Wall clock time and date at job start Sat Apr 11 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00104 * 2 1 4 4 H 1.48499 * 109.46972 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47209 * 300.00643 * 3 2 1 6 6 H 1.48509 * 109.46727 * 60.00614 * 3 2 1 7 7 C 1.38809 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99880 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00348 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.65158 * 180.02562 * 9 7 2 11 11 C 1.54913 * 104.92802 * 204.15214 * 10 9 7 12 12 H 1.08997 * 111.00361 * 81.04397 * 11 10 9 13 13 C 1.52997 * 111.00200 * 204.85802 * 11 10 9 14 14 N 1.46494 * 109.47237 * 293.54181 * 13 11 10 15 15 C 1.34779 * 120.00362 * 179.97438 * 14 13 11 16 16 O 1.21546 * 119.99398 * 0.02562 * 15 14 13 17 17 C 1.47898 * 120.00467 * 180.02562 * 15 14 13 18 18 C 1.38894 * 121.10892 * 354.16850 * 17 15 14 19 19 C 1.39280 * 119.58003 * 179.68504 * 18 17 15 20 20 N 1.30998 * 121.87629 * 0.66214 * 19 18 17 21 21 C 1.33531 * 121.83126 * 359.64370 * 20 19 18 22 22 C 1.40709 * 120.96974 * 180.02562 * 21 20 19 23 23 C 1.36062 * 119.74721 * 179.97438 * 22 21 20 24 24 C 1.39353 * 121.04810 * 0.04236 * 23 22 21 25 25 C 1.36248 * 120.84093 * 359.97438 * 24 23 22 26 26 C 1.40101 * 119.64542 * 359.97438 * 25 24 23 27 27 C 1.55160 * 101.58129 * 322.93210 * 11 10 9 28 28 H 1.09004 * 110.71980 * 276.96470 * 27 11 10 29 29 O 1.42897 * 110.72068 * 153.86754 * 27 11 10 30 30 C 1.47299 * 125.79231 * 359.97438 * 9 7 2 31 31 H 0.97006 * 119.99500 * 359.97438 * 1 2 3 32 32 H 1.08995 * 110.36785 * 85.25584 * 10 9 7 33 33 H 1.09001 * 110.36270 * 323.04041 * 10 9 7 34 34 H 1.09006 * 109.47158 * 53.54734 * 13 11 10 35 35 H 1.09006 * 109.47133 * 173.54527 * 13 11 10 36 36 H 0.96999 * 120.00359 * 0.02562 * 14 13 11 37 37 H 1.07993 * 120.21252 * 0.02562 * 18 17 15 38 38 H 1.07995 * 119.05811 * 180.28228 * 19 18 17 39 39 H 1.08003 * 120.12946 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.47788 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.57883 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.17813 * 180.02562 * 25 24 23 43 43 H 0.96704 * 114.00020 * 180.02562 * 29 27 11 44 44 H 1.08995 * 109.85454 * 59.50411 * 30 9 7 45 45 H 1.08997 * 110.00330 * 298.43591 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2127 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.9334 -3.7311 -0.0005 11 6 0.8536 -4.6578 -0.6130 12 1 0.8590 -4.5979 -1.7013 13 6 1.0414 -6.1024 -0.1453 14 7 2.2935 -6.6331 -0.6899 15 6 2.6691 -7.8965 -0.4082 16 8 1.9685 -8.5956 0.2974 17 6 3.9335 -8.4322 -0.9575 18 6 4.6912 -7.6983 -1.8610 19 6 5.8804 -8.2309 -2.3532 20 7 6.3058 -9.4180 -1.9985 21 6 5.6266 -10.1818 -1.1392 22 6 6.1008 -11.4542 -0.7703 23 6 5.3889 -12.2114 0.1078 24 6 4.1920 -11.7481 0.6507 25 6 3.7019 -10.5215 0.3164 26 6 4.4095 -9.7145 -0.5841 27 6 -0.4479 -4.0486 -0.0280 28 1 -0.6321 -4.4258 0.9780 29 8 -1.5618 -4.3221 -0.8803 30 6 -0.1399 -2.5367 0.0005 31 1 -0.4850 0.8401 0.0004 32 1 2.1668 -4.0419 1.0178 33 1 2.8337 -3.7400 -0.6150 34 1 1.0783 -6.1299 0.9438 35 1 0.2066 -6.7093 -0.4960 36 1 2.8528 -6.0751 -1.2527 37 1 4.3633 -6.7187 -2.1758 38 1 6.4652 -7.6511 -3.0518 39 1 7.0263 -11.8283 -1.1825 40 1 5.7570 -13.1872 0.3883 41 1 3.6459 -12.3691 1.3453 42 1 2.7734 -10.1729 0.7439 43 1 -2.4001 -3.9623 -0.5597 44 1 -0.5614 -2.0561 -0.8823 45 1 -0.5594 -2.0895 0.9017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958232386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:24 Heat of formation + Delta-G solvation = -18.215239 kcal Electronic energy + Delta-G solvation = -28641.047715 eV Core-core repulsion = 24623.345498 eV Total energy + Delta-G solvation = -4017.702216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.16387 -40.63747 -39.69454 -38.09201 -36.65989 -36.21180 -34.60702 -33.97412 -31.77277 -31.50480 -30.76352 -29.30768 -27.43593 -26.23760 -24.97586 -24.54887 -23.52884 -22.36433 -21.80603 -21.27250 -19.31664 -18.88411 -18.64903 -18.46085 -18.06577 -17.13911 -16.91213 -16.54763 -16.46419 -15.96507 -15.80048 -15.62868 -15.39577 -15.25474 -14.84088 -14.67118 -14.42655 -14.26103 -14.12717 -13.94428 -13.67847 -13.21704 -13.10268 -12.79090 -12.76529 -12.64019 -12.45725 -12.33096 -12.25738 -11.90771 -11.78931 -11.56979 -11.55512 -11.34549 -10.84707 -10.74876 -10.36217 -10.25331 -9.81357 -9.29425 -8.93849 -7.87031 -5.23091 -0.96754 -0.22912 0.66069 1.47223 1.47265 1.57623 1.71024 1.87419 2.07989 2.47682 3.08729 3.21367 3.27999 3.33162 3.41371 3.54150 3.61699 3.69129 3.73208 3.85808 3.88141 4.14285 4.17600 4.22257 4.38940 4.41611 4.43835 4.54514 4.55369 4.62540 4.72897 4.77091 4.86499 4.94243 5.04526 5.07184 5.25915 5.33284 5.34830 5.42208 5.48171 5.49058 5.56249 5.71161 5.88474 6.15845 6.33556 6.79853 6.88115 7.00221 7.06462 7.73441 8.36939 9.23559 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.002367 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.691215 B =11828.797138 C =12973.511722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.238 4.238 8 H 0.089 0.911 9 N -0.625 5.625 10 C 0.138 3.862 11 C -0.090 4.090 12 H 0.090 0.910 13 C 0.147 3.853 14 N -0.703 5.703 15 C 0.560 3.440 16 O -0.558 6.558 17 C -0.092 4.092 18 C -0.123 4.123 19 C 0.125 3.875 20 N -0.475 5.475 21 C 0.100 3.900 22 C -0.107 4.107 23 C -0.093 4.093 24 C -0.113 4.113 25 C -0.129 4.129 26 C -0.086 4.086 27 C 0.097 3.903 28 H 0.076 0.924 29 O -0.569 6.569 30 C 0.160 3.840 31 H 0.246 0.754 32 H 0.029 0.971 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.414 0.586 37 H 0.173 0.827 38 H 0.203 0.797 39 H 0.152 0.848 40 H 0.165 0.835 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.393 0.607 44 H 0.020 0.980 45 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.328 -21.992 -2.572 24.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.367 4.367 8 H 0.107 0.893 9 N -0.352 5.352 10 C 0.013 3.987 11 C -0.110 4.110 12 H 0.108 0.892 13 C 0.023 3.977 14 N -0.354 5.354 15 C 0.348 3.652 16 O -0.438 6.438 17 C -0.103 4.103 18 C -0.143 4.143 19 C -0.047 4.047 20 N -0.184 5.184 21 C -0.021 4.021 22 C -0.126 4.126 23 C -0.113 4.113 24 C -0.131 4.131 25 C -0.147 4.147 26 C -0.088 4.088 27 C 0.037 3.963 28 H 0.093 0.907 29 O -0.377 6.377 30 C 0.034 3.966 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.252 0.748 37 H 0.191 0.809 38 H 0.220 0.780 39 H 0.169 0.831 40 H 0.182 0.818 41 H 0.169 0.831 42 H 0.169 0.831 43 H 0.243 0.757 44 H 0.038 0.962 45 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 10.009 -22.970 -2.706 25.202 hybrid contribution -1.032 2.361 0.513 2.628 sum 8.977 -20.608 -2.192 22.585 Atomic orbital electron populations 1.70165 1.06333 1.25213 1.58426 1.25661 0.96625 1.01115 1.02699 0.85017 0.78374 0.79459 0.76529 1.18671 1.22097 1.22206 1.19519 0.91158 0.83383 1.42660 0.89342 1.44668 1.02036 1.01313 1.87186 1.21797 0.95222 0.83807 0.97872 1.22422 0.94351 0.92830 1.01370 0.89211 1.21193 0.85705 0.92107 0.98694 1.45802 1.24444 1.13103 1.52059 1.18240 0.85009 0.81800 0.80167 1.90586 1.55432 1.58324 1.39474 1.20347 0.95432 0.95185 0.99372 1.22843 0.95082 1.01511 0.94891 1.23567 0.93322 0.91043 0.96808 1.67859 1.32651 1.06519 1.11387 1.19212 0.91446 0.96153 0.95282 1.21099 1.01314 0.91593 0.98550 1.21362 0.93944 1.00978 0.94976 1.21443 0.96393 0.95668 0.99555 1.22034 1.01253 0.94879 0.96542 1.18880 0.96358 0.94423 0.99170 1.22885 0.86267 0.94164 0.93033 0.90662 1.86389 1.19484 1.79921 1.51862 1.21637 0.84723 0.91809 0.98427 0.94445 0.95296 0.92151 0.91143 0.90716 0.74823 0.80929 0.78048 0.83063 0.81784 0.83124 0.83113 0.75729 0.96200 0.96975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.92 10.34 21.65 0.22 -55.69 16 2 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 3 Si 0.98 44.48 29.55 68.60 2.03 46.50 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 7 C -0.24 -12.74 10.28 84.03 0.86 -11.87 16 8 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.62 -30.24 3.40 -691.29 -2.35 -32.60 16 10 C 0.14 4.95 6.40 86.86 0.56 5.51 16 11 C -0.09 -2.76 2.83 -9.40 -0.03 -2.79 16 12 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 13 C 0.15 3.80 5.12 86.38 0.44 4.24 16 14 N -0.70 -15.79 5.36 -465.92 -2.50 -18.29 16 15 C 0.56 14.43 7.75 86.80 0.67 15.11 16 16 O -0.56 -17.51 13.52 -3.86 -0.05 -17.57 16 17 C -0.09 -2.12 5.94 -19.68 -0.12 -2.24 16 18 C -0.12 -2.02 9.60 22.68 0.22 -1.81 16 19 C 0.12 2.00 11.14 85.07 0.95 2.95 16 20 N -0.48 -10.21 10.30 -188.73 -1.94 -12.15 16 21 C 0.10 2.30 6.61 40.34 0.27 2.57 16 22 C -0.11 -1.93 9.98 22.37 0.22 -1.71 16 23 C -0.09 -1.36 9.94 22.03 0.22 -1.14 16 24 C -0.11 -1.99 9.96 22.07 0.22 -1.77 16 25 C -0.13 -3.10 9.25 22.26 0.21 -2.89 16 26 C -0.09 -2.13 5.76 -21.09 -0.12 -2.25 16 27 C 0.10 3.36 3.80 31.78 0.12 3.48 16 28 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 29 O -0.57 -18.24 13.39 -148.98 -1.99 -20.24 16 30 C 0.16 7.51 5.16 86.68 0.45 7.95 16 31 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 32 H 0.03 1.04 8.00 -2.39 -0.02 1.02 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.90 8.10 -2.38 -0.02 1.88 16 35 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.41 7.32 6.51 -92.71 -0.60 6.72 16 37 H 0.17 1.71 6.55 -2.91 -0.02 1.69 16 38 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 41 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.15 4.13 4.98 -2.91 -0.01 4.12 16 43 H 0.39 9.71 9.12 -74.05 -0.68 9.04 16 44 H 0.02 1.07 7.30 -2.39 -0.02 1.05 16 45 H 0.01 0.64 7.52 -2.39 -0.02 0.62 16 Total: -1.00 -75.03 371.11 -1.22 -76.25 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -0.23 Total: 23.73 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 5.60 Total: 10.05 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -6.57 Total: -118.73 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -2.05 Total: -37.80 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -75.03 -1.22 -76.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958232386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.033 kcal (2) G-P(sol) polarization free energy of solvation -75.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds