120.00362 * 179.97438 * 14 13 11 16 16 O 1.21546 * 119.99398 * 0.02562 * 15 14 13 17 17 C 1.47898 * 120.00467 * 180.02562 * 15 14 13 18 18 C 1.38894 * 121.10892 * 354.16850 * 17 15 14 19 19 C 1.39280 * 119.58003 * 179.68504 * 18 17 15 20 20 N 1.30998 * 121.87629 * 0.66214 * 19 18 17 21 21 C 1.33531 * 121.83126 * 359.64370 * 20 19 18 22 22 C 1.40709 * 120.96974 * 180.02562 * 21 20 19 23 23 C 1.36062 * 119.74721 * 179.97438 * 22 21 20 24 24 C 1.39353 * 121.04810 * 0.04236 * 23 22 21 25 25 C 1.36248 * 120.84093 * 359.97438 * 24 23 22 26 26 C 1.40101 * 119.64542 * 359.97438 * 25 24 23 27 27 C 1.55160 * 101.58129 * 322.93210 * 11 10 9 28 28 H 1.09004 * 110.71980 * 276.96470 * 27 11 10 29 29 O 1.42897 * 110.72068 * 153.86754 * 27 11 10 30 30 C 1.47299 * 125.79231 * 359.97438 * 9 7 2 31 31 H 0.97006 * 119.99500 * 359.97438 * 1 2 3 32 32 H 1.08995 * 110.36785 * 85.25584 * 10 9 7 33 33 H 1.09001 * 110.36270 * 323.04041 * 10 9 7 34 34 H 1.09006 * 109.47158 * 53.54734 * 13 11 10 35 35 H 1.09006 * 109.47133 * 173.54527 * 13 11 10 36 36 H 0.96999 * 120.00359 * 0.02562 * 14 13 11 37 37 H 1.07993 * 120.21252 * 0.02562 * 18 17 15 38 38 H 1.07995 * 119.05811 * 180.28228 * 19 18 17 39 39 H 1.08003 * 120.12946 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.47788 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.57883 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.17813 * 180.02562 * 25 24 23 43 43 H 0.96704 * 114.00020 * 180.02562 * 29 27 11 44 44 H 1.08995 * 109.85454 * 59.50411 * 30 9 7 45 45 H 1.08997 * 110.00330 * 298.43591 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2127 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.9334 -3.7311 -0.0005 11 6 0.8536 -4.6578 -0.6130 12 1 0.8590 -4.5979 -1.7013 13 6 1.0414 -6.1024 -0.1453 14 7 2.2935 -6.6331 -0.6899 15 6 2.6691 -7.8965 -0.4082 16 8 1.9685 -8.5956 0.2974 17 6 3.9335 -8.4322 -0.9575 18 6 4.6912 -7.6983 -1.8610 19 6 5.8804 -8.2309 -2.3532 20 7 6.3058 -9.4180 -1.9985 21 6 5.6266 -10.1818 -1.1392 22 6 6.1008 -11.4542 -0.7703 23 6 5.3889 -12.2114 0.1078 24 6 4.1920 -11.7481 0.6507 25 6 3.7019 -10.5215 0.3164 26 6 4.4095 -9.7145 -0.5841 27 6 -0.4479 -4.0486 -0.0280 28 1 -0.6321 -4.4258 0.9780 29 8 -1.5618 -4.3221 -0.8803 30 6 -0.1399 -2.5367 0.0005 31 1 -0.4850 0.8401 0.0004 32 1 2.1668 -4.0419 1.0178 33 1 2.8337 -3.7400 -0.6150 34 1 1.0783 -6.1299 0.9438 35 1 0.2066 -6.7093 -0.4960 36 1 2.8528 -6.0751 -1.2527 37 1 4.3633 -6.7187 -2.1758 38 1 6.4652 -7.6511 -3.0518 39 1 7.0263 -11.8283 -1.1825 40 1 5.7570 -13.1872 0.3883 41 1 3.6459 -12.3691 1.3453 42 1 2.7734 -10.1729 0.7439 43 1 -2.4001 -3.9623 -0.5597 44 1 -0.5614 -2.0561 -0.8823 45 1 -0.5594 -2.0895 0.9017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958232386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:25 Heat of formation + Delta-G solvation = 6.125956 kcal Electronic energy + Delta-G solvation = -28639.992201 eV Core-core repulsion = 24623.345498 eV Total energy + Delta-G solvation = -4016.646703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.34888 -39.58412 -38.26805 -37.36152 -35.31719 -34.79597 -33.73072 -32.31597 -30.83534 -30.51004 -29.55358 -27.68026 -26.01295 -25.02218 -23.86995 -23.62348 -22.56959 -21.08788 -20.34379 -19.95084 -18.43092 -17.87947 -17.61951 -17.01096 -16.72507 -15.96254 -15.74934 -15.54495 -15.14879 -14.95679 -14.62065 -14.57902 -14.16712 -14.13608 -13.89245 -13.42487 -13.34065 -13.21927 -12.73177 -12.51048 -12.11615 -12.05900 -11.89887 -11.65402 -11.54325 -11.29967 -11.07625 -10.88651 -10.74472 -10.65260 -10.53357 -10.09134 -9.95308 -9.89115 -9.50461 -9.29446 -9.18484 -9.08725 -8.73010 -8.51505 -6.97372 -5.82327 -3.17001 -0.17753 0.50791 1.46871 2.53018 2.86593 2.93207 3.33519 3.39062 3.41588 3.86903 3.95710 4.24714 4.33854 4.38972 4.44425 4.56734 4.64970 4.81813 4.88809 4.96468 5.05338 5.10348 5.24903 5.31876 5.35051 5.42844 5.48672 5.58415 5.74691 5.76240 5.80613 5.91384 5.94916 6.04547 6.10829 6.17824 6.24500 6.26860 6.36364 6.43952 6.60886 6.72170 7.28943 7.31550 7.42420 7.55627 7.68105 7.97304 8.11329 8.12605 9.08678 9.69512 10.33468 11.29532 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.002367 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.691215 B =11828.797138 C =12973.511722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.141 3.859 11 C -0.109 4.109 12 H 0.091 0.909 13 C 0.133 3.867 14 N -0.711 5.711 15 C 0.559 3.441 16 O -0.529 6.529 17 C -0.068 4.068 18 C -0.138 4.138 19 C 0.127 3.873 20 N -0.460 5.460 21 C 0.123 3.877 22 C -0.100 4.100 23 C -0.098 4.098 24 C -0.120 4.120 25 C -0.100 4.100 26 C -0.066 4.066 27 C 0.084 3.916 28 H 0.057 0.943 29 O -0.567 6.567 30 C 0.151 3.849 31 H 0.253 0.747 32 H 0.023 0.977 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.403 0.597 37 H 0.145 0.855 38 H 0.168 0.832 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.170 0.830 43 H 0.377 0.623 44 H 0.058 0.942 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.372 -20.533 -1.995 21.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.098 0.902 9 N -0.329 5.329 10 C 0.014 3.986 11 C -0.129 4.129 12 H 0.109 0.891 13 C 0.009 3.991 14 N -0.361 5.361 15 C 0.345 3.655 16 O -0.407 6.407 17 C -0.079 4.079 18 C -0.158 4.158 19 C -0.045 4.045 20 N -0.168 5.168 21 C 0.001 3.999 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.138 4.138 25 C -0.118 4.118 26 C -0.069 4.069 27 C 0.024 3.976 28 H 0.075 0.925 29 O -0.372 6.372 30 C 0.026 3.974 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.239 0.761 37 H 0.163 0.837 38 H 0.185 0.815 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.187 0.813 43 H 0.224 0.776 44 H 0.077 0.923 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.031 -21.483 -2.122 23.033 hybrid contribution -0.450 1.960 0.343 2.040 sum 7.581 -19.523 -1.779 21.019 Atomic orbital electron populations 1.69948 1.04953 1.25124 1.56878 1.24827 0.95768 0.97828 1.01970 0.86018 0.78715 0.83546 0.77303 1.20435 1.21665 1.21678 1.19098 0.90471 0.82170 1.44135 0.90169 1.44364 1.01279 0.99894 1.87381 1.21609 0.93998 0.85900 0.97060 1.22626 0.96364 0.92136 1.01761 0.89112 1.21469 0.84841 0.93891 0.98864 1.45965 1.24901 1.13194 1.52075 1.18023 0.84767 0.81978 0.80703 1.90590 1.54428 1.57567 1.38162 1.20383 0.95351 0.94555 0.97649 1.22505 0.95774 1.00920 0.96647 1.22939 0.93216 0.91460 0.96874 1.67808 1.32277 1.05582 1.11148 1.18897 0.91288 0.95068 0.94611 1.20779 1.00594 0.92101 0.98353 1.21002 0.94835 0.99865 0.96088 1.21116 0.96113 0.96493 1.00056 1.22089 1.01150 0.93386 0.95141 1.18679 0.95744 0.93857 0.98580 1.23112 0.85047 0.97890 0.91596 0.92484 1.86419 1.18861 1.80135 1.51738 1.21870 0.85181 0.88470 1.01892 0.93675 0.95890 0.93995 0.90951 0.90733 0.76112 0.83724 0.81538 0.84624 0.85258 0.85345 0.81346 0.77625 0.92341 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.23 10.34 55.49 0.57 -25.65 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.23 -6.17 10.28 -15.06 -0.15 -6.32 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -14.56 3.40 -169.85 -0.58 -15.14 16 10 C 0.14 2.63 6.40 -2.53 -0.02 2.62 16 11 C -0.11 -1.76 2.83 -88.47 -0.25 -2.01 16 12 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 13 C 0.13 1.83 5.12 -4.05 -0.02 1.81 16 14 N -0.71 -8.61 5.36 -61.23 -0.33 -8.94 16 15 C 0.56 7.39 7.75 -12.30 -0.10 7.30 16 16 O -0.53 -8.25 13.52 5.33 0.07 -8.17 16 17 C -0.07 -0.81 5.94 -104.34 -0.62 -1.43 16 18 C -0.14 -1.28 9.60 -38.95 -0.37 -1.66 16 19 C 0.13 1.17 11.14 -17.52 -0.20 0.98 16 20 N -0.46 -5.29 10.30 -11.00 -0.11 -5.40 16 21 C 0.12 1.47 6.61 -84.87 -0.56 0.91 16 22 C -0.10 -0.98 9.98 -39.43 -0.39 -1.37 16 23 C -0.10 -0.82 9.94 -39.95 -0.40 -1.22 16 24 C -0.12 -1.13 9.96 -39.88 -0.40 -1.52 16 25 C -0.10 -1.19 9.25 -39.60 -0.37 -1.55 16 26 C -0.07 -0.83 5.76 -106.52 -0.61 -1.44 16 27 C 0.08 1.48 3.80 -24.89 -0.09 1.39 16 28 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 29 O -0.57 -9.37 13.39 -35.23 -0.47 -9.84 16 30 C 0.15 3.47 5.16 -2.91 -0.02 3.45 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.40 4.08 6.51 -40.82 -0.27 3.82 16 37 H 0.15 0.96 6.55 -52.49 -0.34 0.61 16 38 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 41 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.17 2.21 4.98 -52.49 -0.26 1.95 16 43 H 0.38 4.80 9.12 45.56 0.42 5.22 16 44 H 0.06 1.52 7.30 -51.93 -0.38 1.14 16 45 H 0.05 1.16 7.52 -51.93 -0.39 0.77 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -33.46 371.11 -9.92 -43.39 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.98 Total: 8.10 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -4.66 Total: -0.38 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.45 Total: -55.13 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.40 Total: -18.02 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.46 -9.92 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958232386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.512 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds